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PDB: 31 results

6ENO
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BU of 6eno by Molmil
Double cubane cluster oxidoreductase
Descriptor: CITRIC ACID, Dehydratase family protein, Double cubane cluster, ...
Authors:Jeoung, J.H, Dobbek, H.
Deposit date:2017-10-05
Release date:2018-03-14
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.635 Å)
Cite:ATP-dependent substrate reduction at an [Fe8S9] double-cubane cluster.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6G2G
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BU of 6g2g by Molmil
Fe-S assembly Cfd1
Descriptor: Cytosolic Fe-S cluster assembly factor CFD1, IRON/SULFUR CLUSTER, SULFATE ION
Authors:Jeoung, J.H, Dobbek, H.
Deposit date:2018-03-23
Release date:2019-01-23
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Function and crystal structure of the dimeric P-loop ATPase CFD1 coordinating an exposed [4Fe-4S] cluster for transfer to apoproteins.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
7B9A
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BU of 7b9a by Molmil
CooS-V with Xe-soaked
Descriptor: 3,5-dioxa-7-thia-1-thionia-2$l^{2},4$l^{2},6$l^{3},8$l^{2}-tetraferrabicyclo[4.2.0]octane, BROMIDE ION, Carbon monoxide dehydrogenase, ...
Authors:Jeoung, J.H, Dobbek, H.
Deposit date:2020-12-14
Release date:2022-01-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A Morphing [4Fe-3S-nO]-Cluster within a Carbon Monoxide Dehydrogenase Scaffold.
Angew.Chem.Int.Ed.Engl., 61, 2022
7B7Q
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BU of 7b7q by Molmil
CooS-V with oxidized hybrid cluster
Descriptor: 3,5-dioxa-7-thia-1-thionia-2$l^{2},4$l^{2},6$l^{3},8$l^{2}-tetraferrabicyclo[4.2.0]octane, Carbon monoxide dehydrogenase, DI(HYDROXYETHYL)ETHER, ...
Authors:Jeoung, J.H, Dobbek, H.
Deposit date:2020-12-11
Release date:2022-01-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:A Morphing [4Fe-3S-nO]-Cluster within a Carbon Monoxide Dehydrogenase Scaffold.
Angew.Chem.Int.Ed.Engl., 61, 2022
7B7T
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BU of 7b7t by Molmil
CooS-V with oxidized hybrid cluster
Descriptor: (R,R)-2,3-BUTANEDIOL, Carbon monoxide dehydrogenase, DI(HYDROXYETHYL)ETHER, ...
Authors:Jeoung, J.H, Dobbek, H.
Deposit date:2020-12-11
Release date:2022-01-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:A Morphing [4Fe-3S-nO]-Cluster within a Carbon Monoxide Dehydrogenase Scaffold.
Angew.Chem.Int.Ed.Engl., 61, 2022
7B95
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BU of 7b95 by Molmil
CooS-V with partially oxidized hybrid cluster by hydroxylamine
Descriptor: (R,R)-2,3-BUTANEDIOL, Carbon monoxide dehydrogenase, DI(HYDROXYETHYL)ETHER, ...
Authors:Jeoung, J.H, Dobbek, H.
Deposit date:2020-12-14
Release date:2022-01-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:A Morphing [4Fe-3S-nO]-Cluster within a Carbon Monoxide Dehydrogenase Scaffold.
Angew.Chem.Int.Ed.Engl., 61, 2022
7B97
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BU of 7b97 by Molmil
CooS-V with oxidized hybrid cluster by hydroxylamine for 30 min
Descriptor: (R,R)-2,3-BUTANEDIOL, 3,5-dioxa-7-thia-1-thionia-2$l^{2},4$l^{2},6$l^{3},8$l^{2}-tetraferrabicyclo[4.2.0]octane, Carbon monoxide dehydrogenase, ...
Authors:Jeoung, J.H, Dobbek, H.
