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PDB: 412 件
5Y0N
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BU of 5y0n by Molmil
Crystal structure of Bacillus subtilis TmcAL bound with ATP (SeMet derivative)
分子名称: ADENOSINE-5'-TRIPHOSPHATE, UPF0348 protein B4417_3650
著者Yamashita, S, Tomita, K.
登録日2017-07-18
公開日2018-07-18
最終更新日2018-12-26
実験手法X-RAY DIFFRACTION (2.302 Å)
主引用文献Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
5Y0R
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BU of 5y0r by Molmil
Crystal structure of Thermotoga maritima TmcAL (apo, form I)
分子名称: TmTmcAL(SeMet)
著者Yamashita, S, Tomita, K.
登録日2017-07-18
公開日2018-07-18
最終更新日2018-12-26
実験手法X-RAY DIFFRACTION (3.11 Å)
主引用文献Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
4WC4
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BU of 4wc4 by Molmil
tRNA-processing enzyme complex 2
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Poly A polymerase, RNA (74-MER)
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3.501 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC6
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BU of 4wc6 by Molmil
Structure of tRNA-processing enzyme complex 4
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Poly A polymerase, RNA (75-mer)
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.41 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
5Y0P
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BU of 5y0p by Molmil
Crystal structure of Bacillus subtilis TmcAL bound with alpha-thio ATP
分子名称: ADENOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE, UPF0348 protein B4417_3650
著者Yamashita, S, Tomita, K.
登録日2017-07-18
公開日2018-07-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
4WC3
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BU of 4wc3 by Molmil
Structure of tRNA-processing enzyme complex 1
分子名称: Poly A polymerase, RNA 76-mer
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
5Y0Q
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BU of 5y0q by Molmil
Crystal structure of BsTmcAL bound with AMPCPP
分子名称: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, UPF0348 protein B4417_3650
著者Yamashita, S, Tomita, K.
登録日2017-07-18
公開日2018-07-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
5Y0O
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BU of 5y0o by Molmil
Crystal structure of apo BsTmcAL
分子名称: UPF0348 protein B4417_3650
著者Yamashita, S, Tomita, K.
登録日2017-07-18
公開日2018-07-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
5Y0T
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BU of 5y0t by Molmil
Crystal structure of Thermotoga maritima TmcAL bound with alpha-thio ATP(Form II)
分子名称: 1,2-ETHANEDIOL, ADENOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE, PENTAETHYLENE GLYCOL, ...
著者Yamashita, S, Tomita, K.
登録日2017-07-18
公開日2018-07-18
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
5Y0S
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BU of 5y0s by Molmil
Crystal structure of apo Thermotoga maritima TmcAL(Form II)
分子名称: 1,2-ETHANEDIOL, Thermotoga maritima TmcAL
著者Yamashita, S, Tomita, K.
登録日2017-07-18
公開日2018-07-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.103 Å)
主引用文献Acetate-dependent tRNA acetylation required for decoding fidelity in protein synthesis.
Nat. Chem. Biol., 14, 2018
5WU2
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BU of 5wu2 by Molmil
Crystal structure of human Tut1 bound with BaUTP, form I
分子名称: BARIUM ION, CHLORIDE ION, Speckle targeted PIP5K1A-regulated poly(A) polymerase, ...
著者Yamashita, S, Tomita, K.
登録日2016-12-16
公開日2017-05-31
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Crystal structures of U6 snRNA-specific terminal uridylyltransferase
Nat Commun, 8, 2017
5WU1
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BU of 5wu1 by Molmil
Crystal structure of apo human Tut1, form I
分子名称: CHLORIDE ION, Speckle targeted PIP5K1A-regulated poly(A) polymerase
著者Yamashita, S, Tomita, K.
登録日2016-12-16
公開日2017-05-31
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structures of U6 snRNA-specific terminal uridylyltransferase
Nat Commun, 8, 2017
5WU6
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BU of 5wu6 by Molmil
Crystal structure of apo human Tut1, form IV
分子名称: MAGNESIUM ION, Speckle targeted PIP5K1A-regulated poly(A) polymerase
著者Yamashita, S, Tomita, K.
登録日2016-12-16
公開日2017-05-31
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.209 Å)
主引用文献Crystal structures of U6 snRNA-specific terminal uridylyltransferase
Nat Commun, 8, 2017
5WU5
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BU of 5wu5 by Molmil
Crystal structure of apo human Tut1, form III
分子名称: Speckle targeted PIP5K1A-regulated poly(A) polymerase
著者Yamashita, S, Tomita, K.
登録日2016-12-16
公開日2017-05-31
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.404 Å)
主引用文献Crystal structures of U6 snRNA-specific terminal uridylyltransferase
Nat Commun, 8, 2017
4WC0
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BU of 4wc0 by Molmil
tRNA-processing enzyme with ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Poly A polymerase
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC2
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BU of 4wc2 by Molmil
Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog
分子名称: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, MAGNESIUM ION, Poly A polymerase, ...
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC1
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BU of 4wc1 by Molmil
Structure of tRNA-processing enzyme with CTP
分子名称: CYTIDINE-5'-TRIPHOSPHATE, Poly A polymerase
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC7
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BU of 4wc7 by Molmil
Structure of tRNA-processing enzyme complex 5
分子名称: CYTIDINE-5'-TRIPHOSPHATE, Poly A polymerase, RNA (75-MER)
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.102 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4X0A
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BU of 4x0a by Molmil
Structure of tRNA-processing enzyme complex 6
分子名称: Poly A polymerase, RNA (73-MER)
著者Yamashita, S, Tomita, K.
登録日2014-11-21
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.505 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4X0B
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BU of 4x0b by Molmil
Structure of tRNA-processing enzyme complex 7
分子名称: Poly A polymerase, RNA (77-MER)
著者Yamashita, S, Tomita, K.
登録日2014-11-21
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
4WC5
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BU of 4wc5 by Molmil
Structure of tRNA-processing enzyme complex 3
分子名称: CYTIDINE-5'-TRIPHOSPHATE, Poly A polymerase, RNA (74-MER)
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.41 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
3VSE
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BU of 3vse by Molmil
Crystal structure of methyltransferase
分子名称: Putative uncharacterized protein, S-ADENOSYL-L-HOMOCYSTEINE
著者Kita, S, Tanaka, Y, Yao, M, Tanaka, I.
登録日2012-04-25
公開日2013-04-10
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.099 Å)
主引用文献Crystal structure of a putative methyltransferase SAV1081 from Staphylococcus aureus
Protein Pept.Lett., 20, 2012
4WBY
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BU of 4wby by Molmil
tRNA-processing enzyme (apo form I)
分子名称: GLYCEROL, Poly A polymerase, SULFATE ION
著者Yamashita, S, Tomita, K.
登録日2014-09-04
公開日2015-04-15
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme.
Structure, 23, 2015
5WU4
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BU of 5wu4 by Molmil
Crystal structure of human Tut1 bound with MgATP, form II
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ...
著者Yamashita, S, Tomita, K.
登録日2016-12-16
公開日2017-05-31
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structures of U6 snRNA-specific terminal uridylyltransferase
Nat Commun, 8, 2017
5WU3
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BU of 5wu3 by Molmil
Crystal structure of human Tut1 bound with MgUTP, form II
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, MAGNESIUM ION, ...
著者Yamashita, S, Tomita, K.
登録日2016-12-16
公開日2017-05-31
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.703 Å)
主引用文献Crystal structures of U6 snRNA-specific terminal uridylyltransferase
Nat Commun, 8, 2017

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