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PDB: 57 件
1VF9
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Solution Structure Of Human Trf2
分子名称: Telomeric repeat binding factor 2
著者Nishimura, Y, Hanaoka, S.
登録日2004-04-12
公開日2005-05-17
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Comparison between TRF2 and TRF1 of their telomeric DNA-bound structures and DNA-binding activities
Protein Sci., 14, 2005
1VFC
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Solution Structure Of The DNA Complex Of Human Trf2
分子名称: Short C-rich starnd, Short G-rich strand, Telomeric repeat binding factor 2
著者Nishimura, Y, Hanaoka, S.
登録日2004-04-12
公開日2005-05-17
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Comparison between TRF2 and TRF1 of their telomeric DNA-bound structures and DNA-binding activities
Protein Sci., 14, 2005
3D79
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Crystal structure of hypothetical protein PH0734.1 from hyperthermophilic archaea Pyrococcus horikoshii OT3
分子名称: Putative uncharacterized protein PH0734
著者Nishimura, Y, Miyazono, K, Sawano, Y, Makino, T, Nagata, K, Tanokura, M.
登録日2008-05-20
公開日2008-12-09
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Crystal structure of hypothetical protein PH0734.1 from hyperthermophilic archaea Pyrococcus horikoshii OT3.
Proteins, 73, 2008
1IWJ
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Putidaredoxin-Binding Stablilizes an Active Conformer of Cytochrome P450cam in its Reduced State; Crystal Structure of Mutant(109K) Cytochrome P450cam
分子名称: CAMPHOR, CYTOCHROME P450-CAM, PROTOPORPHYRIN IX CONTAINING FE
著者Nagano, S, Shimada, H, Tarumi, A, Hishiki, T, Kimata-Ariga, Y, Egawa, T, Park, S.-Y, Adachi, S, Shiro, Y, Ishimura, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-05-15
公開日2002-06-05
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Infrared spectroscopic and mutational studies on putidaredoxin-induced conformational changes in ferrous CO-P450cam
Biochemistry, 42, 2003
1IWK
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Putidaredoxin-Binding Stablilizes an Active Conformer of Cytochrome P450cam in its Reduced State; Crystal Structure of Mutant(112K) Cytochrome P450cam
分子名称: CYTOCHROME P450-CAM, PROTOPORPHYRIN IX CONTAINING FE
著者Nagano, S, Shimada, H, Tarumi, A, Hishiki, T, Kimata-Ariga, Y, Egawa, T, Park, S.-Y, Adachi, S, Shiro, Y, Ishimura, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-05-15
公開日2002-06-05
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Infrared spectroscopic and mutational studies on putidaredoxin-induced conformational changes in ferrous CO-P450cam
Biochemistry, 42, 2003
1GEB
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X-RAY CRYSTAL STRUCTURE AND CATALYTIC PROPERTIES OF THR252ILE MUTANT OF CYTOCHROME P450CAM
分子名称: CAMPHOR, CYTOCHROME P450-CAM, PROTOPORPHYRIN IX CONTAINING FE
著者Hishiki, T, Shimada, H, Nagano, S, Park, S.-Y, Ishimura, Y.
登録日2000-11-01
公開日2000-11-15
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献X-ray crystal structure and catalytic properties of Thr252Ile mutant of cytochrome P450cam: roles of Thr252 and water in the active center.
J.Biochem., 128, 2000
1IWI
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Putidaredoxin-Binding Stablilizes an Active Conformer of Cytochrome P450cam in its Reduced State; Crystal Structure of Cytochrome P450cam
分子名称: CAMPHOR, CYTOCHROME P450-CAM, PROTOPORPHYRIN IX CONTAINING FE
著者Nagano, S, Shimada, H, Tarumi, A, Hishiki, T, Kimata-Ariga, Y, Egawa, T, Park, S.-Y, Adachi, S, Shiro, Y, Ishimura, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-05-15
公開日2002-06-05
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Infrared spectroscopic and mutational studies on putidaredoxin-induced conformational changes in ferrous CO-P450cam
Biochemistry, 42, 2003
1V55
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Bovine heart cytochrome c oxidase at the fully reduced state
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
著者Tsukihara, T, Shimokata, K, Katayama, Y, Shimada, H, Muramoto, K, Aoyama, H, Mochizuki, M, Shinzawa-Itoh, K, Yamashita, E, Yao, M, Ishimura, Y, Yoshikawa, S.
