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PDB: 2129 results

7QWT
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BU of 7qwt by Molmil
Rieske non-heme iron monooxygenase for guaiacol O-demethylation
Descriptor: FE (III) ION, FE2/S2 (INORGANIC) CLUSTER, Rieske (2Fe-2S) domain protein
Authors:Hinchen, D.J, Zahn, M, Bleem, A, Beckham, G.T, McGeehan, J.E.
Deposit date:2022-01-25
Release date:2022-06-01
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (3.712 Å)
Cite:Discovery, characterization, and metabolic engineering of Rieske non-heme iron monooxygenases for guaiacol O-demethylation
Chem Catal, 2022
2VIX
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BU of 2vix by Molmil
Methylated Shigella flexneri MxiC
Descriptor: ACETATE ION, GLYCEROL, PROTEIN MXIC
Authors:Deane, J.E, Roversi, P, King, C, Johnson, S, Lea, S.M.
Deposit date:2007-12-05
Release date:2008-03-11
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Structures of the Shigella Flexneri Type 3 Secretion System Protein Mxic Reveal Conformational Variability Amongst Homologues.
J.Mol.Biol., 377, 2008
6DJD
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BU of 6djd by Molmil
Crystal structure of Tdp1 catalytic domain in complex with Zenobia fragment ZT1982 (single soak)
Descriptor: 1,2-ETHANEDIOL, 4-hydroxyquinoline-3-carboxylic acid, Tyrosyl-DNA phosphodiesterase 1
Authors:Lountos, G.T, Zhao, X.Z, Kiselev, E, Tropea, J.E, Needle, D, Burke Jr, T.R, Pommier, Y, Waugh, D.S.
Deposit date:2018-05-25
Release date:2019-05-29
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.777 Å)
Cite:Identification of a ligand binding hot spot and structural motifs replicating aspects of tyrosyl-DNA phosphodiesterase I (TDP1) phosphoryl recognition by crystallographic fragment cocktail screening.
Nucleic Acids Res., 2019
1U2S
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BU of 1u2s by Molmil
X-Ray structure of the sucrose-phosphatase (SPP) from Synechocystis sp. PCC6803 in complex with glucose
Descriptor: MAGNESIUM ION, alpha-D-glucopyranose, sucrose-phosphatase
Authors:Fieulaine, S, Lunn, J.E, Borel, F, Ferrer, J.-L.
Deposit date:2004-07-20
Release date:2005-06-14
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The structure of a cyanobacterial sucrose-phosphatase reveals the sugar tongs that release free sucrose in the cell
PLANT CELL, 17, 2005
5D5L
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BU of 5d5l by Molmil
PreQ1-II riboswitch with an engineered G-U wobble pair bound to Cs+
Descriptor: 7-DEAZA-7-AMINOMETHYL-GUANINE, CESIUM ION, MAGNESIUM ION, ...
Authors:Wedekind, J.E, Liberman, J.A, Salim, M.
Deposit date:2015-08-10
Release date:2016-08-10
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Cesium(I) binding to G-U-wobble base pairs in preQ1 riboswitches with implications for crystallographic phasing
to be published
1DLE
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BU of 1dle by Molmil
FACTOR B SERINE PROTEASE DOMAIN
Descriptor: COMPLEMENT FACTOR B
Authors:Jing, H, Xu, Y, Carson, M, Moore, D, Macon, K.J, Volanakis, J.E, Narayana, S.V.
Deposit date:1999-12-09
Release date:2000-12-13
Last modified:2019-11-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:New structural motifs on the chymotrypsin fold and their potential roles in complement factor B.
EMBO J., 19, 2000
4Y2E
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BU of 4y2e by Molmil
Crystal structure of the catalytic domain of human dual-specificity phosphatase 7 (C232S)
Descriptor: Dual specificity protein phosphatase 7, PHOSPHATE ION
Authors:Lountos, G.T, Austin, B.P, Tropea, J.E, Waugh, D.S.
