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PDB: 51 results

8B6X
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NMR assignment and structure of a peptide derived from the membrane proximal external region of HIV-1 gp41 in DPC micelles
Descriptor: Envelope glycoprotein gp160
Authors:Jimenez, M.A, Partida-Hanon, A, Nieva, J.L.
Deposit date:2022-09-27
Release date:2022-11-30
Method:SOLUTION NMR
Cite:Molecular recognition of a membrane-anchored HIV-1 pan-neutralizing epitope.
Commun Biol, 5, 2022
8B6Y
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NMR assignment and structure of a peptide derived from the membrane proximal external region of HIV-1 gp41 in the presence of hexafluoroisopropanol
Descriptor: Envelope glycoprotein gp160
Authors:Jimenez, M.A, Partida-Hanon, A, Nieva, J.L.
Deposit date:2022-09-27
Release date:2022-12-07
Method:SOLUTION NMR
Cite:Molecular recognition of a membrane-anchored HIV-1 pan-neutralizing epitope.
Commun Biol, 5, 2022
1O6X
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BU of 1o6x by Molmil
NMR solution structure of the activation domain of human procarboxypeptidase A2
Descriptor: PROCARBOXYPEPTIDASE A2
Authors:Jimenez, M.A, Villegas, V, Santoro, J, Serrano, L, Vendrell, J, Aviles, F.X, Rico, M.
Deposit date:2002-10-17
Release date:2003-01-30
Last modified:2020-01-15
Method:SOLUTION NMR
Cite:NMR Solution Structure of the Activation Domain of Human Procarboxypeptidase A2
Protein Sci., 12, 2003
2JML
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BU of 2jml by Molmil
Solution structure of the N-terminal domain of CarA repressor
Descriptor: DNA BINDING DOMAIN/TRANSCRIPTIONAL REGULATOR
Authors:Jimenez, M, Padmanabhan, S, Gonzalez, C, Perez-Marin, M.C, Elias-Arnanz, M, Murillo, F.J, Rico, M.
Deposit date:2006-11-20
Release date:2007-02-13
Last modified:2023-12-20
Method:SOLUTION NMR
Cite:Structural basis for operator and antirepressor recognition by Myxococcus xanthus CarA repressor.
Mol.Microbiol., 63, 2007
2KSS
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BU of 2kss by Molmil
NMR structure of Myxococcus xanthus antirepressor CarS1
Descriptor: Carotenogenesis protein carS
Authors:Jimenez, M, Gonzalez, C, Padmanabhan, S, Leon, E, Navarro-Aviles, G, Elias-Arnanz, M.
Deposit date:2010-01-13
Release date:2010-05-12
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:A bacterial antirepressor with SH3 domain topology mimics operator DNA in sequestering the repressor DNA recognition helix.
Nucleic Acids Res., 38, 2010
2LT4
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CdnLNt from Myxoccoccus xanthus
Descriptor: Transcriptional regulator, CarD family
Authors:Jimenez, M.A, Padmanabhan, S, Mirassou, Y.
Deposit date:2012-05-14
Release date:2013-11-13
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural Insights into RNA Polymerase Recognition and Essential Function of Myxococcus xanthus CdnL.
Plos One, 9, 2014
2LWJ
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NMR solution structure Myxoccoccus xanthus CdnL
Descriptor: Transcriptional regulator, CarD family
Authors:Jimenez, M, Padmanabhan, S, Mirassou, Y.
Deposit date:2012-08-01
Release date:2014-02-05
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural Insights into RNA Polymerase Recognition and Essential Function of Myxococcus xanthus CdnL.
Plos One, 9, 2014
2NCT
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NMR assignment and structure of a peptide derived from the membrane proximal external region of HIV-1 gp41 in the presence of hexafluoroisopropanol
Descriptor: Envelope glycoprotein gp41
Authors:Jimenez, M, Nieva, J.L, Rujas, E, Partida-Hanon, A, Bruix, M.
Deposit date:2016-04-14
Release date:2017-02-22
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural basis for broad neutralization of HIV-1 through the molecular recognition of 10E8 helical epitope at the membrane interface.
Sci Rep, 6, 2016
2NCS
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NMR assignment and structure of a peptide derived from the membrane proximal external region of HIV-1 gp41 in the presence of dodecylphosphocholine micelles
Descriptor: Envelope glycoprotein gp41
Authors:Jimenez, M, Nieva, J.L, Rujas, E, Partida-Hanon, A, Bruix, M.
Deposit date:2016-04-14
Release date:2017-02-22
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural basis for broad neutralization of HIV-1 through the molecular recognition of 10E8 helical epitope at the membrane interface.
