4U4T
| Structure of a nitrate/nitrite antiporter NarK in nitrate-bound inward-open state | 分子名称: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, NITRATE ION, Nitrate/nitrite transporter NarK, ... | 著者 | Fukuda, M, Takeda, H, Kato, H.E, Doki, S, Ito, K, Maturana, A.D, Ishitani, R, Nureki, O. | 登録日 | 2014-07-24 | 公開日 | 2015-07-15 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Structural basis for dynamic mechanism of nitrate/nitrite antiport by NarK Nat Commun, 6, 2015
|
|
7CSL
| Crystal structure of the archaeal EF1A-EF1B complex | 分子名称: | Elongation factor 1-alpha, Elongation factor 1-beta | 著者 | Suzuki, T, Ito, K, Miyoshi, T, Murakami, R, Uchiumi, T. | 登録日 | 2020-08-15 | 公開日 | 2021-06-23 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Structural insights into the Switching Off of the Interaction between the Archaeal Ribosomal Stalk and aEF1A by Nucleotide Exchange Factor aEF1B. J.Mol.Biol., 433, 2021
|
|
1BK1
| ENDO-1,4-BETA-XYLANASE C | 分子名称: | ENDO-1,4-B-XYLANASE C | 著者 | Fushinobu, S, Ito, K, Konno, M, Wakagi, T, Matsuzawa, H. | 登録日 | 1998-07-14 | 公開日 | 1999-01-13 | 最終更新日 | 2023-08-02 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Crystallographic and mutational analyses of an extremely acidophilic and acid-stable xylanase: biased distribution of acidic residues and importance of Asp37 for catalysis at low pH. Protein Eng., 11, 1998
|
|
1AUG
| CRYSTAL STRUCTURE OF THE PYROGLUTAMYL PEPTIDASE I FROM BACILLUS AMYLOLIQUEFACIENS | 分子名称: | PYROGLUTAMYL PEPTIDASE-1 | 著者 | Odagaki, Y, Hayashi, A, Okada, K, Hirotsu, K, Kabashima, T, Ito, K, Yoshimoto, T, Tsuru, D, Sato, M, Clardy, J. | 登録日 | 1997-08-26 | 公開日 | 1999-03-23 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | The crystal structure of pyroglutamyl peptidase I from Bacillus amyloliquefaciens reveals a new structure for a cysteine protease. Structure Fold.Des., 7, 1999
|
|
1X3U
| Solution structure of the C-terminal transcriptional activator domain of FixJ from Sinorhizobium melilot | 分子名称: | Transcriptional regulatory protein fixJ | 著者 | Kurashima-Ito, K, Kasai, Y, Hosono, K, Tamura, K, Oue, S, Isogai, M, Ito, Y, Nakamura, H, Shiro, Y. | 登録日 | 2005-05-10 | 公開日 | 2006-05-02 | 最終更新日 | 2024-05-29 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structure of the C-terminal transcriptional activator domain of FixJ from Sinorhizobium meliloti and its recognition of the fixK promoter Biochemistry, 44, 2005
|
|
8JX3
| alpha-Hemolysin(G122S/K147R/K237C)-SpyTag/SpyCatcher head to head 14-mer | 分子名称: | alpha hemolysin fused with spy-catcher, alpha hemolysin fused with spy-tag | 著者 | Ishii, Y, Naito, K, Yokoyama, T, Tanaka, Y, Matsuura, T. | 登録日 | 2023-06-30 | 公開日 | 2024-07-03 | 実験手法 | ELECTRON MICROSCOPY (2.2 Å) | 主引用文献 | alpha-Hemolysin(G122S/K147R)-SpyTag/SpyCatcher head to head 14-mer To Be Published
|
|
8JX2
| alpha-Hemolysin(G122S/K147R)-SpyTag/SpyCatcher head to head 14-mer | 分子名称: | alpha hemolysin fused with spy-catcher, alpha hemolysin fused with spy-tag | 著者 | Ishii, Y, Naito, K, Yokoyama, T, Tanaka, Y, Matsuura, T. | 登録日 | 2023-06-30 | 公開日 | 2024-07-03 | 実験手法 | ELECTRON MICROSCOPY (2.2 Å) | 主引用文献 | alpha-Hemolysin(G122S/K147R)-SpyTag/SpyCatcher head to head 14-mer To Be Published
