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PDB: 42507 件

5J4E
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Crystal structures reveal signaling states of a short blue light photoreceptor protein PpSB1-LOV (Photoexcited state)
分子名称: FLAVIN MONONUCLEOTIDE, Sensory box protein
著者Granzin, J, Batra-Safferling, R.
登録日2016-04-01
公開日2016-06-22
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.67 Å)
主引用文献Signaling States of a Short Blue-Light Photoreceptor Protein PpSB1-LOV Revealed from Crystal Structures and Solution NMR Spectroscopy.
J.Mol.Biol., 428, 2016
7ZYL
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Avidin + Biotin-Tempo
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 6-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-(2,2,6,6-tetramethyl-1-oxidanyl-piperidin-4-yl)hexanamide, Avidin
著者Milani, J, Myasnikov, A, Beckert, B, Nazarov, S, Ansermet, J.P, Saenz, F.
登録日2022-05-25
公開日2023-06-14
実験手法ELECTRON MICROSCOPY (2.08 Å)
主引用文献Avidin + Biotin-Tempo
To Be Published
5JFU
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HIV-1 wild Type protease with GRL-007-14A (a Adamantane P1-Ligand with bis-THF in P2 and benzylamine in P1')
分子名称: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl {(2S,3R)-4-{benzyl[(4-methoxyphenyl)sulfonyl]amino}-3-hydroxy-1-[(3R,5R,7R)-tricyclo[3.3.1.1~3,7~]decan-1-yl]butan-2-yl}carbamate, CHLORIDE ION, Protease
著者Wang, Y.-F, Agniswamy, J, Weber, I.T.
登録日2016-04-19
公開日2016-09-21
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Probing Lipophilic Adamantyl Group as the P1-Ligand for HIV-1 Protease Inhibitors: Design, Synthesis, Protein X-ray Structural Studies, and Biological Evaluation.
J.Med.Chem., 59, 2016
5CKN
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The CUB1-EGF-CUB2 domains of rat MBL-associated serine protease-2 (MASP-2) bound to Ca2+
分子名称: CALCIUM ION, Mannan-binding lectin serine peptidase 2
著者Nan, R, Furze, C.M, Wright, D.W, Gor, J, Wallis, R, Perkins, S.J.
登録日2015-07-15
公開日2017-01-18
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Flexibility in Mannan-Binding Lectin-Associated Serine Proteases-1 and -2 Provides Insight on Lectin Pathway Activation.
Structure, 25, 2017
8A36
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Crystal structure of PpSB1-LOV-K117E mutant (dark state), monoclinic form
分子名称: FLAVIN MONONUCLEOTIDE, Sensory box protein
著者Batra-Safferling, R, Granzin, J.
登録日2022-06-07
公開日2023-07-05
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of PpSB1-LOV-K117E mutant (dark state), monoclinic form
To Be Published
8A5R
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Crystal structure of light-activated DNA-binding protein EL222 from Erythrobacter litoralis crystallized and measured in dark.
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, FLAVIN MONONUCLEOTIDE, ...
著者Koval, T, Chaudhari, A, Fuertes, G, Andersson, I, Dohnalek, J.
登録日2022-06-15
公開日2023-07-05
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献EL222 from Erythrobacter litoralis.
To Be Published
2YG2
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Structure of apolioprotein M in complex with Sphingosine 1-Phosphate
分子名称: (2S,3R,4E)-2-amino-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate, APOLIPOPROTEIN M, CITRATE ANION
著者Christoffersen, C, Obinata, H, Gowda, S, Galvani, S, Ahnstrom, J, Sevvana, M, Egerer-Sieber, C, Muller, Y.A, Hla, T, Nielsen, L, Dahlback, B.
登録日2011-04-11
公開日2011-06-01
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Endothelium-Protective Sphingosine-1-Phosphate Provided by Hdl-Associated Apolipoprotein M.
Proc.Natl.Acad.Sci.USA, 108, 2011
3J3W
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Atomic model of the immature 50S subunit from Bacillus subtilis (state II-a)
分子名称: 50S ribosomal protein L1, 50S ribosomal protein L11, 50S ribosomal protein L13, ...
著者Li, N, Guo, Q, Zhang, Y, Yuan, Y, Ma, C, Lei, J, Gao, N.
