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PDB: 181 件
3ALM
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Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, mutant C294A
分子名称: 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL
著者Kobayashi, J, Yoshida, H, Yoshikane, Y, Kamitori, S, Yagi, T.
登録日2010-08-04
公開日2011-08-10
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase
To be Published
3W7T
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BU of 3w7t by Molmil
Escherichia coli K12 YgjK complexed with mannose
分子名称: CALCIUM ION, MAGNESIUM ION, Uncharacterized protein YgjK, ...
著者Miyazaki, T, Kurakata, Y, Uechi, A, Yoshida, H, Kamitori, S, Sakano, Y, Nishikawa, A, Tonozuka, T.
登録日2013-03-06
公開日2013-04-03
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural insights into the substrate specificity and function of Escherichia coli K12 YgjK, a glucosidase belonging to the glycoside hydrolase family 63.
J.Mol.Biol., 381, 2008
1XRB
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S-adenosylmethionine synthetase (MAT, ATP: L-methionine S-adenosyltransferase, E.C.2.5.1.6) in which MET residues are replaced with selenomethionine residues (MSE)
分子名称: MAGNESIUM ION, PHOSPHATE ION, POTASSIUM ION, ...
著者Takusagawa, F, Kamitori, S, Misaki, S, Markham, G.D.
登録日1995-10-26
公開日1996-03-08
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal structure of S-adenosylmethionine synthetase.
J.Biol.Chem., 271, 1996
3W7S
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BU of 3w7s by Molmil
Escherichia coli K12 YgjK complexed with glucose
分子名称: CALCIUM ION, Uncharacterized protein YgjK, alpha-D-glucopyranose
著者Miyazaki, T, Kurakata, Y, Uechi, A, Yoshida, H, Kamitori, S, Sakano, Y, Nishikawa, A, Tonozuka, T.
登録日2013-03-06
公開日2013-04-03
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural insights into the substrate specificity and function of Escherichia coli K12 YgjK, a glucosidase belonging to the glycoside hydrolase family 63.
J.Mol.Biol., 381, 2008
3WUC
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BU of 3wuc by Molmil
X-ray crystal structure of Xenopus laevis galectin-Va
分子名称: Galectin, MALONIC ACID, beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose
著者Nonaka, Y, Yoshida, H, Kamitori, S, Nakamura, T.
登録日2014-04-23
公開日2015-04-08
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure of a Xenopus laevis skin proto-type galectin, close to but distinct from galectin-1.
Glycobiology, 25, 2015
3WW3
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X-ray structures of Cellulomonas parahominis L-ribose isomerase with no ligand
分子名称: L-ribose isomerase, MANGANESE (II) ION
著者Terami, Y, Yoshida, H, Takata, G, Kamitori, S.
登録日2014-06-13
公開日2015-04-29
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Essentiality of tetramer formation of Cellulomonas parahominis L-ribose isomerase involved in novel L-ribose metabolic pathway.
Appl.Microbiol.Biotechnol., 99, 2015
3WW1
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BU of 3ww1 by Molmil
X-ray structure of Cellulomonas parahominis L-ribose isomerase with L-ribose
分子名称: L-ribose, L-ribose isomerase, MANGANESE (II) ION, ...
著者Terami, Y, Yoshida, H, Takata, G, Kamitori, S.
登録日2014-06-13
公開日2015-04-29
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Essentiality of tetramer formation of Cellulomonas parahominis L-ribose isomerase involved in novel L-ribose metabolic pathway.
Appl.Microbiol.Biotechnol., 99, 2015
3W7U
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BU of 3w7u by Molmil
Escherichia coli K12 YgjK complexed with galactose
分子名称: CALCIUM ION, Uncharacterized protein YgjK, alpha-D-galactopyranose
著者Miyazaki, T, Kurakata, Y, Uechi, A, Yoshida, H, Kamitori, S, Sakano, Y, Nishikawa, A, Tonozuka, T.
登録日2013-03-06
公開日2013-04-03
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Structural insights into the substrate specificity and function of Escherichia coli K12 YgjK, a glucosidase belonging to the glycoside hydrolase family 63.
J.Mol.Biol., 381, 2008
3WW4
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BU of 3ww4 by Molmil
X-ray structures of Cellulomonas parahominis L-ribose isomerase with L-allose
分子名称: L-allose, L-ribose isomerase, MANGANESE (II) ION, ...
著者Terami, Y, Yoshida, H, Takata, G, Kamitori, S.
登録日2014-06-13
公開日2015-04-29
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Essentiality of tetramer formation of Cellulomonas parahominis L-ribose isomerase involved in novel L-ribose metabolic pathway.