Deposit date:2015-02-09
Release date:2015-06-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Structure of human dual-specificity phosphatase 7, a potential cancer drug target.
Acta Crystallogr.,Sect.F, 71, 2015
2WG8
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BU of 2wg8 by Molmil
Structure of Oryza Sativa (Rice) PLA2, orthorhombic crystal form
Descriptor: CALCIUM ION, PUTATIVE PHOSPHOLIPASE A2, SODIUM ION
Authors:Guy, J.E, Stahl, U, Lindqvist, Y.
Deposit date:2009-04-16
Release date:2009-06-02
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of a Class Xib Phospholipase A2 (Pla2): Rice (Oryza Sativa) Isoform-2 Pla2 and an Octanoate Complex.
J.Biol.Chem., 284, 2009
2WAB
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BU of 2wab by Molmil
Structure of an active site mutant of a family two carbohydrate esterase from Clostridium thermocellum in complex with celluohexase
Descriptor: ENDOGLUCANASE E, GLYCEROL, IODIDE ION, ...
Authors:Montainer, C, Money, V.A, Pires, V.M.R, Flint, J.E, Pinheiro, B.A, Goyal, A, Prates, J.A.M, Izumi, A, Stalbrand, H, Kolenova, K, Topakas, E, Dodson, E.J, Bolam, D.N, Davies, G.J, Fontes, C.M.G.A, Gilbert, H.J.
Deposit date:2009-02-04
Release date:2009-03-24
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The Active Site of a Carbohydrate Esterase Displays Divergent Catalytic and Noncatalytic Binding Functions.
Plos Biol., 7, 2009
8VGQ
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BU of 8vgq by Molmil
CryoEM structure of GNE-1952-alkylated KRAS G12C in complex with engineered conformationally rigid Fab 2H11.4DS
Descriptor: 1-{4-[(7M)-6-methyl-7-(5-methyl-2H-indazol-4-yl)quinazolin-4-yl]piperazin-1-yl}propan-1-one, Fab 2H11.4DS heavy chain, Fab 2H11.4DS light chain, ...
Authors:Kung, J.E, Sudhamsu, J.
Deposit date:2023-12-27
Release date:2024-10-30
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Disulfi de constrained Fabs overcome target size limitation for high-resolution single-particle cryo-EM.
Biorxiv, 2024
6BVB
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BU of 6bvb by Molmil
Crystal structure of HIF-2alpha-pVHL-elongin B-elongin C
Descriptor: Elongin-B, Elongin-C, Hypoxia-Inducible Factor 2 alpha, ...
Authors:Tarade, D, Ohh, M, Lee, J.E.
Deposit date:2017-12-12
Release date:2018-08-01
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.002 Å)
Cite:HIF-2 alpha-pVHL complex reveals broad genotype-phenotype correlations in HIF-2 alpha-driven disease.
Nat Commun, 9, 2018
8VGJ
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BU of 8vgj by Molmil
CryoEM structure of tryptase in complex with engineered conformationally rigid anti-tryptase Fab E104.v1.4DS
Descriptor: Fab E104.v1.4DS heavy chain, Fab E104.v1.4DS light chain, Tryptase alpha/beta-1
Authors:Kung, J.E, Johnson, M.C, Sudhamsu, J.
Deposit date:2023-12-27
Release date:2024-10-30
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Disulfi de constrained Fabs overcome target size limitation for high-resolution single-particle cryo-EM.
Biorxiv, 2024
8VGI
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BU of 8vgi by Molmil
CryoEM structure of tryptase in complex with engineered conformationally rigid anti-tryptase Fab E104.v1.2DS
Descriptor: Fab E104.v1.2DS heavy chain, Fab E104.v1.2DS light chain, Tryptase alpha/beta-1
Authors:Kung, J.E, Johnson, M.C, Sudhamsu, J.