|
|
5B3S
| Bovine heart cytochrome c oxidase in the carbon monoxide-bound mixed-valence state at 1.68 angstrom resolution (50 K) | 分子名称: | (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ... | 著者 | Shimada, A, Shinzawa-Ito, K, Yoshikawa, S, Tsukihara, T. | 登録日 | 2016-03-11 | 公開日 | 2017-03-22 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.68 Å) | 主引用文献 | Bovine heart cytochrome c oxidase in the carbon monoxide-bound mixed-valence state at 1.68 angstrom resolution (50 K) To Be Published
|
|
6LCQ
| Crystal structure of rice defensin OsAFP1 | 分子名称: | Defensin-like protein CAL1, PHOSPHATE ION | 著者 | Ochiai, A, Ogawa, K, Fukuda, M, Suzuki, M, Ito, K, Tanaka, T, Sagehashi, Y, Taniguchi, M. | 登録日 | 2019-11-19 | 公開日 | 2020-04-01 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.62 Å) | 主引用文献 | Crystal structure of rice defensin OsAFP1 and molecular insight into lipid-binding. J.Biosci.Bioeng., 130, 2020
|
|
3J9W
| Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex | 分子名称: | 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein bS16, ... | 著者 | Sohmen, D, Chiba, S, Shimokawa-Chiba, N, Innis, C.A, Berninghausen, O, Beckmann, R, Ito, K, Wilson, D.N. | 登録日 | 2015-03-16 | 公開日 | 2015-04-29 | 最終更新日 | 2024-02-21 | 実験手法 | ELECTRON MICROSCOPY (3.9 Å) | 主引用文献 | Structure of the Bacillus subtilis 70S ribosome reveals the basis for species-specific stalling. Nat Commun, 6, 2015
|
|
1ZOV
| Crystal Structure of Monomeric Sarcosine Oxidase from Bacillus sp. NS-129 | 分子名称: | CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, Monomeric sarcosine oxidase | 著者 | Nagata, K, Sasaki, H, Ohtsuka, J, Hua, M, Okai, M, Kubota, K, Kamo, M, Ito, K, Ichikawa, T, Koyama, Y, Tanokura, M. | 登録日 | 2005-05-14 | 公開日 | 2006-05-23 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (1.86 Å) | 主引用文献 | Crystal structure of monomeric sarcosine oxidase from Bacillus sp. NS-129 reveals multiple conformations at the active-site loop PROC.JPN.ACAD.,SER.B, 81, 2005
|
|
2HI7
| Crystal structure of DsbA-DsbB-ubiquinone complex | 分子名称: | Disulfide bond formation protein B, Thiol:disulfide interchange protein dsbA, UBIQUINONE-1, ... | 著者 | Inaba, K, Murakami, S, Suzuki, M, Nakagawa, A, Yamashita, E, Okada, K, Ito, K. | 登録日 | 2006-06-29 | 公開日 | 2006-12-05 | 最終更新日 | 2021-11-10 | 実験手法 | X-RAY DIFFRACTION (3.7 Å) | 主引用文献 | Crystal Structure of the DsbB-DsbA Complex Reveals a Mechanism of Disulfide Bond Generation Cell(Cambridge,Mass.), 127, 2006
|
|
1X2E
| The crystal structure of prolyl aminopeptidase complexed with Ala-TBODA | 分子名称: | (2S)-2-AMINO-1-(5-TERT-BUTYL-1,3,4-OXADIAZOL-2-YL)PROPAN-1-ONE, Proline iminopeptidase | 著者 | Nakajima, Y, Ito, K, Sakata, M, Xu, Y, Matsubara, F, Hatakeyama, S, Yoshimoto, T. | 登録日 | 2005-04-22 | 公開日 | 2006-05-09 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Unusual extra space at the active site and high activity for acetylated hydroxyproline of prolyl aminopeptidase from Serratia marcescens J.Bacteriol., 188, 2006
|
|
1X2B