Appl.Microbiol.Biotechnol., 99, 2015
1XRC
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BU of 1xrc by Molmil
CRYSTAL STRUCTURE OF S-ADENOSYLMETHIONINE SYNTHETASE
分子名称: COBALT (II) ION, PHOSPHATE ION, POTASSIUM ION, ...
著者Takusagawa, F, Kamitori, S, Misaki, S, Markham, G.D.
登録日1995-10-26
公開日1996-03-08
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal structure of S-adenosylmethionine synthetase.
J.Biol.Chem., 271, 1996
1XRA
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BU of 1xra by Molmil
CRYSTAL STRUCTURE OF S-ADENOSYLMETHIONINE SYNTHETASE
分子名称: MAGNESIUM ION, PHOSPHATE ION, POTASSIUM ION, ...
著者Takusagawa, F, Kamitori, S, Misaki, S, Markham, G.D.
登録日1995-10-26
公開日1996-03-08
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal structure of S-adenosylmethionine synthetase.
J.Biol.Chem., 271, 1996
3WW2
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BU of 3ww2 by Molmil
X-ray structures of Cellulomonas parahominis L-ribose isomerase with L-psicose
分子名称: L-psicose, L-ribose isomerase, MANGANESE (II) ION, ...
著者Terami, Y, Yoshida, H, Takata, G, Kamitori, S.
登録日2014-06-13
公開日2015-04-29
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Essentiality of tetramer formation of Cellulomonas parahominis L-ribose isomerase involved in novel L-ribose metabolic pathway.
Appl.Microbiol.Biotechnol., 99, 2015
2D0F
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BU of 2d0f by Molmil
Crystal Structure of Thermoactinomyces vulgaris R-47 Alpha-Amylase 1 (TVAI) Mutant D356N complexed with P2, a pullulan model oligosaccharide
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose, ...
著者Abe, A, Yoshida, H, Tonozuka, T, Sakano, Y, Kamitori, S.
登録日2005-08-02
公開日2006-07-11
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Complexes of Thermoactinomyces vulgaris R-47 alpha-amylase 1 and pullulan model oligossacharides provide new insight into the mechanism for recognizing substrates with alpha-(1,6) glycosidic linkages
Febs J., 272, 2005
2D0H
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BU of 2d0h by Molmil
Crystal Structure of Thermoactinomyces vulgaris R-47 Alpha-Amylase 1 (TVAI) Mutant D356N/E396Q complexed with P2, a pullulan model oligosaccharide
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
著者Abe, A, Yoshida, H, Tonozuka, T, Sakano, Y, Kamitori, S.
登録日2005-08-02
公開日2006-07-11
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Complexes of Thermoactinomyces vulgaris R-47 alpha-amylase 1 and pullulan model oligossacharides provide new insight into the mechanism for recognizing substrates with alpha-(1,6) glycosidic linkages
Febs J., 272, 2005
2D0G
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BU of 2d0g by Molmil
Crystal Structure of Thermoactinomyces vulgaris R-47 Alpha-Amylase 1 (TVAI) Mutant D356N/E396Q complexed with P5, a pullulan model oligosaccharide
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, alpha-D-glucopyranose, ...
著者Abe, A, Yoshida, H, Tonozuka, T, Sakano, Y, Kamitori, S.
登録日2005-08-02
公開日2006-07-11
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Complexes of Thermoactinomyces vulgaris R-47 alpha-amylase 1 and pullulan model oligossacharides provide new insight into the mechanism for recognizing substrates with alpha-(1,6) glycosidic linkages
Febs J., 272, 2005
1WY9
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BU of 1wy9 by Molmil
Crystal structure of microglia-specific protein, Iba1
分子名称: Allograft inflammatory factor 1, CALCIUM ION
著者Yamada, M, Imai, Y, Kohsaka, S, Kamitori, S.
登録日2005-02-09
公開日2006-02-21
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献X-ray Structures of the Microglia/Macrophage-specific Protein Iba1 from Human and Mouse Demonstrate Novel Molecular Conformation Change Induced by Calcium binding
J.Mol.Biol., 364, 2006
1UG9
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Crystal Structure of Glucodextranase from Arthrobacter globiformis I42
分子名称: CALCIUM ION, GLYCEROL, glucodextranase
著者Mizuno, M, Tonozuka, T, Suzuki, S, Uotsu-Tomita, R, Ohtaki, A, Kamitori, S, Nishikawa, A, Sakano, Y.
