Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 77 results

5FLJ
DownloadVisualize
BU of 5flj by Molmil
enzyme-substrate-dioxygen complex of Ni-quercetinase
Descriptor: 3,5,7,3',4'-PENTAHYDROXYFLAVONE, DIMETHYL SULFOXIDE, NICKEL (II) ION, ...
Authors:Jeoung, J.-H, Nianios, D, Fetzner, S, Dobbek, H.
Deposit date:2015-10-26
Release date:2016-06-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.818 Å)
Cite:Quercetin 2,4-Dioxygenase Activates Dioxygen in a Side-on O2 -Ni Complex.
Angew.Chem.Int.Ed.Engl., 55, 2016
5FLI
DownloadVisualize
BU of 5fli by Molmil
enzyme-substrate complex of Ni-quercetinase
Descriptor: 3,5,7,3',4'-PENTAHYDROXYFLAVONE, NICKEL (II) ION, QUERCETINASE QUED
Authors:Jeoung, J.-H, Nianios, D, Fetzner, S, Dobbek, H.
Deposit date:2015-10-26
Release date:2016-06-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Quercetin 2,4-Dioxygenase Activates Dioxygen in a Side-On O2-Ni Complex.
Angew. Chem. Int. Ed. Engl., 55, 2016
5FLH
DownloadVisualize
BU of 5flh by Molmil
Free state of Ni-quercetinase
Descriptor: DIMETHYL SULFOXIDE, NICKEL (II) ION, NITRATE ION, ...
Authors:Jeoung, J.-H, Nianios, D, Fetzner, S, Dobbek, H.
Deposit date:2015-10-26
Release date:2016-06-01
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.802 Å)
Cite:Quercetin 2,4-Dioxygenase Activates Dioxygen in a Side-on O2 -Ni Complex.
Angew.Chem.Int.Ed.Engl., 55, 2016
3I39
DownloadVisualize
BU of 3i39 by Molmil
NI,FE-CODH-320 MV+CN state
Descriptor: CYANIDE ION, Carbon monoxide dehydrogenase 2, FE (II) ION, ...
Authors:Jeoung, J.-H, Dobbek, H.
Deposit date:2009-06-30
Release date:2009-08-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Structural basis of cyanide inhibition of Ni, Fe-containing carbon monoxide dehydrogenase
J.Am.Chem.Soc., 131, 2009
3ZDS
DownloadVisualize
BU of 3zds by Molmil
Structure of homogentisate 1,2-dioxygenase in complex with reaction intermediates of homogentisate with oxygen.
Descriptor: 2-(3,6-DIHYDROXYPHENYL)ACETIC ACID, 2-(6-oxidanyl-3-oxidanylidene-cyclohexa-1,4-dien-1-yl)ethanoic acid, 2-[(6R)-6-(dioxidanyl)-6-oxidanyl-3-oxidanylidene-cyclohexa-1,4-dien-1-yl]ethanoic acid, ...
Authors:Jeoung, J.-H, Bommer, M, Lin, T.-Y, Dobbek, H.
Deposit date:2012-11-30
Release date:2013-07-24
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Visualizing the Substrate-, Superoxo-, Alkylperoxo- and Product-Bound States at the Non-Heme Fe(II) Site of Homogentisate Dioxygenase
Proc.Natl.Acad.Sci.USA, 110, 2013
6G2G
DownloadVisualize
BU of 6g2g by Molmil
Fe-S assembly Cfd1
Descriptor: Cytosolic Fe-S cluster assembly factor CFD1, IRON/SULFUR CLUSTER, SULFATE ION
Authors:Jeoung, J.H, Dobbek, H.
Deposit date:2018-03-23
Release date:2019-01-23
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Function and crystal structure of the dimeric P-loop ATPase CFD1 coordinating an exposed [4Fe-4S] cluster for transfer to apoproteins.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
7B7Q
DownloadVisualize
BU of 7b7q by Molmil
CooS-V with oxidized hybrid cluster
Descriptor: 3,5-dioxa-7-thia-1-thionia-2$l^{2},4$l^{2},6$l^{3},8$l^{2}-tetraferrabicyclo[4.2.0]octane, Carbon monoxide dehydrogenase, DI(HYDROXYETHYL)ETHER, ...
Authors:Jeoung, J.H, Dobbek, H.
Deposit date:2020-12-11
Release date:2022-01-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:A Morphing [4Fe-3S-nO]-Cluster within a Carbon Monoxide Dehydrogenase Scaffold.
Angew.Chem.Int.Ed.Engl., 61, 2022
7B7T
DownloadVisualize
BU of 7b7t by Molmil
CooS-V with oxidized hybrid cluster
Descriptor: (R,R)-2,3-BUTANEDIOL, Carbon monoxide dehydrogenase, DI(HYDROXYETHYL)ETHER, ...
Authors:Jeoung, J.H, Dobbek, H.
Deposit date:2020-12-11
