1UG9
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![BU of 1ug9 by Molmil](/molmil-images/mine/1ug9) | Crystal Structure of Glucodextranase from Arthrobacter globiformis I42 | Descriptor: | CALCIUM ION, GLYCEROL, glucodextranase | Authors: | Mizuno, M, Tonozuka, T, Suzuki, S, Uotsu-Tomita, R, Ohtaki, A, Kamitori, S, Nishikawa, A, Sakano, Y. | Deposit date: | 2003-06-16 | Release date: | 2003-12-09 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Structural insights into substrate specificity and function of glucodextranase J.Biol.Chem., 279, 2004
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3APA
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![BU of 3apa by Molmil](/molmil-images/mine/3apa) | Crystal structure of human pancreatic secretory protein ZG16p | Descriptor: | CHLORIDE ION, GLYCEROL, Zymogen granule membrane protein 16 | Authors: | Kanagawa, M, Satoh, T, Nakano, Y, Kojima-Aikawa, K, Yamaguchi, Y. | Deposit date: | 2010-10-13 | Release date: | 2010-12-08 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | Crystal structures of human secretory proteins ZG16p and ZG16b reveal a Jacalin-related beta-prism fold Biochem.Biophys.Res.Commun., 2010
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3AQG
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![BU of 3aqg by Molmil](/molmil-images/mine/3aqg) | Crystal structure of human pancreatic secretory protein ZG16b | Descriptor: | PHOSPHATE ION, Zymogen granule protein 16 homolog B | Authors: | Kanagawa, M, Satoh, T, Nakano, Y, Kojima-Aikawa, K, Yamaguchi, Y. | Deposit date: | 2010-11-01 | Release date: | 2010-12-08 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.75 Å) | Cite: | Crystal structures of human secretory proteins ZG16p and ZG16b reveal a Jacalin-related beta-prism fold Biochem.Biophys.Res.Commun., 2010
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1UH3
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![BU of 1uh3 by Molmil](/molmil-images/mine/1uh3) | Thermoactinomyces vulgaris R-47 alpha-amylase/acarbose complex | Descriptor: | (1S,2S,3R,6R)-6-amino-4-(hydroxymethyl)cyclohex-4-ene-1,2,3-triol, 4,6-dideoxy-alpha-D-xylo-hexopyranose-(1-4)-alpha-D-glucopyranose, 6-AMINO-4-HYDROXYMETHYL-CYCLOHEX-4-ENE-1,2,3-TRIOL, ... | Authors: | Abe, A, Tonozuka, T, Sakano, Y, Kamitori, S. | Deposit date: | 2003-06-23 | Release date: | 2004-01-13 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Complex Structures of Thermoactinomyces vulgaris R-47 alpha-Amylase 1 with Malto-oligosaccharides Demonstrate the Role of Domain N Acting as a Starch-binding Domain J.Mol.Biol., 335, 2004
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1UH2
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![BU of 1uh2 by Molmil](/molmil-images/mine/1uh2) | Thermoactinomyces vulgaris R-47 alpha-amylase/malto-hexaose complex | Descriptor: | CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ... | Authors: | Abe, A, Tonozuka, T, Sakano, Y, Kamitori, S. | Deposit date: | 2003-06-23 | Release date: | 2004-01-13 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Complex Structures of Thermoactinomyces vulgaris R-47 alpha-Amylase 1 with Malto-oligosaccharides Demonstrate the Role of Domain N Acting as a Starch-binding Domain J.Mol.Biol., 335, 2004
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1UH4
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![BU of 1uh4 by Molmil](/molmil-images/mine/1uh4) | Thermoactinomyces vulgaris R-47 alpha-amylase 1/malto-tridecaose complex | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, alpha-D-glucopyranose, ... | Authors: | Abe, A, Tonozuka, T, Sakano, Y, Kamitori, S. | Deposit date: | 2003-06-24 | Release date: | 2004-01-13 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Complex Structures of Thermoactinomyces vulgaris R-47 alpha-Amylase 1 with Malto-oligosaccharides Demonstrate the Role of Domain N Acting as a Starch-binding Domain J.Mol.Biol., 335, 2004