Deposit date:2023-12-27
Release date:2024-10-30
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Disulfi de constrained Fabs overcome target size limitation for high-resolution single-particle cryo-EM.
Biorxiv, 2024
8VGK
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BU of 8vgk by Molmil
CryoEM structure of tryptase in complex with engineered conformationally rigid anti-tryptase Fab E104.v1.6DS
Descriptor: Fab E104.v1.6DS light chain, Tryptase alpha/beta-1
Authors:Kung, J.E, Johnson, M.C, Sudhamsu, J.
Deposit date:2023-12-27
Release date:2024-10-30
Method:ELECTRON MICROSCOPY (2.4 Å)
Cite:Disulfi de constrained Fabs overcome target size limitation for high-resolution single-particle cryo-EM.
Biorxiv, 2024
2WG7
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BU of 2wg7 by Molmil
Structure of Oryza Sativa (Rice) PLA2
Descriptor: CALCIUM ION, PUTATIVE PHOSPHOLIPASE A2, SODIUM ION
Authors:Guy, J.E, Stahl, U, Lindqvist, Y.
Deposit date:2009-04-16
Release date:2009-06-02
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of a Class Xib Phospholipase A2 (Pla2): Rice (Oryza Sativa) Isoform-2 Pla2 and an Octanoate Complex.
J.Biol.Chem., 284, 2009
5EEY
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BU of 5eey by Molmil
RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 11.6 MGy
Descriptor: (GAGUU)10GAG 53-NUCLEOTIDE RNA, TRYPTOPHAN, Transcription attenuation protein MtrB
Authors:Bury, C.S, McGeehan, J.E, Garman, E.F, Shevtsov, M.B.
Deposit date:2015-10-23
Release date:2016-05-04
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:RNA protects a nucleoprotein complex against radiation damage.
Acta Crystallogr D Struct Biol, 72, 2016
6BOY
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BU of 6boy by Molmil
Crystal structure of DDB1-CRBN-BRD4(BD1) complex bound to dBET6 PROTAC.
Descriptor: 2-[(6S)-4-(4-chlorophenyl)-2,3,9-trimethyl-6H-thieno[3,2-f][1,2,4]triazolo[4,3-a][1,4]diazepin-6-yl]-N-(8-{[({2-[(3S)-2,6-dioxopiperidin-3-yl]-1,3-dioxo-2,3-dihydro-1H-isoindol-4-yl}oxy)acetyl]amino}octyl)acetamide, Bromodomain-containing protein 4, DNA damage-binding protein 1, ...
Authors:Nowak, R.P, DeAngelo, S.L, Buckley, D, Bradner, J.E, Fischer, E.S.
Deposit date:2017-11-21
Release date:2018-05-30
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.33 Å)
Cite:Plasticity in binding confers selectivity in ligand-induced protein degradation.
Nat. Chem. Biol., 14, 2018
1RRI
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BU of 1rri by Molmil
DHNA complex with 3-(5-amino-7-hydroxy-[1,2,3] triazolo [4,5-d]pyrimidin-2-yl)-benzoic acid
Descriptor: 3-(5-AMINO-7-HYDROXY-[1,2,3]TRIAZOLO[4,5-D]PYRIMIDIN-2-YL)-BENZOIC ACID, Dihydroneopterin aldolase
Authors:Sanders, W.J, Nienaber, V.L, Lerner, C.G, McCall, J.O, Merrick, S.M, Swanson, S.J, Harlan, J.E, Stoll, V.S, Stamper, G.F, Betz, S.F, Condroski, K.R, Meadows, R.P, Severin, J.M, Walter, K.A, Magdalinos, P, Jakob, C.G, Wagner, R, Beutel, B.A.
Deposit date:2003-12-08
Release date:2004-03-30
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Discovery of Potent Inhibitors of Dihydroneopterin Aldolase Using CrystaLEAD High-Throughput X-ray Crystallographic Screening and Structure-Directed Lead Optimization.