Release date:2022-01-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:A Morphing [4Fe-3S-nO]-Cluster within a Carbon Monoxide Dehydrogenase Scaffold.
Angew.Chem.Int.Ed.Engl., 61, 2022
7O93
DownloadVisualize
BU of 7o93 by Molmil
diMn-sulerythrin
Descriptor: (R,R)-2,3-BUTANEDIOL, CHLORIDE ION, HYDROGEN PEROXIDE, ...
Authors:Jeoung, J.-H, Dobbek, H.
Deposit date:2021-04-15
Release date:2021-12-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Bimetallic Mn, Fe, Co, and Ni Sites in a Four-Helix Bundle Protein: Metal Binding, Structure, and Peroxide Activation.
Inorg.Chem., 60, 2021
7O9C
DownloadVisualize
BU of 7o9c by Molmil
diNi-sulerythrin treated by hydrogen perxoide
Descriptor: CHLORIDE ION, NICKEL (II) ION, Sulerythrin
Authors:Jeoung, J.-H, Dobbek, H.
Deposit date:2021-04-15
Release date:2021-12-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Bimetallic Mn, Fe, Co, and Ni Sites in a Four-Helix Bundle Protein: Metal Binding, Structure, and Peroxide Activation.
Inorg.Chem., 60, 2021
7O8D
DownloadVisualize
BU of 7o8d by Molmil
diFe-sulerythrin oxidised by H2O2
Descriptor: CHLORIDE ION, FE (III) ION, Sulerythrin
Authors:Jeoung, J.-H, Dobbek, H.
Deposit date:2021-04-15
Release date:2021-12-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.12 Å)
Cite:Bimetallic Mn, Fe, Co, and Ni Sites in a Four-Helix Bundle Protein: Metal Binding, Structure, and Peroxide Activation.
Inorg.Chem., 60, 2021
7O9D
DownloadVisualize
BU of 7o9d by Molmil
peroxide-bound diCo-sulerythrin
Descriptor: CHLORIDE ION, COBALT (II) ION, HYDROGEN PEROXIDE, ...
Authors:Jeoung, J.-H, Dobbek, H.
Deposit date:2021-04-15
Release date:2021-12-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:Bimetallic Mn, Fe, Co, and Ni Sites in a Four-Helix Bundle Protein: Metal Binding, Structure, and Peroxide Activation.
Inorg.Chem., 60, 2021
7O99
DownloadVisualize
BU of 7o99 by Molmil
diMn-sulerythrin
Descriptor: CHLORIDE ION, COBALT (II) ION, Sulerythrin
Authors:Jeoung, J.-H, Dobbek, H.
Deposit date:2021-04-15
Release date:2021-12-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:Bimetallic Mn, Fe, Co, and Ni Sites in a Four-Helix Bundle Protein: Metal Binding, Structure, and Peroxide Activation.
Inorg.Chem., 60, 2021
7O91
DownloadVisualize
BU of 7o91 by Molmil
diMn-sulerythrin
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, MANGANESE (II) ION, ...
Authors:Jeoung, J.-H, Dobbek, H.
Deposit date:2021-04-15
Release date:2021-12-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Bimetallic Mn, Fe, Co, and Ni Sites in a Four-Helix Bundle Protein: Metal Binding, Structure, and Peroxide Activation.
Inorg.Chem., 60, 2021
7O9E
DownloadVisualize
BU of 7o9e by Molmil
diNi-sulerythrin
Descriptor: CHLORIDE ION, NICKEL (II) ION, Sulerythrin
Authors:Jeoung, J.-H, Dobbek, H.
Deposit date:2021-04-15
Release date:2021-12-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Bimetallic Mn, Fe, Co, and Ni Sites in a Four-Helix Bundle Protein: Metal Binding, Structure, and Peroxide Activation.
Inorg.Chem., 60, 2021
7O8A
DownloadVisualize
BU of 7o8a by Molmil
diFe-sulerythrin reduced with Na-dithionite
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, FE (III) ION, ...
Authors:Jeoung, J.-H, Dobbek, H.
Deposit date:2021-04-15
Release date:2021-12-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:Bimetallic Mn, Fe, Co, and Ni Sites in a Four-Helix Bundle Protein: Metal Binding, Structure, and Peroxide Activation.
Inorg.Chem., 60, 2021
7B9A
DownloadVisualize
BU of 7b9a by Molmil
CooS-V with Xe-soaked
Descriptor: 3,5-dioxa-7-thia-1-thionia-2$l^{2},4$l^{2},6$l^{3},8$l^{2}-tetraferrabicyclo[4.2.0]octane, BROMIDE ION, Carbon monoxide dehydrogenase, ...
Authors:Jeoung, J.H, Dobbek, H.
Deposit date:2020-12-14