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1VB9
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![BU of 1vb9 by Molmil](/molmil-images/mine/1vb9) | Crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase II (TVA II) complexed with transglycosylated product | Descriptor: | CALCIUM ION, alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-[alpha-D-glucopyranose-(1-6)]alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, alpha-amylase II | Authors: | Mizuno, M, Tonozuka, T, Uechi, A, Ohtaki, A, Ichikawa, K, Kamitori, S, Nishikawa, A, Sakano, Y. | Deposit date: | 2004-02-25 | Release date: | 2005-03-08 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | The crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase II (TVA II) complexed with transglycosylated product EUR.J.BIOCHEM., 271, 2004
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1ULV
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![BU of 1ulv by Molmil](/molmil-images/mine/1ulv) | Crystal Structure of Glucodextranase Complexed with Acarbose | Descriptor: | 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, CALCIUM ION, glucodextranase | Authors: | Mizuno, M, Tonozuka, T, Suzuki, S, Uotsu-Tomita, R, Kamitori, S, Nishikawa, A, Sakano, Y. | Deposit date: | 2003-09-16 | Release date: | 2003-12-09 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.42 Å) | Cite: | Structural insights into substrate specificity and function of glucodextranase J.Biol.Chem., 279, 2004
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1VFO
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![BU of 1vfo by Molmil](/molmil-images/mine/1vfo) | Crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase 2/beta-cyclodextrin complex | Descriptor: | CALCIUM ION, Cyclic alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, Cycloheptakis-(1-4)-(alpha-D-glucopyranose), ... | Authors: | Ohtaki, A, Mizuno, M, Tonozuka, T, Sakano, Y, Kamitori, S. | Deposit date: | 2004-04-16 | Release date: | 2005-02-08 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.81 Å) | Cite: | Complex structures of Thermoactinomyces vulgaris R-47 alpha-amylase 2 with acarbose and cyclodextrins demonstrate the multiple substrate recognition mechanism J.BIOL.CHEM., 279, 2004
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1IZJ
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![BU of 1izj by Molmil](/molmil-images/mine/1izj) | Thermoactinomyces vulgaris R-47 alpha-amylase 1 mutant enzyme f313a | Descriptor: | CALCIUM ION, amylase | Authors: | Ohtaki, A, Iguchi, A, Mizuno, M, Tonozuka, T, Sakano, Y, Kamitori, S. | Deposit date: | 2002-10-03 | Release date: | 2003-07-29 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Mutual conversion of substrate specificities of Thermoactinomyces vulgaris R-47 alpha-amylases TVAI and TVAII by site-directed mutagenesis CARBOHYDR.RES., 338, 2003
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1IZK
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![BU of 1izk by Molmil](/molmil-images/mine/1izk) | Thermoactinomyces vulgaris R-47 alpha-amylase 1 mutant enzyme w398v | Descriptor: | CALCIUM ION, amylase | Authors: | Ohtaki, A, Iguchi, A, Mizuno, M, Tonozuka, T, Sakano, Y, Kamitori, S. | Deposit date: | 2002-10-03 | Release date: | 2003-07-29 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Mutual conversion of substrate specificities of Thermoactinomyces vulgaris R-47 alpha-amylases TVAI and TVAII by site-directed mutagenesis CARBOHYDR.RES., 338, 2003
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1JI1
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![BU of 1ji1 by Molmil](/molmil-images/mine/1ji1) | Crystal Structure Analysis of Thermoactinomyces vulgaris R-47 alpha-Amylase 1 | Descriptor: | ALPHA-AMYLASE I, CALCIUM ION | Authors: | Kamitori, S, Abe, A, Ohtaki, A, Kaji, A, Tonozuka, T, Sakano, Y. | Deposit date: | 2001-06-28 | Release date: | 2002-06-05 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Crystal structures and structural comparison of Thermoactinomyces vulgaris R-47 alpha-amylase 1 (TVAI) at 1.6 A resolution and alpha-amylase 2 (TVAII) at 2.3 A resolution. J.Mol.Biol., 318, 2002