登録日2003-06-16
公開日2003-12-09
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural insights into substrate specificity and function of glucodextranase
J.Biol.Chem., 279, 2004
1ULV
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Crystal Structure of Glucodextranase Complexed with Acarbose
分子名称: 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, CALCIUM ION, glucodextranase
著者Mizuno, M, Tonozuka, T, Suzuki, S, Uotsu-Tomita, R, Kamitori, S, Nishikawa, A, Sakano, Y.
登録日2003-09-16
公開日2003-12-09
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.42 Å)
主引用文献Structural insights into substrate specificity and function of glucodextranase
J.Biol.Chem., 279, 2004
1WMR
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Crystal Structure of Isopullulanase from Aspergillus niger ATCC 9642
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Isopullulanase
著者Mizuno, M, Tonozuka, T, Miyasaka, Y, Akeboshi, H, Kamitori, S, Nishikawa, A, Sakano, Y.
登録日2004-07-15
公開日2005-07-19
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal Structure of Aspergillus niger Isopullulanase, a Member of Glycoside Hydrolase Family 49
J.Mol.Biol., 376, 2008
1X0C
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Improved Crystal Structure of Isopullulanase from Aspergillus niger ATCC 9642
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Isopullulanase
著者Mizuno, M, Tonozuka, T, Yamamura, A, Miyasaka, Y, Akeboshi, H, Kamitori, S, Nishikawa, A, Sakano, Y.
登録日2005-03-17
公開日2006-06-13
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal Structure of Aspergillus niger Isopullulanase, a Member of Glycoside Hydrolase Family 49
J.Mol.Biol., 376, 2008
1UE8
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Crystal Structure of Thermophilic Cytochrome P450 from Sulfolobus tokodaii
分子名称: 367aa long hypothetical cytochrome P450, CHLORIDE ION, PROTOPORPHYRIN IX CONTAINING FE
著者Nakamura, N, Kamitori, S, Ohno, H.
登録日2003-05-09
公開日2004-07-13
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structure and direct electrochemistry of cytochrome P450 from the thermoacidophilic crenarchaeon, Sulfolobus tokodaii strain 7
J.Inorg.Biochem., 98, 2004
1UH3
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Thermoactinomyces vulgaris R-47 alpha-amylase/acarbose complex
分子名称: (1S,2S,3R,6R)-6-amino-4-(hydroxymethyl)cyclohex-4-ene-1,2,3-triol, 4,6-dideoxy-alpha-D-xylo-hexopyranose-(1-4)-alpha-D-glucopyranose, 6-AMINO-4-HYDROXYMETHYL-CYCLOHEX-4-ENE-1,2,3-TRIOL, ...
著者Abe, A, Tonozuka, T, Sakano, Y, Kamitori, S.
登録日2003-06-23
公開日2004-01-13
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Complex Structures of Thermoactinomyces vulgaris R-47 alpha-Amylase 1 with Malto-oligosaccharides Demonstrate the Role of Domain N Acting as a Starch-binding Domain
J.Mol.Biol., 335, 2004
1UH2
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Thermoactinomyces vulgaris R-47 alpha-amylase/malto-hexaose complex
分子名称: CALCIUM ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
著者Abe, A, Tonozuka, T, Sakano, Y, Kamitori, S.
登録日2003-06-23
公開日2004-01-13
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Complex Structures of Thermoactinomyces vulgaris R-47 alpha-Amylase 1 with Malto-oligosaccharides Demonstrate the Role of Domain N Acting as a Starch-binding Domain
J.Mol.Biol., 335, 2004
1UH4
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Thermoactinomyces vulgaris R-47 alpha-amylase 1/malto-tridecaose complex
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, alpha-D-glucopyranose, ...
著者Abe, A, Tonozuka, T, Sakano, Y, Kamitori, S.
登録日2003-06-24
公開日2004-01-13
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Complex Structures of Thermoactinomyces vulgaris R-47 alpha-Amylase 1 with Malto-oligosaccharides Demonstrate the Role of Domain N Acting as a Starch-binding Domain
J.Mol.Biol., 335, 2004
1VB9
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Crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase II (TVA II) complexed with transglycosylated product
分子名称: CALCIUM ION, alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-[alpha-D-glucopyranose-(1-6)]alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, alpha-amylase II
著者Mizuno, M, Tonozuka, T, Uechi, A, Ohtaki, A, Ichikawa, K, Kamitori, S, Nishikawa, A, Sakano, Y.
登録日2004-02-25
公開日2005-03-08
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献The crystal structure of Thermoactinomyces vulgaris R-47 alpha-amylase II (TVA II) complexed with transglycosylated product
EUR.J.BIOCHEM., 271, 2004

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