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PDB: 45 results

4O1S
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BU of 4o1s by Molmil
Crystal structure of TvoVMA intein
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, SULFATE ION, ...
Authors:Aranko, A.S, Oeemig, J.S, Zhou, D, Kajander, T, Wlodawer, A, Iwai, H.
Deposit date:2013-12-16
Release date:2014-03-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.7008 Å)
Cite:Structure-based engineering and comparison of novel split inteins for protein ligation.
Mol Biosyst, 10, 2014
5N2N
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BU of 5n2n by Molmil
Crystal structure of the receiver domain of the histidine kinase CKI1 from Arabidopsis thaliana complexed with Mg2+ and BeF3-
Descriptor: BERYLLIUM TRIFLUORIDE ION, Histidine kinase CKI1, MAGNESIUM ION
Authors:Otrusinova, O, Demo, G, Padrta, P, Jasenakova, Z, Pekarova, B, Gelova, Z, Szmitkowska, A, Kaderavek, P, Jansen, S, Zachrdla, M, Klumpler, T, Marek, J, Hritz, J, Janda, L, Iwai, H, Wimmerova, M, Hejatko, J, Zidek, L.
Deposit date:2017-02-08
Release date:2017-09-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Conformational dynamics are a key factor in signaling mediated by the receiver domain of a sensor histidine kinase from Arabidopsis thaliana.
J. Biol. Chem., 292, 2017
5O9I
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BU of 5o9i by Molmil
Crystal structure of transcription factor IIB Mvu mini-intein
Descriptor: Transcription initiation factor IIB,Transcription initiation factor IIB
Authors:Mikula, K.M, Iwai, H, Li, M, Wlodawer, A.
Deposit date:2017-06-19
Release date:2017-11-01
Last modified:2022-03-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Basis for the Persistence of Homing Endonucleases in Transcription Factor IIB Inteins.
J. Mol. Biol., 429, 2017
4E2T
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BU of 4e2t by Molmil
Crystal Structures of RadA intein from Pyrococcus horikoshii
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, Pho radA intein
Authors:Oeemig, J.S, Zhou, D, Kajander, T, Wlodawer, A, Iwai, H.
Deposit date:2012-03-09
Release date:2012-05-16
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:NMR and Crystal Structures of the Pyrococcus horikoshii RadA Intein Guide a Strategy for Engineering a Highly Efficient and Promiscuous Intein.
J.Mol.Biol., 421, 2012
4O1R
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BU of 4o1r by Molmil
Crystal structure of NpuDnaB intein
Descriptor: CHLORIDE ION, GLYCEROL, Replicative DNA helicase, ...
Authors:Aranko, A.S, Oeemig, J.S, Zhou, D, Kajander, T, Wlodawer, A, Iwai, H.
Deposit date:2013-12-16
Release date:2014-03-19
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure-based engineering and comparison of novel split inteins for protein ligation.
Mol Biosyst, 10, 2014
4ORN
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BU of 4orn by Molmil
Blue Fluorescent Protein mKalama1
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, SULFATE ION, ...
Authors:Vegh, R.B, Bloch, D.A, Bommarius, A.S, Verkhovsky, M, Pletnev, S, Iwai, H, Bochenkova, A.V, Solntsev, K.M.
Deposit date:2014-02-11
Release date:2015-02-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Hidden photoinduced reactivity of the blue fluorescent protein mKalama1.
Phys Chem Chem Phys, 17, 2015
1OAV
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BU of 1oav by Molmil
OMEGA-AGATOXIN IVA
Descriptor: OMEGA-AGATOXIN IVA
Authors:Kim, J.I, Konishi, S, Iwai, H, Kohno, T, Gouda, H, Shimada, I, Sato, K, Arata, Y.
Deposit date:1995-06-28
Release date:1995-10-15
Last modified:2017-11-29
Method:SOLUTION NMR
Cite:Three-dimensional solution structure of the calcium channel antagonist omega-agatoxin IVA: consensus molecular folding of calcium channel blockers.
J.Mol.Biol., 250, 1995
6RIZ
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BU of 6riz by Molmil
Crystal structure of gp41-1 intein (C1A, F65W, D107C)
Descriptor: gp41-1 intein
Authors:Beyer, H.M, Lountos, G.T, Mikula, M.K, Wlodawer, A, Iwai, H.
Deposit date:2019-04-25
Release date:2020-04-29
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The Convergence of the Hedgehog/Intein Fold in Different Protein Splicing Mechanisms.
Int J Mol Sci, 21, 2020
6QAZ
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BU of 6qaz by Molmil
Crystal structure of gp41-1 intein
Descriptor: CITRATE ANION, DI(HYDROXYETHYL)ETHER, PENTAETHYLENE GLYCOL, ...
Authors:Mikula, K.M, Beyer, H.M, Li, M, Wlodawer, A, Iwai, H.
Deposit date:2018-12-20
Release date:2019-11-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.02 Å)
Cite:The crystal structure of the naturally split gp41-1 intein guides the engineering of orthogonal split inteins from cis-splicing inteins.
Febs J., 287, 2020
4E2U
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BU of 4e2u by Molmil
Crystal Structures of RadAmin intein from Pyrococcus horikoshii
Descriptor: Pho radA intein
Authors:Oeemig, J.S, Zhou, D, Kajander, T, Wlodawer, A, Iwai, H.