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3WID
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![BU of 3wid by Molmil](/molmil-images/mine/3wid) | Structure of a glucose dehydrogenase T277F mutant in complex with NADP | Descriptor: | Glucose 1-dehydrogenase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PENTAETHYLENE GLYCOL, ... | Authors: | Sakuraba, H, Kanoh, Y, Yoneda, K, Ohshima, T. | Deposit date: | 2013-09-10 | Release date: | 2014-05-14 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.25 Å) | Cite: | Structural insight into glucose dehydrogenase from the thermoacidophilic archaeon Thermoplasma volcanium. Acta Crystallogr.,Sect.D, 70, 2014
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3WIC
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![BU of 3wic by Molmil](/molmil-images/mine/3wic) | Structure of a substrate/cofactor-unbound glucose dehydrogenase | Descriptor: | Glucose 1-dehydrogenase, PENTAETHYLENE GLYCOL, S-1,2-PROPANEDIOL, ... | Authors: | Sakuraba, H, Kanoh, Y, Yoneda, K, Ohshima, T. | Deposit date: | 2013-09-10 | Release date: | 2014-05-14 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Structural insight into glucose dehydrogenase from the thermoacidophilic archaeon Thermoplasma volcanium. Acta Crystallogr.,Sect.D, 70, 2014
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2ZYK
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![BU of 2zyk by Molmil](/molmil-images/mine/2zyk) | Crystal structure of cyclo/maltodextrin-binding protein complexed with gamma-cyclodextrin | Descriptor: | Cyclooctakis-(1-4)-(alpha-D-glucopyranose), Solute-binding protein | Authors: | Tonozuka, T, Sogawa, A, Yamada, M, Matsumoto, N, Yoshida, H, Kamitori, S, Ichikawa, K, Mizuno, M, Nishikawa, A, Sakano, Y. | Deposit date: | 2009-01-26 | Release date: | 2009-02-10 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Structural basis for cyclodextrin recognition by Thermoactinomyces vulgaris cyclo/maltodextrin-binding protein Febs J., 274, 2007
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3WIE
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![BU of 3wie by Molmil](/molmil-images/mine/3wie) | Structure of a glucose dehydrogenase T277F mutant in complex with D-glucose and NAADP | Descriptor: | Glucose 1-dehydrogenase, ZINC ION, [[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4R,5R)-5-(3-carboxypyridin-1-ium-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphate, ... | Authors: | Sakuraba, H, Kanoh, Y, Yoneda, K, Ohshima, T. | Deposit date: | 2013-09-10 | Release date: | 2014-05-14 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.33 Å) | Cite: | Structural insight into glucose dehydrogenase from the thermoacidophilic archaeon Thermoplasma volcanium. Acta Crystallogr.,Sect.D, 70, 2014
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2D0F
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![BU of 2d0f by Molmil](/molmil-images/mine/2d0f) | Crystal Structure of Thermoactinomyces vulgaris R-47 Alpha-Amylase 1 (TVAI) Mutant D356N complexed with P2, a pullulan model oligosaccharide | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose, ... | Authors: | Abe, A, Yoshida, H, Tonozuka, T, Sakano, Y, Kamitori, S. | Deposit date: | 2005-08-02 | Release date: | 2006-07-11 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2.08 Å) | Cite: | Complexes of Thermoactinomyces vulgaris R-47 alpha-amylase 1 and pullulan model oligossacharides provide new insight into the mechanism for recognizing substrates with alpha-(1,6) glycosidic linkages Febs J., 272, 2005
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2D0H