| The crystal structure of prolyl aminopeptidase complexed with Sar-TBODA | 分子名称: | 1-(5-TERT-BUTYL-1,3,4-OXADIAZOL-2-YL)-2-(METHYLAMINO)ETHANONE, Proline iminopeptidase | 著者 | Nakajima, Y, Ito, K, Sakata, M, Xu, Y, Matsubara, F, Hatakeyama, S, Yoshimoto, T. | 登録日 | 2005-04-22 | 公開日 | 2006-05-09 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Unusual extra space at the active site and high activity for acetylated hydroxyproline of prolyl aminopeptidase from Serratia marcescens J.Bacteriol., 188, 2006
|
|
5AWH
| Rhodobacter sphaeroides Argonaute in complex with guide RNA/target DNA heteroduplex | 分子名称: | DNA (5'-D(*CP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*A)-3'), MAGNESIUM ION, RNA (5'-D(P*UP*UP*AP*CP*AP*AP*CP*CP*UP*AP*CP*UP*AP*CP*CP*UP*CP*G)-3'), ... | 著者 | Miyoshi, T, Ito, K, Murakami, R, Uchiumi, T. | 登録日 | 2015-07-03 | 公開日 | 2016-07-06 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Structural basis for the recognition of guide RNA and target DNA heteroduplex by Argonaute. Nat Commun, 7, 2016
|
|
1WM1
| Crystal Structure of Prolyl Aminopeptidase, Complex with Pro-TBODA | 分子名称: | (5-TERT-BUTYL-1,3,4-OXADIAZOL-2-YL)[(2R)-PYRROLIDIN-2-YL]METHANONE, Proline iminopeptidase | 著者 | Nakajima, Y, Inoue, T, Ito, K, Tozaka, T, Hatakeyama, S, Tanaka, N, Nakamura, K.T, Yoshimoto, T. | 登録日 | 2004-07-01 | 公開日 | 2004-07-20 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | Novel inhibitor for prolyl aminopeptidase from Serratia marcescens and studies on the mechanism of substrate recognition of the enzyme using the inhibitor ARCH.BIOCHEM.BIOPHYS., 416, 2003
|
|
7COY
| Structure of the far-red light utilizing photosystem I of Acaryochloris marina | 分子名称: | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, CHLOROPHYLL D, ... | 著者 | Kawakami, K, Yonekura, K, Hamaguchi, T, Kashino, Y, Shinzawa-Itoh, K, Inoue-Kashino, N, Itoh, S, Ifuku, K, Yamashita, E. | 登録日 | 2020-08-05 | 公開日 | 2021-03-31 | 最終更新日 | 2021-05-05 | 実験手法 | ELECTRON MICROSCOPY (2.5 Å) | 主引用文献 | Structure of the far-red light utilizing photosystem I of Acaryochloris marina. Nat Commun, 12, 2021
|
|
2IPC
| Crystal structure of the translocation ATPase SecA from Thermus thermophilus reveals a parallel, head-to-head dimer | 分子名称: | Preprotein translocase SecA subunit | 著者 | Vassylyev, D.G, Mori, H, Vassylyeva, M.N, Tsukazaki, T, Kimura, Y, Tahirov, T.H, Ito, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | 登録日 | 2006-10-12 | 公開日 | 2006-11-28 | 最終更新日 | 2024-02-21 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | Crystal Structure of the Translocation ATPase SecA from Thermus thermophilus Reveals a Parallel, Head-to-Head Dimer. J.Mol.Biol., 364, 2006
|
|
3UMV
| Eukaryotic Class II CPD photolyase structure reveals a basis for improved UV-tolerance in plants | 分子名称: | 1,2-ETHANEDIOL, Deoxyribodipyrimidine photo-lyase, FLAVIN-ADENINE DINUCLEOTIDE, ... | 著者 | Arvai, A.S, Hitomi, K, Getzoff, E.D, Tainer, J.A. | 登録日 | 2011-11-14 | 公開日 | 2011-12-21 | 最終更新日 | 2023-09-13 | 実験手法 | X-RAY DIFFRACTION (1.705 Å) | 主引用文献 | Eukaryotic Class II Cyclobutane Pyrimidine Dimer Photolyase Structure Reveals Basis for Improved Ultraviolet Tolerance in Plants. J.Biol.Chem., 287, 2012