Sci Rep, 6, 2016
2JOI
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BU of 2joi by Molmil
NMR solution structure of hypothetical protein TA0095 from Thermoplasma acidophilum
Descriptor: Hypothetical protein Ta0095
Authors:Jimenez, M, Leon, E, Santoro, J, Rico, M, Yee, A, Structural Genomics Consortium (SGC)
Deposit date:2007-03-13
Release date:2007-10-02
Last modified:2023-12-20
Method:SOLUTION NMR
Cite:Solution structure of the hypothetical protein TA0095 from Thermoplasma acidophilum: A novel superfamily with a two-layer sandwich architecture
Protein Sci., 16, 2007
2LQK
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NMR solution structure of the N-terminal domain of the CdnL protein from Thermus thermophilus
Descriptor: Transcriptional regulator
Authors:Jimenez, M, Padmanabhan, S.
Deposit date:2012-03-09
Release date:2012-08-01
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:NMR structure note: N-terminal domain of Thermus thermophilus CdnL.
J.Biomol.Nmr, 53, 2012
5NWU
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NMR assignment and structure of a peptide derived from the fusion peptide of HIV-1 gp41 in the presence of hexafluoroisopropanol
Descriptor: wtFP-tag,Gp41
Authors:Jimenez, M.A, Serrano, S, Nieva, J.L, Huarte, N.
Deposit date:2017-05-08
Release date:2017-12-06
Last modified:2023-11-15
Method:SOLUTION NMR
Cite:Structure-Related Roles for the Conservation of the HIV-1 Fusion Peptide Sequence Revealed by Nuclear Magnetic Resonance.
Biochemistry, 56, 2017
5NWV
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NMR assignment and structure of a peptide derived from the fusion peptide of HIV-1 gp41 in the presence of dodecylphosphocholine micelles
Descriptor: scrFP-tag,Gp41
Authors:Jimenez, M.A, Serrano, S, Nieva, J.L, Huarte, N.
Deposit date:2017-05-08
Release date:2017-12-06
Last modified:2023-11-15
Method:SOLUTION NMR
Cite:Structure-Related Roles for the Conservation of the HIV-1 Fusion Peptide Sequence Revealed by Nuclear Magnetic Resonance.
Biochemistry, 56, 2017
5NWW
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BU of 5nww by Molmil
NMR assignment and structure of a peptide derived from the fusion peptide of HIV-1 gp41 in the presence of dodecylphosphocholine micelles
Descriptor: scrFP-tag,Gp41
Authors:Jimenez, M.A, Serrano, S, Nieva, J.L, Huarte, N.
Deposit date:2017-05-08
Release date:2017-12-06
Last modified:2023-11-15
Method:SOLUTION NMR
Cite:Structure-Related Roles for the Conservation of the HIV-1 Fusion Peptide Sequence Revealed by Nuclear Magnetic Resonance.
Biochemistry, 56, 2017
5NVP
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NMR assignment and structure of a peptide derived from the fusion peptide of HIV-1 gp41 in the presence of dodecylphosphocholine micelles
Descriptor: Envelope glycoprotein,Gp41
Authors:Jimenez, M.A, Serrano, S, Nieva, J.L, Huarte, N.
Deposit date:2017-05-04
Release date:2017-12-06
Last modified:2023-11-15
Method:SOLUTION NMR
Cite:Structure-Related Roles for the Conservation of the HIV-1 Fusion Peptide Sequence Revealed by Nuclear Magnetic Resonance.
Biochemistry, 56, 2017
2MWT
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BU of 2mwt by Molmil
NMR structure of crotalicidin in DPC micelles
Descriptor: Cathelicidin-like peptide
Authors:Jimenez, M, Zamora-Carreras, H.
Deposit date:2014-11-24
Release date:2015-11-04
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural Dissection of Crotalicidin, a Rattlesnake Venom Cathelicidin, Retrieves a Fragment with Antimicrobial and Antitumor Activity.
J.Med.Chem., 58, 2015
2LT1
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BU of 2lt1 by Molmil
Solution NMR structure of the 72-residue N-terminal domain of Myxococcus xanthus CarD
Descriptor: CarD protein
Authors:Jimenez, M.A, Padmanabhan, S.
Deposit date:2012-05-10
Release date:2013-11-13
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structure-Function Dissection of Myxococcus xanthus CarD N-Terminal Domain, a Defining Member of the CarD_CdnL_TRCF Family of RNA Polymerase Interacting Proteins.
Plos One, 10
5T65
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LIGAND BINDING DOMAIN OF PSEUDOMONAS AERUGINOSA PAO1 AMINO ACID CHEMORECEPTOR PCTA IN COMPLEX WITH L-ILE
Descriptor: ACETATE ION, ISOLEUCINE, Methyl-accepting chemotaxis protein PctA, ...
Authors:Gavira, J.A, Rico-Jimenez, M, Ortega, A, Conejero-Muriel, M, Zhulin, I, Krell, T.