Deposit date:2020-12-14
Release date:2022-01-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:A Morphing [4Fe-3S-nO]-Cluster within a Carbon Monoxide Dehydrogenase Scaffold.
Angew.Chem.Int.Ed.Engl., 61, 2022
2YIV
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BU of 2yiv by Molmil
NI,FE-CODH with n-butylisocyanate state
Descriptor: CARBON MONOXIDE DEHYDROGENASE 2, FE (III) ION, FE(3)-NI(1)-S(4) CLUSTER, ...
Authors:Jeoung, J.H, Dobbek, H.
Deposit date:2011-05-16
Release date:2012-03-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:N-Butyl Isocyanide Oxidation at the [Nife4S4Oh(X)] Cluster of Co Dehydrogenase.
J.Biol.Inorg.Chem., 17, 2012
3B51
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BU of 3b51 by Molmil
Ni,Fe-CODH-600 mV state
Descriptor: Carbon monoxide dehydrogenase 2, FE (II) ION, FE(3)-NI(1)-S(4) CLUSTER, ...
Authors:Jeoung, J.H, Dobbek, H.
Deposit date:2007-10-25
Release date:2007-12-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Carbon dioxide activation at the Ni,Fe-cluster of anaerobic carbon monoxide dehydrogenase.
Science, 318, 2007
3B53
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BU of 3b53 by Molmil
Ni,Fe-CODH-320 mV state
Descriptor: Carbon monoxide dehydrogenase 2, FE (II) ION, FE(3)-NI(1)-S(4) CLUSTER, ...
Authors:Jeoung, J.H, Dobbek, H.
Deposit date:2007-10-25
Release date:2007-12-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Carbon dioxide activation at the Ni,Fe-cluster of anaerobic carbon monoxide dehydrogenase.
Science, 318, 2007
3B52
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BU of 3b52 by Molmil
Ni,Fe-CODH-600 mV state + CO2
Descriptor: CARBON DIOXIDE, Carbon monoxide dehydrogenase 2, FE (II) ION, ...
Authors:Jeoung, J.H, Dobbek, H.
Deposit date:2007-10-25
Release date:2007-12-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Carbon dioxide activation at the Ni,Fe-cluster of anaerobic carbon monoxide dehydrogenase.
Science, 318, 2007
6ELQ
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BU of 6elq by Molmil
Carbon Monoxide Dehydrogenase IV from Carboxydothermus hydrogenoformans
Descriptor: Carbon Monoxide Dehydrogenase, FE(4)-NI(1)-S(5) CLUSTER with Oxygen, IRON/SULFUR CLUSTER
Authors:Domnik, L, Goetzl, S, Jeoung, J.H, Dobbek, H.
Deposit date:2017-09-29
Release date:2018-01-03
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:CODH-IV: A High-Efficiency CO-Scavenging CO Dehydrogenase with Resistance to O2.
Angew. Chem. Int. Ed. Engl., 56, 2017
6QII
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BU of 6qii by Molmil
Xenon derivatization of the F420-reducing [NiFe] hydrogenase complex from Methanosarcina barkeri
Descriptor: (R,R)-2,3-BUTANEDIOL, Coenzyme F420 hydrogenase subunit alpha, Coenzyme F420 hydrogenase subunit beta, ...
Authors:Ilina, Y, Lorent, C, Katz, S, Jeoung, J.H, Shima, S, Horch, M, Zebger, I, Dobbek, H.
Deposit date:2019-01-19
Release date:2019-10-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:X-ray Crystallography and Vibrational Spectroscopy Reveal the Key Determinants of Biocatalytic Dihydrogen Cycling by [NiFe] Hydrogenases.
Angew.Chem.Int.Ed.Engl., 58, 2019
6QGT
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BU of 6qgt by Molmil
The carbon monoxide inhibition of F420-reducing [NiFe] hydrogenase complex from Methanosarcina barkeri
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, (R,R)-2,3-BUTANEDIOL, Coenzyme F420 hydrogenase subunit beta, ...
