Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 181 件
8YXK
DownloadVisualize
BU of 8yxk by Molmil
X-ray structure of Clostridioides difficile endolysin Ecd09610 glucosaminidase domain.
分子名称: Phage cell wall hydrolase
著者Kamitori, S, Tamai, E.
登録日2024-04-02
公開日2024-05-15
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献X-ray structure and mutagenesis analyses of Clostridioides difficile endolysin Ecd09610 glucosaminidase domain.
Biochem.Biophys.Res.Commun., 715, 2024
8YXN
DownloadVisualize
BU of 8yxn by Molmil
X-ray structure of Clostridium perfringens autolysin catalytic domain in the P1 form
分子名称: Cell surface protein
著者Kamitori, S, Tamai, E.
登録日2024-04-02
公開日2024-05-15
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献X-ray structure and mutagenesis analyses of Clostridioides difficile endolysin Ecd09610 glucosaminidase domain.
Biochem.Biophys.Res.Commun., 715, 2024
1ZZE
DownloadVisualize
BU of 1zze by Molmil
X-ray Structure of NADPH-dependent Carbonyl Reductase from Sporobolomyces salmonicolor
分子名称: Aldehyde reductase II, SULFATE ION
著者Kamitori, S, Iguchi, A, Ohtaki, A, Yamada, M, Kita, K.
登録日2005-06-14
公開日2005-09-06
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献X-ray Structures of NADPH-dependent Carbonyl Reductase from Sporobolomyces salmonicolor Provide Insights into Stereoselective Reductions of Carbonyl Compounds
J.Mol.Biol., 352, 2005
7WRR
DownloadVisualize
BU of 7wrr by Molmil
X-ray structure of Thermus thermophilus HB8 transketorase in complex with TPP and MES
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, THIAMINE DIPHOSPHATE, ...
著者Kamitori, S, Yoshihara, A.
登録日2022-01-27
公開日2022-12-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Structural and biochemical characterizations of Thermus thermophilus HB8 transketolase producing a heptulose.
Appl.Microbiol.Biotechnol., 107, 2023
7WRT
DownloadVisualize
BU of 7wrt by Molmil
X-ray structure ofThermus thermophilus HB8 transketorase demonstrate in complex with TPP and D-erythrose-4-phosphate
分子名称: CALCIUM ION, ERYTHOSE-4-PHOSPHATE, THIAMINE DIPHOSPHATE, ...
著者Kamitori, S, Yoshihara, A.
登録日2022-01-27
公開日2022-12-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Structural and biochemical characterizations of Thermus thermophilus HB8 transketolase producing a heptulose.
Appl.Microbiol.Biotechnol., 107, 2023
8GSY
DownloadVisualize
BU of 8gsy by Molmil
X-ray structure of Clostridium perfringens pili protein B N-terminal domain
分子名称: Peptidoglycan bound protein
著者Kamitori, S, Yamada, M, Tamai, E.
登録日2022-09-07
公開日2023-06-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Structural and biochemical characterization of Clostridium perfringens pili protein B collagen-binding domains.
Febs Lett., 597, 2023
8GSX
DownloadVisualize
BU of 8gsx by Molmil
X-ray structure of Clostridium perfringens pili protein B collagen-binding domains
分子名称: ACETATE ION, pili protein
著者Kamitori, S, Yamada, M, Tamai, E.
登録日2022-09-07
公開日2023-06-07
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.86 Å)
主引用文献Structural and biochemical characterization of Clostridium perfringens pili protein B collagen-binding domains.
Febs Lett., 597, 2023
8WL7
DownloadVisualize
BU of 8wl7 by Molmil
X-ray structure of Enterobacter cloacae allose-binding protein in complex with D-allose
分子名称: Allose ABC transporter, beta-D-allopyranose
著者Kamitori, S.
登録日2023-09-29
公開日2023-10-25
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献X-ray structures of Enterobacter cloacae allose-binding protein in complexes with monosaccharides demonstrate its unique recognition mechanism for high affinity to allose.
Biochem.Biophys.Res.Commun., 682, 2023
8WL9
DownloadVisualize
BU of 8wl9 by Molmil
X-ray structure of Enterobacter cloacae allose-binding protein in complex with D-ribose
分子名称: Allose ABC transporter, beta-D-ribopyranose
著者Kamitori, S.
登録日2023-09-29
公開日2023-10-25
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献X-ray structures of Enterobacter cloacae allose-binding protein in complexes with monosaccharides demonstrate its unique recognition mechanism for high affinity to allose.