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![BU of 2d0h by Molmil](/molmil-images/mine/2d0h) | Crystal Structure of Thermoactinomyces vulgaris R-47 Alpha-Amylase 1 (TVAI) Mutant D356N/E396Q complexed with P2, a pullulan model oligosaccharide | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ... | Authors: | Abe, A, Yoshida, H, Tonozuka, T, Sakano, Y, Kamitori, S. | Deposit date: | 2005-08-02 | Release date: | 2006-07-11 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Complexes of Thermoactinomyces vulgaris R-47 alpha-amylase 1 and pullulan model oligossacharides provide new insight into the mechanism for recognizing substrates with alpha-(1,6) glycosidic linkages Febs J., 272, 2005
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2D0G
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![BU of 2d0g by Molmil](/molmil-images/mine/2d0g) | Crystal Structure of Thermoactinomyces vulgaris R-47 Alpha-Amylase 1 (TVAI) Mutant D356N/E396Q complexed with P5, a pullulan model oligosaccharide | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, alpha-D-glucopyranose, ... | Authors: | Abe, A, Yoshida, H, Tonozuka, T, Sakano, Y, Kamitori, S. | Deposit date: | 2005-08-02 | Release date: | 2006-07-11 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Complexes of Thermoactinomyces vulgaris R-47 alpha-amylase 1 and pullulan model oligossacharides provide new insight into the mechanism for recognizing substrates with alpha-(1,6) glycosidic linkages Febs J., 272, 2005
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2D2O
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![BU of 2d2o by Molmil](/molmil-images/mine/2d2o) | Structure of a complex of Thermoactinomyces vulgaris R-47 alpha-amylase 2 with maltohexaose demonstrates the important role of aromatic residues at the reducing end of the substrate binding cleft | Descriptor: | CALCIUM ION, Neopullulanase 2, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose | Authors: | Ohtaki, A, Mizuno, M, Yoshida, H, Tonozuka, T, Sakano, Y, Kamitori, S. | Deposit date: | 2005-09-13 | Release date: | 2006-08-29 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Structure of a complex of Thermoactinomyces vulgaris R-47 alpha-amylase 2 with maltohexaose demonstrates the important role of aromatic residues at the reducing end of the substrate binding cleft Carbohydr.Res., 341, 2006
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3A6O
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![BU of 3a6o by Molmil](/molmil-images/mine/3a6o) | Crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase 2/acarbose complex | Descriptor: | ACARBOSE DERIVED PENTASACCHARIDE, CALCIUM ION, Neopullulanase 2 | Authors: | Ohtaki, A, Mizuno, M, Tonozuka, T, Sakano, Y, Kamitori, S. | Deposit date: | 2009-09-07 | Release date: | 2009-09-22 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Complex structures of Thermoactinomyces vulgaris R-47 alpha-amylase 2 with acarbose and cyclodextrins demonstrate the multiple substrate recognition mechanism J.BIOL.CHEM., 279, 2004
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1G1Y
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![BU of 1g1y by Molmil](/molmil-images/mine/1g1y) | CRYSTAL STRUCTURE OF ALPHA-AMYLASE II (TVAII) FROM THERMOACTINOMYCES VULGARIS R-47 AND BETA-CYCLODEXTRIN COMPLEX | Descriptor: | ALPHA-AMYLASE II, Cycloheptakis-(1-4)-(alpha-D-glucopyranose) | Authors: | Kondo, S, Ohtaki, A, Tonozuka, T, Sakano, Y, Kamitori, S. | Deposit date: | 2000-10-16 | Release date: | 2001-03-14 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | Studies on the hydrolyzing mechanism for cyclodextrins of Thermoactinomyces vulgaris R-47 alpha-amylase 2 (TVAII). X-ray structure of the mutant E354A complexed with beta-cyclodextrin, and kinetic analyses on cyclodextrins. J.Biochem.(Tokyo), 129, 2001
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