Authors:Ilina, Y, Lorent, C, Katz, S, Jeoung, J.H, Shima, S, Horch, M, Zebger, I, Dobbek, H.
Deposit date:2019-01-12
Release date:2019-10-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.988 Å)
Cite:X-ray Crystallography and Vibrational Spectroscopy Reveal the Key Determinants of Biocatalytic Dihydrogen Cycling by [NiFe] Hydrogenases.
Angew.Chem.Int.Ed.Engl., 58, 2019
6QGR
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BU of 6qgr by Molmil
The F420-reducing [NiFe] hydrogenase complex from Methanosarcina barkeri at the Nia-S state
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, (R,R)-2,3-BUTANEDIOL, Coenzyme F420 hydrogenase subunit alpha, ...
Authors:Ilina, Y, Lorent, C, Katz, S, Jeoung, J.H, Shima, S, Horch, M, Zebger, I, Dobbek, H.
Deposit date:2019-01-12
Release date:2019-10-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.839 Å)
Cite:X-ray Crystallography and Vibrational Spectroscopy Reveal the Key Determinants of Biocatalytic Dihydrogen Cycling by [NiFe] Hydrogenases.
Angew.Chem.Int.Ed.Engl., 58, 2019
5AA5
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BU of 5aa5 by Molmil
Actinobacterial-type NiFe-hydrogenase from Ralstonia eutropha H16 at 2.85 Angstrom resolution
Descriptor: IRON/SULFUR CLUSTER, MALONIC ACID, NIFE-HYDROGENASE LARGE SUBUNIT, ...
Authors:Schaefer, C, Bommer, M, Hennig, S, Jeoung, J.H, Dobbek, H, Lenz, O.
Deposit date:2015-07-23
Release date:2016-01-20
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.497 Å)
Cite:Structure of an Actinobacterial-Type [Nife]-Hydrogenase Reveals Insight Into O2-Tolerant H2 Oxidation.
Structure, 24, 2016
4EMJ
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BU of 4emj by Molmil
Complex between the reductase and ferredoxin components of toluene dioxygenase
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, TodA, ...
Authors:Lin, T.Y, Werther, T, Jeoung, J.H, Dobbek, H.
Deposit date:2012-04-12
Release date:2012-09-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Suppression of Electron Transfer to Dioxygen by Charge Transfer and Electron Transfer Complexes in the FAD-dependent Reductase Component of Toluene Dioxygenase.
J.Biol.Chem., 287, 2012
4EMI
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BU of 4emi by Molmil
Toluene dioxygenase reductase in reduced state in complex with NAD+
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, TodA
Authors:Lin, T.Y, Werther, T, Jeoung, J.H, Dobbek, H.
Deposit date:2012-04-12
Release date:2012-09-26
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.806 Å)
Cite:Suppression of Electron Transfer to Dioxygen by Charge Transfer and Electron Transfer Complexes in the FAD-dependent Reductase Component of Toluene Dioxygenase.
J.Biol.Chem., 287, 2012
4C1N
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BU of 4c1n by Molmil
Corrinoid protein reactivation complex with activator
Descriptor: CARBON MONOXIDE DEHYDROGENASE CORRINOID/IRON-SULFUR PROTEIN, GAMMA SUBUNIT, CO DEHYDROGENASE/ACETYL-COA SYNTHASE, ...
Authors:Hennig, S.E, Goetzl, S, Jeoung, J.H, Bommer, M, Lendzian, F, Hildebrandt, P, Dobbek, H.
Deposit date:2013-08-13
Release date:2014-08-13
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:ATP-Induced Electron Transfer by Redox-Selective Partner Recognition
Nat.Commun., 5, 2014
7O0D
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BU of 7o0d by Molmil
monomeric acetyl-CoA synthase in open conformation with methanethiol moiety of CoA bound to nickel proximal
Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CO-methylating acetyl-CoA synthase, ...
Authors:Kreibich, J, Jeoung, J.H, Dobbek, H.