Deposit date:2012-03-09
Release date:2012-05-16
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.582 Å)
Cite:NMR and Crystal Structures of the Pyrococcus horikoshii RadA Intein Guide a Strategy for Engineering a Highly Efficient and Promiscuous Intein.
J.Mol.Biol., 421, 2012
2M4F
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BU of 2m4f by Molmil
Solution Structure of Outer surface protein E
Descriptor: Outer surface protein E
Authors:Bhattacharjee, A, Oeemig, J.S, Kolodziejczyk, R, Meri, T, Kajander, T, Iwai, H, Jokiranta, T, Goldman, A.
Deposit date:2013-02-05
Release date:2013-05-15
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural Basis for Complement Evasion by Lyme Disease Pathogen Borrelia burgdorferi
J.Biol.Chem., 288, 2013
4KL6
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BU of 4kl6 by Molmil
Crystal structure of dimeric form of NpuDnaE intein
Descriptor: DNA-directed DNA polymerase,Nucleic acid binding, OB-fold, tRNA/helicase-type
Authors:Aranko, A.S, Oeemig, J.S, Kajander, T, Iwai, H.
Deposit date:2013-05-07
Release date:2013-09-04
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Intermolecular domain swapping induces intein-mediated protein alternative splicing.
Nat.Chem.Biol., 9, 2013
6QKV
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BU of 6qkv by Molmil
Structure of YibK from P. aeruginosa
Descriptor: GLYCEROL, SULFATE ION, tRNA (cytidine(34)-2'-O)-methyltransferase
Authors:Mikula, K.M, Tascon, I, Iwai, H.
Deposit date:2019-01-30
Release date:2020-02-19
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Tying up the Loose Ends: A Mathematically Knotted Protein.
Front Chem, 9, 2021
6QH8
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BU of 6qh8 by Molmil
Structure of knotted YibK from P. aeruginosa
Descriptor: DI(HYDROXYETHYL)ETHER, SULFATE ION, tRNA (cytidine(34)-2'-O)-methyltransferase
Authors:Mikula, K.M, Tascon, I, Iwai, H.
Deposit date:2019-01-16
Release date:2020-07-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Tying up the Loose Ends: A Mathematically Knotted Protein.
Front Chem, 9, 2021
2KEQ
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BU of 2keq by Molmil
Solution structure of DnaE intein from Nostoc punctiforme
Descriptor: DNA polymerase III alpha subunit, Nucleic acid binding OB-fold tRNA/helicase-type
Authors:Oeemig, J.S, Aranko, A.S, Djupsj, J.B, Iwai, H.
Deposit date:2009-02-02
Release date:2009-05-19
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of DnaE intein from Nostoc punctiforme: structural basis for the design of a new split intein suitable for site-specific chemical modification.
Febs Lett., 583, 2009
2LQM
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BU of 2lqm by Molmil
Solution Structures of RadA intein from Pyrococcus horikoshii
Descriptor: Pho radA intein
Authors:Oeemig, J.S, Zhou, D, Kajander, T, Wlodawer, A, Iwai, H.
Deposit date:2012-03-09
Release date:2012-05-16
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:NMR and Crystal Structures of the Pyrococcus horikoshii RadA Intein Guide a Strategy for Engineering a Highly Efficient and Promiscuous Intein.
J.Mol.Biol., 421, 2012
2LWY
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BU of 2lwy by Molmil
Solution Structure of Bacterial Intein-Like domain from Clostridium thermocellum
Descriptor: BACTERIAL INTEIN-LIKE DOMAIN
Authors:Aranko, A.S, Oeemig, J.S, Iwai, H.
Deposit date:2012-08-09
Release date:2013-05-08
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural basis for protein trans-splicing by a bacterial intein-like domain - protein ligation without nucleophilic side chains.
Febs J., 280, 2013
4KL5
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BU of 4kl5 by Molmil
Crystal structure of NpuDnaE intein
Descriptor: CITRIC ACID, DNA polymerase III, alpha subunit, ...
Authors:Aranko, A.S, Oeemig, J.S, Kajander, T, Iwai, H.
Deposit date:2013-05-07
Release date:2013-09-04
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Intermolecular domain swapping induces intein-mediated protein alternative splicing.
Nat.Chem.Biol., 9, 2013
4AAJ
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BU of 4aaj by Molmil
Structure of N-(5'-phosphoribosyl)anthranilate isomerase from Pyrococcus furiosus
Descriptor: N-(5'-PHOSPHORIBOSYL)ANTHRANILATE ISOMERASE, SULFATE ION
Authors:Repo, H, Oeemig, J.S, Djupsjobacka, J.B, Iwai, H, Heikinheimo, P.
Deposit date:2011-12-04
Release date:2012-10-31
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:A Monomeric Tim-Barrel Structure from Pyrococcus Furiosus is Optimized for Extreme Temperatures
Acta Crystallogr.,Sect.D, 68, 2012
1L4V
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BU of 1l4v by Molmil
SOLUTION STRUCTURE OF SAPECIN
Descriptor: Sapecin
Authors:Hanzawa, H, Iwai, H, Takeuchi, K, Kuzuhara, T, Komano, H, Kohda, D, Inagaki, F, Natori, S, Arata, Y, Shimada, I.
Deposit date:2002-03-06
Release date:2002-03-27
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:1H nuclear magnetic resonance study of the solution conformation of an antibacterial protein, sapecin.
FEBS Lett., 269, 1990
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