登録日2013-04-28
公開日2013-06-12
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (10.7 Å)
主引用文献Cryo-EM structures of the late-stage assembly intermediates of the bacterial 50S ribosomal subunit
Nucleic Acids Res., 41, 2013
2YBQ
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The x-ray structure of the SAM-dependent uroporphyrinogen III methyltransferase NirE from Pseudomonas aeruginosa in complex with SAH and uroporphyrinogen III
分子名称: METHYLTRANSFERASE, S-ADENOSYL-L-HOMOCYSTEINE, UROPORPHYRINOGEN III
著者Storbeck, S, Saha, S, Krausze, J, Klink, B.U, Heinz, D.W, Layer, G.
登録日2011-03-09
公開日2011-06-01
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure of the Heme D1 Biosynthesis Enzyme Nire in Complex with its Substrate Reveals New Insights Into the Catalytic Mechanism of S-Adenosyl-L-Methionine-Dependent Uroporphyrinogen III Methyltransferases.
J.Biol.Chem., 286, 2011
5J5J
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Crystal structure of a chimera of human Desmocollin-2 EC1 and human Desmoglein-2 EC2-EC5
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
著者Brasch, J, Harrison, O.J, Shapiro, L.
登録日2016-04-02
公開日2016-06-22
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.29 Å)
主引用文献Structural basis of adhesive binding by desmocollins and desmogleins.
Proc.Natl.Acad.Sci.USA, 113, 2016
8JKE
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AfsR(T337A) transcription activation complex
分子名称: DNA(65-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ...
著者Wang, Y, Zheng, J.
登録日2023-06-01
公開日2024-02-14
最終更新日2024-04-03
実験手法ELECTRON MICROSCOPY (3.67 Å)
主引用文献Structural and functional characterization of AfsR, an SARP family transcriptional activator of antibiotic biosynthesis in Streptomyces.
Plos Biol., 22, 2024
3J7X
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Capsid Expansion Mechanism Of Bacteriophage T7 Revealed By Multi-State Atomic Models Derived From Cryo-EM Reconstructions
分子名称: Major capsid protein 10A
著者Guo, F, Liu, Z, Fang, P.A, Zhang, Q, Wright, E.T, Wu, W, Zhang, C, Vago, F, Ren, Y, Jakata, J, Chiu, W, Serwer, P, Jiang, W.
登録日2014-08-12
公開日2014-10-15
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Capsid expansion mechanism of bacteriophage T7 revealed by multistate atomic models derived from cryo-EM reconstructions.
Proc.Natl.Acad.Sci.USA, 111, 2014
7L5M
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Crystal Structure of the DiB-RM-split Protein
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Lipocalin family protein, SODIUM ION, ...
著者Bozhanova, N.G, Harp, J.M, Meiler, J.
登録日2020-12-22
公開日2021-10-27
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.33 Å)
主引用文献Computational redesign of a fluorogen activating protein with Rosetta.
Plos Comput.Biol., 17, 2021
5CNN
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BU of 5cnn by Molmil
Crystal structure of the EGFR kinase domain mutant I682Q
分子名称: Epidermal growth factor receptor, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
著者Kovacs, E, Das, R, Mirza, A, Jura, N, Barros, T, Kuriyan, J.
登録日2015-07-17
公開日2015-07-29
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Analysis of the Role of the C-Terminal Tail in the Regulation of the Epidermal Growth Factor Receptor.
Mol.Cell.Biol., 35, 2015
7L5L
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Crystal structure of the DiB-RM protein
分子名称: Lipocalin family protein, SULFATE ION
著者Bozhanova, N.G, Harp, J.M, Meiler, J.
登録日2020-12-22
公開日2021-10-27
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.01 Å)
主引用文献Computational redesign of a fluorogen activating protein with Rosetta.
Plos Comput.Biol., 17, 2021
8JMA
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The cryo-EM structure of insect gustatory receptor Gr43a from Drosophila melanogaster in complex with fructose
分子名称: Gustatory receptor for sugar taste 43a, beta-D-fructofuranose
著者Ma, D, Guo, J.
登録日2023-06-04
公開日2024-02-07
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (2.5 Å)
主引用文献Structural basis for sugar perception by Drosophila gustatory receptors.
Science, 383, 2024
5OOI
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STRUCTURE OF PROTEIN KINASE CK2 CATALYTIC SUBUNIT (ISOFORM CK2ALPHA') IN COMPLEX WITH THE INDENOINDOLE-TYPE INHIBITOR 4P
分子名称: 1,2-ETHANEDIOL, 4-(3-methylbut-2-enoxy)-5-propan-2-yl-7,8-dihydro-6~{H}-indeno[1,2-b]indole-9,10-dione, ACETATE ION, ...