Release date:2022-01-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A Morphing [4Fe-3S-nO]-Cluster within a Carbon Monoxide Dehydrogenase Scaffold.
Angew.Chem.Int.Ed.Engl., 61, 2022
7O90
DownloadVisualize
BU of 7o90 by Molmil
Mono-Fe-sulerythrin
Descriptor: CHLORIDE ION, FE (III) ION, Sulerythrin
Authors:Jeoung, J.-H, Dobbek, H.
Deposit date:2021-04-15
Release date:2021-12-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Bimetallic Mn, Fe, Co, and Ni Sites in a Four-Helix Bundle Protein: Metal Binding, Structure, and Peroxide Activation.
Inorg.Chem., 60, 2021
7O89
DownloadVisualize
BU of 7o89 by Molmil
sulerythrin without metals (apo-state)
Descriptor: CHLORIDE ION, Sulerythrin
Authors:Jeoung, J.-H, Dobbek, H.
Deposit date:2021-04-15
Release date:2021-12-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:Bimetallic Mn, Fe, Co, and Ni Sites in a Four-Helix Bundle Protein: Metal Binding, Structure, and Peroxide Activation.
Inorg.Chem., 60, 2021
3KJI
DownloadVisualize
BU of 3kji by Molmil
Zn and ADP bound state of CooC1
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC, ...
Authors:Jeoung, J.-H, Dobbek, H.
Deposit date:2009-11-03
Release date:2010-01-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Crystal Structure of the ATP-Dependent Maturation Factor of Ni,Fe-Containing Carbon Monoxide Dehydrogenases
J.Mol.Biol., 396, 2010
3KJH
DownloadVisualize
BU of 3kjh by Molmil
Zn-bound state of CooC1
Descriptor: CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC, ZINC ION
Authors:Jeoung, J.-H, Dobbek, H.
Deposit date:2009-11-03
Release date:2010-01-19
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure of the ATP-Dependent Maturation Factor of Ni,Fe-Containing Carbon Monoxide Dehydrogenases
J.Mol.Biol., 396, 2010
3KJG
DownloadVisualize
BU of 3kjg by Molmil
ADP-bound state of CooC1
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC
Authors:Jeoung, J.-H, Dobbek, H.
Deposit date:2009-11-03
Release date:2010-01-19
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of the ATP-Dependent Maturation Factor of Ni,Fe-Containing Carbon Monoxide Dehydrogenases
J.Mol.Biol., 396, 2010
7B95
DownloadVisualize
BU of 7b95 by Molmil
CooS-V with partially oxidized hybrid cluster by hydroxylamine
Descriptor: (R,R)-2,3-BUTANEDIOL, Carbon monoxide dehydrogenase, DI(HYDROXYETHYL)ETHER, ...
Authors:Jeoung, J.H, Dobbek, H.
Deposit date:2020-12-14
Release date:2022-01-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:A Morphing [4Fe-3S-nO]-Cluster within a Carbon Monoxide Dehydrogenase Scaffold.
Angew.Chem.Int.Ed.Engl., 61, 2022
7B97
DownloadVisualize
BU of 7b97 by Molmil
CooS-V with oxidized hybrid cluster by hydroxylamine for 30 min
Descriptor: (R,R)-2,3-BUTANEDIOL, 3,5-dioxa-7-thia-1-thionia-2$l^{2},4$l^{2},6$l^{3},8$l^{2}-tetraferrabicyclo[4.2.0]octane, Carbon monoxide dehydrogenase, ...
Authors:Jeoung, J.H, Dobbek, H.
Deposit date:2020-12-14
Release date:2022-01-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:A Morphing [4Fe-3S-nO]-Cluster within a Carbon Monoxide Dehydrogenase Scaffold.
Angew.Chem.Int.Ed.Engl., 61, 2022
4AQ2
DownloadVisualize
BU of 4aq2 by Molmil
resting state of homogentisate 1,2-dioxygenase
Descriptor: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FE (III) ION, HOMOGENTISATE 1,2-DIOXYGENASE
Authors:Jeoung, J.-H, Lin, T.-Y, Bommer, M, Dobbek, H.
Deposit date:2012-04-12
Release date:2013-04-24
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Visualizing the Substrate-, Superoxo-, Alkylperoxo-, and Product-Bound States at the Nonheme Fe(II) Site of Homogentisate Dioxygenase.
Proc.Natl.Acad.Sci.USA, 110, 2013

 

1234>

221716

PDB entries from 2024-06-26

PDB statisticsPDBj update infoContact PDBjnumon