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PDB: 6669 results

8U50
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BU of 8u50 by Molmil
Klebsiella pneumoniae DyP peroxidase-loaded encapsulin shell
Descriptor: Klebsiella pneumoniae family 1 encapsulin shell
Authors:Andreas, M.P, Jones, J.A, Giessen, T.W.
Deposit date:2023-09-11
Release date:2024-04-24
Method:ELECTRON MICROSCOPY (2.52 Å)
Cite:Structural basis for peroxidase encapsulation inside the encapsulin from the Gram-negative pathogen Klebsiella pneumoniae.
Nat Commun, 15, 2024
7BAY
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BU of 7bay by Molmil
Crystal structure of CbpF from Streptococcus pneumoniae complexed with a Ytterbium derivative
Descriptor: CHOLINE ION, Choline-binding protein F, GLYCEROL, ...
Authors:Martinez Caballero, S, Hermoso, J.A.
Deposit date:2020-12-16
Release date:2021-07-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:First Lanthanide Complex for De Novo Phasing in Native Protein Crystallography at 1 angstrom Radiation
Acs Appl Bio Mater, 4, 2021
8UIW
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yjdF riboswitch from R. gauvreauii in complex with chelerythrine bound to Fab BL3-6 S97N
Descriptor: 1,2-dimethoxy-12-methyl[1,3]benzodioxolo[5,6-c]phenanthridin-12-ium, Fab BL3-6 S97N heavy chain, Fab BL3-6 S97N light chain, ...
Authors:Krochmal, D, Lewicka, A, Piccirilli, J.A.
Deposit date:2023-10-10
Release date:2024-04-10
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.77 Å)
Cite:Structural basis for promiscuity in ligand recognition by yjdF riboswitch.
Cell Discov, 10, 2024
8UTA
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BU of 8uta by Molmil
yjdF riboswitch from R. gauvreauii in complex with proflavine bound to Fab BL3-6 S97N
Descriptor: Fab BL3-6 S97N heavy chain, Fab BL3-6 S97N light chain, MAGNESIUM ION, ...
Authors:Krochmal, D, Lewicka, A, Piccirilli, J.A.
Deposit date:2023-10-30
Release date:2024-04-10
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.05 Å)
Cite:Structural basis for promiscuity in ligand recognition by yjdF riboswitch.
Cell Discov, 10, 2024
8U51
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BU of 8u51 by Molmil
Klebsiella pneumoniae SUMO-loaded encapsulin shell
Descriptor: Klebsiella pneumoniae family 1 encapsulin shell, SUMO-targeting peptide fusion protein
Authors:Andreas, M.P, Jones, J.A, Giessen, T.W.
Deposit date:2023-09-11
Release date:2024-04-24
Method:ELECTRON MICROSCOPY (2.41 Å)
Cite:Structural basis for peroxidase encapsulation inside the encapsulin from the Gram-negative pathogen Klebsiella pneumoniae.
Nat Commun, 15, 2024
8U4Z
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BU of 8u4z by Molmil
Klebsiella pneumoniae encapsulin-associated DyP peroxidase
Descriptor: Family 1 encapsulin-associated DyP peroxidase, Mesoheme
Authors:Andreas, M.P, Jones, J.A, Giessen, T.W.
Deposit date:2023-09-11
Release date:2024-04-24
Method:ELECTRON MICROSCOPY (2.39 Å)
Cite:Structural basis for peroxidase encapsulation inside the encapsulin from the Gram-negative pathogen Klebsiella pneumoniae.
Nat Commun, 15, 2024
8Q4E
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BU of 8q4e by Molmil
Structure of Legionella pneumophila Lcl C-terminal domain
Descriptor: HbP1
Authors:Rehman, S, Garnett, J.A.
Deposit date:2023-08-06
Release date:2023-12-27
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The Legionella collagen-like protein employs a unique binding mechanism for the recognition of host glycosaminoglycans.
Biorxiv, 2023
8QK8
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BU of 8qk8 by Molmil
Structure of Legionella pneumophila Lcl C-terminal domain bound to sulphate
Descriptor: HbP1, SULFATE ION
Authors:Rehman, S, Garnett, J.A.
Deposit date:2023-09-14
Release date:2023-12-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The Legionella collagen-like protein employs a unique binding mechanism for the recognition of host glycosaminoglycans.
Biorxiv, 2023
1CPT
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BU of 1cpt by Molmil
CRYSTAL STRUCTURE AND REFINEMENT OF CYTOCHROME P450-TERP AT 2.3 ANGSTROMS RESOLUTION
Descriptor: CYTOCHROME P450-TERP, PROTOPORPHYRIN IX CONTAINING FE
Authors:Hasemann, C.A, Ravichandran, K.G, Peterson, J.A, Deisenhofer, J.