Biochem.Biophys.Res.Commun., 682, 2023
8WL5
DownloadVisualize
BU of 8wl5 by Molmil
X-ray structure of Enterobacter cloacae allose-binding protein in free form
分子名称: 1,2-ETHANEDIOL, Allose ABC transporter
著者Kamitori, S.
登録日2023-09-29
公開日2023-10-25
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献X-ray structures of Enterobacter cloacae allose-binding protein in complexes with monosaccharides demonstrate its unique recognition mechanism for high affinity to allose.
Biochem.Biophys.Res.Commun., 682, 2023
8WLB
DownloadVisualize
BU of 8wlb by Molmil
X-ray structure of Enterobacter cloacae allose-binding protein in complex with D-psicose
分子名称: Allose ABC transporter, alpha-D-psicopyranose
著者Kamitori, S.
登録日2023-09-29
公開日2023-10-25
実験手法X-RAY DIFFRACTION (1.71 Å)
主引用文献X-ray structures of Enterobacter cloacae allose-binding protein in complexes with monosaccharides demonstrate its unique recognition mechanism for high affinity to allose.
Biochem.Biophys.Res.Commun., 682, 2023
6L67
DownloadVisualize
BU of 6l67 by Molmil
X-ray structure of human galectin-10 in complex with D-galactose
分子名称: Galectin-10, beta-D-galactopyranose
著者Kamitori, S.
登録日2019-10-28
公開日2020-03-04
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Structures of human galectin-10/monosaccharide complexes demonstrate potential of monosaccharides as effectors in forming Charcot-Leyden crystals.
Biochem.Biophys.Res.Commun., 2020
6L6B
DownloadVisualize
BU of 6l6b by Molmil
X-ray structure of human galectin-10 in complex with L-fucose
分子名称: Galectin-10, beta-L-fucopyranose
著者Kamitori, S.
登録日2019-10-28
公開日2020-03-04
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.802 Å)
主引用文献Structures of human galectin-10/monosaccharide complexes demonstrate potential of monosaccharides as effectors in forming Charcot-Leyden crystals.
Biochem.Biophys.Res.Commun., 2020
6L6C
DownloadVisualize
BU of 6l6c by Molmil
X-ray structure of human galectin-10 in complex with D-arabinose
分子名称: Galectin-10, alpha-D-arabinopyranose
著者Kamitori, S.
登録日2019-10-28
公開日2020-03-04
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Structures of human galectin-10/monosaccharide complexes demonstrate potential of monosaccharides as effectors in forming Charcot-Leyden crystals.
Biochem.Biophys.Res.Commun., 2020
6L64
DownloadVisualize
BU of 6l64 by Molmil
X-ray structure of human galectin-10 in complex with D-glucose
分子名称: Galectin-10, beta-D-glucopyranose
著者Kamitori, S.
登録日2019-10-28
公開日2020-03-04
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Structures of human galectin-10/monosaccharide complexes demonstrate potential of monosaccharides as effectors in forming Charcot-Leyden crystals.
Biochem.Biophys.Res.Commun., 2020
6L6A
DownloadVisualize
BU of 6l6a by Molmil
X-ray structure of human galectin-10 in complex with D-mannose
分子名称: Galectin-10, beta-D-mannopyranose
著者Kamitori, S.
登録日2019-10-28
公開日2020-03-04
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Structures of human galectin-10/monosaccharide complexes demonstrate potential of monosaccharides as effectors in forming Charcot-Leyden crystals.
Biochem.Biophys.Res.Commun., 2020
1BVZ
DownloadVisualize
BU of 1bvz by Molmil
ALPHA-AMYLASE II (TVAII) FROM THERMOACTINOMYCES VULGARIS R-47
分子名称: PROTEIN (ALPHA-AMYLASE II)
著者Kamitori, S, Kondo, S, Okuyama, K, Yokota, T, Shimura, Y, Tonozuka, T, Sakano, Y.
登録日1998-09-22
公開日1999-03-02
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase II (TVAII) hydrolyzing cyclodextrins and pullulan at 2.6 A resolution.
J.Mol.Biol., 287, 1999
1JI2
DownloadVisualize
BU of 1ji2 by Molmil
Improved X-ray Structure of Thermoactinomyces vulgaris R-47 alpha-Amylase 2
分子名称: ALPHA-AMYLASE II, CALCIUM ION
著者Kamitori, S, Abe, A, Ohtaki, A, Kaji, A, Tonozuka, T, Sakano, Y.