Deposit date:2016-09-01
Release date:2017-09-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:How Bacterial Chemoreceptors Evolve Novel Ligand Specificities
Mbio, 2020
5T7M
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LIGAND BINDING DOMAIN OF PSEUDOMONAS AERUGINOSA PAO1 AMINO ACID CHEMORECEPTOR PCTA IN COMPLEX WITH L-TRP
Descriptor: ACETATE ION, Chemotaxis protein, SODIUM ION, ...
Authors:Gavira, J.A, Rico-Jimenez, M, Ortega, A, Conejero-Muriel, M, Zhulin, I, Krell, T.
Deposit date:2016-09-05
Release date:2017-09-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:How Bacterial Chemoreceptors Evolve Novel Ligand Specificities
Mbio, 2020
7A06
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Structure of human CKa1 in complex with compound o
Descriptor: 1,2-ETHANEDIOL, 1-[(4-phenylphenyl)methyl]-4-pyrrolidin-1-yl-pyridine, Choline kinase alpha
Authors:Serran-Aguilera, L, Mariotto, E, Rubbini, G, Castro Navas, F.C, Marco, C, Carrasco-Jimenez, M.P, Ballarotto, M, Macchiarulo, A, Hurtado-Guerrero, R, Viola, G, Lopez-Cara, L.C.
Deposit date:2020-08-06
Release date:2020-09-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Synthesis, biological evaluation, in silico modeling and crystallization of novel small monocationic molecules with potent antiproliferative activity by dual mechanism.
Eur.J.Med.Chem., 207, 2020
7A04
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BU of 7a04 by Molmil
Structure of human CKa1 in complex with compound b
Descriptor: 1,2-ETHANEDIOL, 1-(phenylmethyl)-4-pyrrolidin-1-yl-pyridin-1-ium, Choline kinase alpha
Authors:Serran-Aguilera, L, Mariotto, E, Rubbini, G, Castro Navas, F.C, Marco, C, Carrasco-Jimenez, M.P, Ballarotto, M, Macchiarulo, A, Hurtado-Guerrero, R, Viola, G, Lopez-Cara, L.C.
Deposit date:2020-08-06
Release date:2020-09-09
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Synthesis, biological evaluation, in silico modeling and crystallization of novel small monocationic molecules with potent antiproliferative activity by dual mechanism.
Eur.J.Med.Chem., 207, 2020
1RML
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BU of 1rml by Molmil
NMR STUDY OF ACID FIBROBLAST GROWTH FACTOR BOUND TO 1,3,6-NAPHTHALENE TRISULPHONATE, 26 STRUCTURES
Descriptor: ACIDIC FIBROBLAST GROWTH FACTOR, NAPHTHALENE TRISULFONATE
Authors:Lozano, R.M, Jimenez, M.A, Santoro, J, Rico, M, Gimenez-Gallego, G.
Deposit date:1998-05-21
Release date:1998-11-11
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure of acidic fibroblast growth factor bound to 1,3, 6-naphthalenetrisulfonate: a minimal model for the anti-tumoral action of suramins and suradistas.
J.Mol.Biol., 281, 1998
5LT9
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Ligand binding domain of Pseudomonas aeruginosa PAO1 amino acid chemoreceptors PctB in complex with L-Arg
Descriptor: ARGININE, GLYCEROL, Methyl-accepting chemotaxis protein PctB, ...
Authors:Gavira, J.A, Rico-Jimenez, M, Ortega, A, Conejero-Muriel, M, Zhulin, I, Krell, T.
Deposit date:2016-09-06
Release date:2017-09-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3 Å)
Cite:How Bacterial Chemoreceptors Evolve Novel Ligand Specificities
Mbio, 2020
7QEJ
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Structure of the ligand binding domain of the antibiotic biosynthesis regulator AdmX from the rhizobacterium Serratia plymuthica A153 bound to the auxin indole-3-acetic acid (IAA).
Descriptor: 1H-INDOL-3-YLACETIC ACID, MAGNESIUM ION, TRANSCRIPTIONAL REGULATOR AdmX
Authors:Gavira, J.A, Rico-Jimenez, M, Castellvi, A, Krell, T, Matilla, M.A.
Deposit date:2021-12-03
Release date:2022-12-14
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Emergence of an Auxin Sensing Domain in Plant-Associated Bacteria.
Mbio, 14, 2023
7QEK
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Structure of the ligand binding domain of the antibiotic biosynthesis regulator AdmX from the rhizobacterium Serratia plymuthica A153 bound to the auxin indole-3-piruvic acid (IPA).
Descriptor: 3-(1H-INDOL-3-YL)-2-OXOPROPANOIC ACID, MAGNESIUM ION, regulator AdmX
Authors:Gavira, J.A, Rico-Jimenez, M, Castellvi, A, Krell, T, Matilla, M.A.
Deposit date:2021-12-03
Release date:2022-12-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Emergence of an Auxin Sensing Domain in Plant-Associated Bacteria.
Mbio, 14, 2023

 

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