Deposit date:1993-11-23
Release date:1994-01-31
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure and refinement of cytochrome P450terp at 2.3 A resolution.
J.Mol.Biol., 236, 1994
7BGS
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BU of 7bgs by Molmil
Archeal holliday junction resolvase from Thermus thermophilus phage 15-6
Descriptor: Holliday junction resolvase, SULFATE ION
Authors:Hakansson, M, Ahlqvist, J, Linares Pasten, J.A, Jasilionis, A, Nordberg Karlsson, E, Al-Karadaghi, S.
Deposit date:2021-01-08
Release date:2022-01-19
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure and initial characterization of a novel archaeal-like Holliday junction-resolving enzyme from Thermus thermophilus phage Tth15-6.
Acta Crystallogr D Struct Biol, 78, 2022
7BNX
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BU of 7bnx by Molmil
Archeal holliday junction resolvase from Thermus thermophilus phage 15-6
Descriptor: Holliday junction resolvase, SULFATE ION
Authors:Hakansson, M, Ahlqvist, J, Linares Pasten, J.A, Jasilionis, A, Nordberg Karlsson, E, Al-Karadaghi, S.
Deposit date:2021-01-22
Release date:2022-02-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.551 Å)
Cite:Crystal structure and initial characterization of a novel archaeal-like Holliday junction-resolving enzyme from Thermus thermophilus phage Tth15-6.
Acta Crystallogr D Struct Biol, 78, 2022
7BKW
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BU of 7bkw by Molmil
Endothiapepsin structure obtained at 100K with fragment BTB09871 bound
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, ...
Authors:Engilberge, S, Huang, C.-Y, Smith, K.M.L, Eris, D, Marsh, M, Wang, M, Wojdyla, J.A.
Deposit date:2021-01-17
Release date:2022-03-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Endothiapepsin structure obtained at 100K with fragment BTB09871 bound
To Be Published
8QIC
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BU of 8qic by Molmil
Structure-based identification of salicylic acid derivatives as malarial threonyl tRNA-synthetase inhibitors
Descriptor: 2-oxidanyl-5-[[4-(phenylmethyl)phenyl]sulfamoyl]benzoic acid, GLYCEROL, Threonine--tRNA ligase, ...
Authors:Rodriguez, J.A, Parisini, E.
Deposit date:2023-09-13
Release date:2024-04-10
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure-based identification of salicylic acid derivatives as malarial threonyl tRNA-synthetase inhibitors.
Plos One, 19, 2024
7BKR
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BU of 7bkr by Molmil
Endothiapepsin structure obtained at 298K and 40 mM DMSO from a dataset collected with JUNGFRAU detector
Descriptor: DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, Endothiapepsin, ...
Authors:Engilberge, S, Huang, C.-Y, Leonarski, F, Wojdyla, J.A, Marsh, M, Olieric, V, Wang, M.
Deposit date:2021-01-17
Release date:2022-03-02
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Endothiapepsin structure obtained at 298K and 40 mM DMSO from a dataset collected with JUNGFRAU detector
To Be Published
7BKV
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BU of 7bkv by Molmil
Endothiapepsin structure obtained at 100K with fragment AC39729 bound
Descriptor: 5-fluoranylpyridin-2-amine, DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, ...
Authors:Engilberge, S, Huang, C.-Y, Smith, K.M.L, Eris, D, Marsh, M, Wang, M, Wojdyla, J.A.
Deposit date:2021-01-17
Release date:2022-03-02
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:Endothiapepsin structure obtained at 100K with fragment AC39729 bound
To Be Published
7BKY
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BU of 7bky by Molmil
Endothiapepsin structure obtained at 298K with fragment BTB09871 bound from a dataset collected with JUNGFRAU detector
Descriptor: DIMETHYL SULFOXIDE, Endothiapepsin, PENTAETHYLENE GLYCOL, ...
Authors:Engilberge, S, Huang, C.-Y, Leonarski, F, Wojdyla, J.A, Marsh, M, Olieric, V, Wang, M.
Deposit date:2021-01-17
Release date:2022-03-02
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Endothiapepsin structure obtained at 298K with fragment BTB09871 bound from a dataset collected with JUNGFRAU detector
To Be Published
8QME
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BU of 8qme by Molmil
Structural characterization of beta-xyloxidase XynB2 from Geobacillus stearothermophilus CECT43
Descriptor: ACETATE ION, Beta-xylosidase, GLYCEROL, ...
Authors:Gavira, J.A, Martinez-Rodriguez, S.