J.Med.Chem., 47, 2004
8VGP
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BU of 8vgp by Molmil
CryoEM structure of Angiopoietin-2 in complex with engineered conformationally rigid Fab 5A12.6DS
Descriptor: Angiopoietin-2, CALCIUM ION, Fab 5A12.6DS heavy chain, ...
Authors:Kung, J.E, Sudhamsu, J.
Deposit date:2023-12-27
Release date:2024-10-30
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Disulfi de constrained Fabs overcome target size limitation for high-resolution single-particle cryo-EM.
Biorxiv, 2024
5EEZ
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BU of 5eez by Molmil
RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 14.2 MGy
Descriptor: (GAGUU)10GAG 53-NUCLEOTIDE RNA, TRYPTOPHAN, Transcription attenuation protein MtrB
Authors:Bury, C.S, McGeehan, J.E, Garman, E.F, Shevtsov, M.B.
Deposit date:2015-10-23
Release date:2016-05-04
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:RNA protects a nucleoprotein complex against radiation damage.
Acta Crystallogr D Struct Biol, 72, 2016
4GON
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BU of 4gon by Molmil
Crystal Structure of E. coli DNA Adenine Methyltransferase in Complex with Indole Aza-SAM
Descriptor: 5'-{[(3S)-3-amino-3-carboxypropyl][2-(1H-indol-3-yl)ethyl]amino}-5'-deoxyadenosine, DNA adenine methylase
Authors:Harmer, J.E, Roach, P.L.
Deposit date:2012-08-20
Release date:2014-02-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Structural Basis of Selective N-6 adenine methyltransferase Inhibition by Transition State Mimic
To be published
1R18
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BU of 1r18 by Molmil
Drosophila protein isoaspartyl methyltransferase with S-adenosyl-L-homocysteine
Descriptor: Protein-L-isoaspartate(D-aspartate)-O-methyltransferase, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Bennett, E.J, Bjerregaard, J, Knapp, J.E, Chavous, D.A, Friedman, A.M, Royer Jr, W.E, O'Connor, C.M.
Deposit date:2003-09-23
Release date:2003-12-09
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Catalytic implications from the Drosophila protein L-isoaspartyl methyltransferase structure and site-directed mutagenesis.
Biochemistry, 42, 2003
5ELB
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BU of 5elb by Molmil
Cholera toxin classical B-pentamer in complex with Lewis-y
Descriptor: BICINE, CALCIUM ION, Cholera enterotoxin B subunit, ...
Authors:Heggelund, J.E, Burschowsky, D, Krengel, U.
Deposit date:2015-11-04
Release date:2016-03-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:High-Resolution Crystal Structures Elucidate the Molecular Basis of Cholera Blood Group Dependence.
Plos Pathog., 12, 2016
2VYO
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BU of 2vyo by Molmil
Chitin deacetylase family member from Encephalitozoon cuniculi
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ...
Authors:Urch, J.E, Hurtado-Guerrero, R, Texier, C, Van Aalten, D.M.F.
Deposit date:2008-07-25
Release date:2008-08-12
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural and Functional Characterization of a Putative Polysaccharide Deacetylase of the Human Parasite Encephalitozoon Cuniculi.
Protein Sci., 18, 2009
5EF0
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BU of 5ef0 by Molmil
RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 16.7 MGy
Descriptor: (GAGUU)10GAG 53-NUCLEOTIDE RNA, TRYPTOPHAN, Transcription attenuation protein MtrB
Authors:Bury, C.S, McGeehan, J.E, Garman, E.F, Shevtsov, M.B.
Deposit date:2015-10-23
Release date:2016-05-04
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:RNA protects a nucleoprotein complex against radiation damage.
Acta Crystallogr D Struct Biol, 72, 2016

226707

数据于2024-10-30公开中

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