著者Hochscherf, J, Lindenblatt, D, Witulski, B, Birus, R, Aichele, D, Marminon, C, Bouaziz, Z, Le Borgne, M, Jose, J, Niefind, K.
登録日2017-08-07
公開日2017-12-27
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.998 Å)
主引用文献Unexpected Binding Mode of a Potent Indeno[1,2-b]indole-Type Inhibitor of Protein Kinase CK2 Revealed by Complex Structures with the Catalytic Subunit CK2 alpha and Its Paralog CK2 alpha '.
Pharmaceuticals (Basel), 10, 2017
8JME
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The cryo-EM structure of insect gustatory receptor Gr64a from Drosophila melanogaster
分子名称: Gustatory receptor for sugar taste 64a
著者Ma, D, Guo, J.
登録日2023-06-04
公開日2024-02-07
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (2.5 Å)
主引用文献Structural basis for sugar perception by Drosophila gustatory receptors.
Science, 383, 2024
8JMH
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The cryo-EM structure of insect gustatory receptor Gr64a from Drosophila melanogaster in complex with sucrose
分子名称: Gustatory receptor for sugar taste 64a, beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose
著者Ma, D, Guo, J.
登録日2023-06-04
公開日2024-02-07
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (2.5 Å)
主引用文献Structural basis for sugar perception by Drosophila gustatory receptors.
Science, 383, 2024
8A5S
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Crystal structure of light-activated DNA-binding protein EL222 from Erythrobacter litoralis crystallized in dark, measured illuminated.
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, FLAVIN MONONUCLEOTIDE, ...
著者Koval, T, Chaudhari, A, Fuertes, G, Andersson, I, Dohnalek, J.
登録日2022-06-15
公開日2023-07-05
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献EL222 from Erythrobacter litoralis.
To Be Published
8J1I
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Crystal Structure of EphA8/SASH1 Complex
分子名称: Ephrin type-A receptor 8, SAM and SH3 domain-containing protein 1
著者Liu, W, Li, J, Ding, Y.
登録日2023-04-12
公開日2024-02-28
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure of EphA8 and SASH1 complex at 1.60 Angstroms resolution
To Be Published
7L5K
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Crystal structure of the DiB-RM protein
分子名称: DODECYL-BETA-D-MALTOSIDE, ISOPROPYL ALCOHOL, Lipocalin family protein, ...
著者Bozhanova, N.G, Harp, J.M, Meiler, J.
登録日2020-12-22
公開日2021-10-27
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Computational redesign of a fluorogen activating protein with Rosetta.
Plos Comput.Biol., 17, 2021
2YMB
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BU of 2ymb by Molmil
Structures of MITD1
分子名称: CHARGED MULTIVESICULAR BODY PROTEIN 1A, MIT DOMAIN-CONTAINING PROTEIN 1
著者Hadders, M.A, Agromayor, M, Obita, T, Perisic, O, Caballe, A, Kloc, M, Lamers, M.H, Williams, R.L, Martin-Serrano, J.
登録日2012-10-08
公開日2012-10-24
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (3.404 Å)
主引用文献Escrt-III Binding Protein Mitd1 is Involved in Cytokinesis and Has an Unanticipated Pld Fold that Binds Membranes.
Proc.Natl.Acad.Sci.USA, 109, 2012
8A33
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Crystal structure of PpSB1-LOV-K117E mutant (light state)
分子名称: Flavin mononucleotide (semi-quinone intermediate), Sensory box protein
著者Batra-Safferling, R, Granzin, J, Krauss, U.
登録日2022-06-07
公開日2023-07-05
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Crystal structure of PpSB1-LOV-K117E mutant (light state)
To Be Published
4QRT
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Crystal Structure of HLA B*0801 in complex with ELN_YYM, ELNRKMIYM
分子名称: 1,2-ETHANEDIOL, Beta-2-microglobulin, HLA class I histocompatibility antigen, ...
著者Gras, S, Twist, K.-A, Rossjohn, J.
登録日2014-07-02
公開日2014-07-16
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Molecular imprint of exposure to naturally occurring genetic variants of human cytomegalovirus on the T cell repertoire.
Sci Rep, 4, 2014

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件を2024-08-14に公開中

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