登録日2001-06-28
公開日2002-06-05
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structures and structural comparison of Thermoactinomyces vulgaris R-47 alpha-amylase 1 (TVAI) at 1.6 A resolution and alpha-amylase 2 (TVAII) at 2.3 A resolution.
J.Mol.Biol., 318, 2002
4KRU
DownloadVisualize
BU of 4kru by Molmil
X-ray structure of catalytic domain of endolysin from clostridium perfringens phage phiSM101
分子名称: 2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, Autolytic lysozyme, ...
著者Kamitori, S, Yoshida, H.
登録日2013-05-17
公開日2014-04-02
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.37 Å)
主引用文献X-ray structure of a novel endolysin encoded by episomal phage phiSM101 of Clostridium perfringens.
Mol.Microbiol., 92, 2014
4KRT
DownloadVisualize
BU of 4krt by Molmil
X-ray structure of endolysin from clostridium perfringens phage phiSM101
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETATE ION, Autolytic lysozyme, ...
著者Kamitori, S, Yoshida, H.
登録日2013-05-17
公開日2014-04-02
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.92 Å)
主引用文献X-ray structure of a novel endolysin encoded by episomal phage phiSM101 of Clostridium perfringens.
Mol.Microbiol., 92, 2014
2GS9
DownloadVisualize
BU of 2gs9 by Molmil
Crystal structure of TT1324 from Thermus thermophilis HB8
分子名称: FORMIC ACID, Hypothetical protein TT1324, S-ADENOSYL-L-HOMOCYSTEINE
著者Kamitori, S, Abe, A, Ebihara, A, Kanagawa, M, Nakagawa, N, Kuroishi, C, Agari, Y, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-04-25
公開日2007-03-13
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of TT1324 from Thermus thermophilis HB8
To be Published
6IXZ
DownloadVisualize
BU of 6ixz by Molmil
X-ray structure of sortase C from Clostridium perfringens SM101
分子名称: Sortase family protein
著者Kamitori, S, Tamai, E.
登録日2018-12-12
公開日2019-08-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Structures of major pilins in Clostridium perfringens demonstrate dynamic conformational change.
Acta Crystallogr D Struct Biol, 75, 2019
6IXY
DownloadVisualize
BU of 6ixy by Molmil
X-ray structure of major pilin from C. perfringens SM101
分子名称: pilin
著者Kamitori, S, Tamai, E.
登録日2018-12-12
公開日2019-08-14
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.72 Å)
主引用文献Structures of major pilins in Clostridium perfringens demonstrate dynamic conformational change.
Acta Crystallogr D Struct Biol, 75, 2019
1JI1
DownloadVisualize
BU of 1ji1 by Molmil
Crystal Structure Analysis of Thermoactinomyces vulgaris R-47 alpha-Amylase 1
分子名称: ALPHA-AMYLASE I, CALCIUM ION
著者Kamitori, S, Abe, A, Ohtaki, A, Kaji, A, Tonozuka, T, Sakano, Y.
登録日2001-06-28
公開日2002-06-05
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structures and structural comparison of Thermoactinomyces vulgaris R-47 alpha-amylase 1 (TVAI) at 1.6 A resolution and alpha-amylase 2 (TVAII) at 2.3 A resolution.
J.Mol.Biol., 318, 2002
173D
DownloadVisualize
BU of 173d by Molmil
MULTIPLE BINDING MODES OF ANTICANCER DRUG ACTINOMYCIN D: X-RAY, MOLECULAR MODELING, AND SPECTROSCOPIC STUDIES OF D(GAAGCTTC)2-ACTINOMYCIN D COMPLEXES AND ITS HOST DNA
分子名称: ACTINOMYCIN D, DNA (5'-D(*GP*AP*AP*GP*CP*TP*TP*C)-3')
著者Kamitori, S, Takusagawa, F.
登録日1994-04-18
公開日1994-10-15
最終更新日2024-07-10
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Multiple Binding Modes of Anticancer Drug Actinomycin D: X-Ray, Molecular Modeling, and Spectroscopic Studies of D(Gaagcttc)2-Actinomycin D Complexes and its Host DNA
J.Am.Chem.Soc., 116, 1994

226707

件を2024-10-30に公開中

PDB statisticsPDBj update infoContact PDBjnumon