Deposit date:2021-03-26
Release date:2022-04-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Ligand binding at the Ni,Ni-[4Fe-4S] cluster of acetyl-CoA synthase
To Be Published
7NYS
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BU of 7nys by Molmil
monomeric acetyl-CoA synthase in closed conformation with carbon monoxide bound to the Ni proximal of cluster A
Descriptor: $l^{3}-oxidanylidynemethylnickel, 2-[3,8,8,12,12-pentakis(2-hydroxy-2-oxoethyl)-2,7,11-tris(oxidanylidene)-1,4,6,9,10,13-hexaoxa-5$l^{6}-titanaspiro[4.4^{5}.4^{5}]tridecan-3-yl]ethanoic acid, CHLORIDE ION, ...
Authors:Kreibich, J, Jeoung, J.H, Dobbek, H.
Deposit date:2021-03-23
Release date:2022-04-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:Ligand binding at the Ni,Ni-[4Fe-4S] cluster of acetyl-CoA synthase
To Be Published
7NYP
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BU of 7nyp by Molmil
monomeric acetyl-CoA synthase in closed conformation
Descriptor: 2-[3,8,8,12,12-pentakis(2-hydroxy-2-oxoethyl)-2,7,11-tris(oxidanylidene)-1,4,6,9,10,13-hexaoxa-5$l^{6}-titanaspiro[4.4^{5}.4^{5}]tridecan-3-yl]ethanoic acid, CO-methylating acetyl-CoA synthase, DI(HYDROXYETHYL)ETHER, ...
Authors:Kreibich, J, Jeoung, J.H, Dobbek, H.
Deposit date:2021-03-23
Release date:2022-04-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Ligand binding at the Ni,Ni-[4Fe-4S] cluster of acetyl-CoA synthase
To Be Published
7NZ5
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BU of 7nz5 by Molmil
monomeric acetyl-CoA synthase with Zn at the proximal position of cluster A
Descriptor: (R,R)-2,3-BUTANEDIOL, 2-[3,8,8,12,12-pentakis(2-hydroxy-2-oxoethyl)-2,7,11-tris(oxidanylidene)-1,4,6,9,10,13-hexaoxa-5$l^{6}-titanaspiro[4.4^{5}.4^{5}]tridecan-3-yl]ethanoic acid, CITRIC ACID, ...
Authors:Kreibich, J, Jeoung, J.H, Dobbek, H.
Deposit date:2021-03-23
Release date:2022-04-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Ligand binding at the Ni,Ni-[4Fe-4S] cluster of acetyl-CoA synthase
To Be Published
2YCL
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BU of 2ycl by Molmil
complete structure of the corrinoid,iron-sulfur protein including the N-terminal domain with a 4Fe-4S cluster
Descriptor: CARBON MONOXIDE DEHYDROGENASE CORRINOID/IRON-SULFUR PROTEIN, GAMMA SUBUNIT, CO DEHYDROGENASE/ACETYL-COA SYNTHASE, ...
Authors:Goetzl, S, Jeoung, J.H, Hennig, S.E, Dobbek, H.
Deposit date:2011-03-16
Release date:2011-06-08
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural Basis for Electron and Methyl-Group Transfer in a Methyltransferase System Operating in the Reductive Acetyl-Coa Pathway
J.Mol.Biol., 411, 2011
2YCI
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BU of 2yci by Molmil
methyltransferase native
Descriptor: 5-METHYLTETRAHYDROFOLATE CORRINOID/IRON SULFUR PROTEIN METHYLTRANSFERASE, SULFATE ION
Authors:Goetzl, S, Jeoung, J.H, Hennig, S.E, Dobbek, H.
Deposit date:2011-03-16
Release date:2011-06-08
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structural Basis for Electron and Methyl-Group Transfer in a Methyltransferase System Operating in the Reductive Acetyl-Coa Pathway
J.Mol.Biol., 411, 2011

 

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