|
|
1MBQ
| Anionic Trypsin from Pacific Chum Salmon | 分子名称: | BENZAMIDINE, CALCIUM ION, Trypsin | 著者 | Toyota, E, Ng, K.K.S, Kuninaga, S, Sekizaki, H, Itoh, K, Tanizawa, K, James, M.N.G. | 登録日 | 2002-08-03 | 公開日 | 2002-12-11 | 最終更新日 | 2011-07-13 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Crystal Structure and Nucleotide Sequence of an Anionic Trypsin from Chum Salmon (Oncorhynchus keta) in Comparison with Atlantic Salmon (Salmo salar) and Bovine Trypsin J.Mol.Biol., 324, 2002
|
|
5YT0
| Crystal structure of the complex of archaeal ribosomal stalk protein aP1 and archaeal translation initiation factor aIF5B | 分子名称: | Archaeal ribosomal stalk protein aP1, GUANOSINE-5'-DIPHOSPHATE, Probable translation initiation factor IF-2 | 著者 | Murakami, R, Singh, C.R, Morris, J, Tang, L, Harmon, I, Miyoshi, T, Ito, K, Asano, K, Uchiumi, T. | 登録日 | 2017-11-16 | 公開日 | 2018-06-27 | 最終更新日 | 2024-03-27 | 実験手法 | X-RAY DIFFRACTION (1.89 Å) | 主引用文献 | The Interaction between the Ribosomal Stalk Proteins and Translation Initiation Factor 5B Promotes Translation Initiation Mol. Cell. Biol., 38, 2018
|
|
5YV5
| Crystal structure of the complex of archaeal ribosomal stalk protein aP1 and archaeal ribosome recycling factor aABCE1. | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, ATPase RIL, Archaeal ribosomal stalk protein aP1, ... | 著者 | Imai, H, Abe, T, Miyoshi, T, Nishikawa, S, Ito, K, Uchiumi, T. | 登録日 | 2017-11-24 | 公開日 | 2018-07-18 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | The ribosomal stalk protein is crucial for the action of the conserved ATPase ABCE1 Nucleic Acids Res., 46, 2018
|
|
7COH
| Dimeric Form of Bovine Heart Cytochrome c Oxidase in the Fully Oxidized State | 分子名称: | (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, 1,2-ETHANEDIOL, ... | 著者 | Shinzawa-Itoh, K, Muramoto, K. | 登録日 | 2020-08-04 | 公開日 | 2021-04-07 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.3 Å) | 主引用文献 | The 1.3-A Resolution structure of bovine cytochrome c oxidase suggests a dimerization mechanism Biochim.Biophys.Acta, 2021
|
|
6JI2
| Crystal structure of archaeal ribosomal protein aP1, aPelota, and GTP-bound aEF1A complex | 分子名称: | Archaeal ribosomal stalk protein aP1, Elongation factor 1-alpha, GUANOSINE-5'-TRIPHOSPHATE, ... | 著者 | Maruyama, K, Imai, H, Kawamura, M, Ishino, S, Ishino, Y, Ito, K, Uchiumi, T. | 登録日 | 2019-02-20 | 公開日 | 2019-11-13 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Switch of the interactions between the ribosomal stalk and EF1A in the GTP- and GDP-bound conformations. Sci Rep, 9, 2019
|
|
1UGP
| Crystal structure of Co-type nitrile hydratase complexed with n-butyric acid | 分子名称: | COBALT (II) ION, Cobalt-containing nitrile hydratase subunit alpha, Cobalt-containing nitrile hydratase subunit beta, ... | 著者 | Miyanaga, A, Fushinobu, S, Ito, K, Shoun, H, Wakagi, T. | 登録日 | 2003-06-17 | 公開日 | 2004-06-17 | 最終更新日 | 2022-12-21 | 実験手法 | X-RAY DIFFRACTION (1.63 Å) | 主引用文献 | Mutational and structural analysis of cobalt-containing nitrile hydratase on substrate and metal binding Eur.J.Biochem., 271, 2004
|
|