Deposit date:2023-09-22
Release date:2024-03-27
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural Characterization of beta-Xylosidase XynB2 from Geobacillus stearothermophilus CECT43: A Member of the Glycoside Hydrolase Family GH52
Crystals, 14, 2024
7BKS
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BU of 7bks by Molmil
100K endothiapepsin structure obtained in presence of 40 mM DMSO
Descriptor: DI(HYDROXYETHYL)ETHER, DIMETHYL SULFOXIDE, Endothiapepsin, ...
Authors:Engilberge, S, Huang, C.-Y, Smith, K.M.L, Eris, D, Marsh, M, Wang, M, Wojdyla, J.A.
Deposit date:2021-01-17
Release date:2022-03-02
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:100K endothiapepsin structure obtained in presence of 40 mM DMSO
To Be Published
7BKZ
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BU of 7bkz by Molmil
Endothiapepsin structure obtained at 298K after a soaking with fragment AC39729 from a dataset collected with JUNGFRAU detector
Descriptor: DIMETHYL SULFOXIDE, Endothiapepsin
Authors:Engilberge, S, Huang, C.-Y, Leonarski, F, Wojdyla, J.A, Marsh, M, Olieric, V, Wang, M.
Deposit date:2021-01-17
Release date:2022-03-02
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Endothiapepsin structure obtained at 298K after a soaking with fragment AC39729 from a dataset collected with JUNGFRAU detector
To Be Published
7BKU
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BU of 7bku by Molmil
Endothiapepsin structure obtained at 100K with fragment JFD03909 bound
Descriptor: 1,10-PHENANTHROLINE, DIMETHYL SULFOXIDE, Endothiapepsin
Authors:Engilberge, S, Huang, C.-Y, Smith, K.M.L, Eris, D, Marsh, M, Wang, M, Wojdyla, J.A.
Deposit date:2021-01-17
Release date:2022-03-02
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Endothiapepsin structure obtained at 100K with fragment JFD03909 bound
To Be Published
8Q52
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BU of 8q52 by Molmil
A PBP-like protein built from fragments of different folds
Descriptor: Leucine-specific-binding protein,Chemotaxis protein CheY, SULFATE ION
Authors:Shanmugaratnam, S, Toledo-Patino, S, Goetz, S.K, Farias-Rico, J.A, Hocker, B.
Deposit date:2023-08-08
Release date:2024-04-10
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Molecular handcraft of a well-folded protein chimera.
Febs Lett., 598, 2024
8Q3L
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BU of 8q3l by Molmil
Human Gamma-D Crystallin R36S fresh serial crystallographic structure
Descriptor: Gamma-crystallin D
Authors:Yorke, B.A, Hill, J.A.
Deposit date:2023-08-04
Release date:2024-04-17
Last modified:2024-08-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:An ultraviolet-driven rescue pathway for oxidative stress to eye lens protein human gamma-D crystallin.
Commun Chem, 7, 2024
8QQ5
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BU of 8qq5 by Molmil
Structure of WT SpNox DH domain: a bacterial NADPH oxidase.
Descriptor: CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, Oxidoreductase
Authors:Thepaut, M, Petit-Hartlein, I, Vermot, A, Humm, A.S, Dupeux, F, Marquez, J.A, Smith, S, Fieschi, F.
Deposit date:2023-10-03
Release date:2024-05-08
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:X-ray structure and enzymatic study of a bacterial NADPH oxidase highlight the activation mechanism of eukaryotic NOX.
Elife, 13, 2024
8QQ1
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BU of 8qq1 by Molmil
SpNOX dehydrogenase domain, mutant F397W in complex with Flavin adenine dinucleotide (FAD)
Descriptor: BROMIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, Oxidoreductase
Authors:Humm, A.S, Dupeux, F, Vermot, A, Petit-Harleim, I, Fieschi, F, Marquez, J.A.
Deposit date:2023-10-03
Release date:2024-05-08
Method:X-RAY DIFFRACTION (1.941 Å)
Cite:X-ray structure and enzymatic study of a bacterial NADPH oxidase highlight the activation mechanism of eukaryotic NOX.
Elife, 13, 2024
8QQ7
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BU of 8qq7 by Molmil
Structure of SpNOX: a Bacterial NADPH oxidase
Descriptor: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, FAD-binding FR-type domain-containing protein, PROTOPORPHYRIN IX CONTAINING FE
Authors:Thepaut, M, Petit-Hartlein, I, Vermot, A, Chaptal, V, Humm, A.S, Dupeux, F, Marquez, J.A, Smith, S, Fieschi, F.
Deposit date:2023-10-04
Release date:2024-05-08
Method:X-RAY DIFFRACTION (3.62 Å)
Cite:X-ray structure and enzymatic study of a bacterial NADPH oxidase highlight the activation mechanism of eukaryotic NOX.
Elife, 13, 2024

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