登録日2003-11-21
公開日2003-12-23
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The low-spin heme of cytochrome c oxidase as the driving element of the proton-pumping process.
Proc.Natl.Acad.Sci.Usa, 100, 2003
1V54
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Bovine heart cytochrome c oxidase at the fully oxidized state
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
著者Tsukihara, T, Shimokata, K, Katayama, Y, Shimada, H, Muramoto, K, Aoyama, H, Mochizuki, M, Shinzawa-Itoh, K, Yamashita, E, Yao, M, Ishimura, Y, Yoshikawa, S.
登録日2003-11-21
公開日2003-12-23
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The low-spin heme of cytochrome c oxidase as the driving element of the proton-pumping process.
Proc.Natl.Acad.Sci.Usa, 100, 2003
6K5W
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Solution structure of the chromodomain of yeast Eaf3
分子名称: Chromatin modification-related protein EAF3
著者Okuda, M, Nishimura, Y.
登録日2019-05-31
公開日2020-02-26
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献The Eaf3 chromodomain acts as a pH sensor for gene expression by altering its binding affinity for histone methylated-lysine residues.
Biosci.Rep., 40, 2020
1ITY
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Solution structure of the DNA binding domain of human TRF1
分子名称: TRF1
著者Nishikawa, T, Okamura, H, Nagadoi, A, Konig, P, Rhodes, D, Nishimura, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-02-15
公開日2002-03-06
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of a telomeric DNA complex of human TRF1
Structure, 9, 2001
1J05
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The crystal structure of anti-carcinoembryonic antigen monoclonal antibody T84.66 Fv fragment
分子名称: GLYCEROL, PHOSPHATE ION, anti-CEA mAb T84.66, ...
著者Kondo, H, Nishimura, Y, Shiroishi, M, Asano, R, Noro, N, Tsumoto, K, Kumagai, I.
登録日2002-11-01
公開日2003-12-16
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献The crystal structure of anti-carcinoembryonic antigen monoclonal antibody T84.66 Fv fragment
To be Published
2RVB
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Solution structure of the complex between XPC acidic domain and TFIIH p62 PH domain
分子名称: DNA repair protein complementing XP-C cells, General transcription factor IIH subunit 1
著者Okuda, M, Nishimura, Y.
登録日2015-07-01
公開日2015-09-09
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural Insight into the Mechanism of TFIIH Recognition by the Acidic String of the Nucleotide Excision Repair Factor XPC.
Structure, 23, 2015
8I53
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Solution structure of the PH domain from the Tfb1 subunit of fission yeast TFIIH
分子名称: General transcription and DNA repair factor IIH subunit tfb1
著者Okuda, M, Nishimura, Y.
登録日2023-01-23
公開日2023-11-01
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural polymorphism of the PH domain in TFIIH.
Biosci.Rep., 43, 2023
2RUK
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Solution structure of the complex between p53 transactivation domain 2 and TFIIH p62 PH domain
分子名称: Cellular tumor antigen p53, General transcription factor IIH subunit 1
著者Okuda, M, Nishimura, Y.
登録日2014-09-24
公開日2014-10-15
最終更新日2024-10-16
実験手法SOLUTION NMR
主引用文献Extended string binding mode of the phosphorylated transactivation domain of tumor suppressor p53.
J.Am.Chem.Soc., 136, 2014
2RVN
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Solution structure of the chromodomain of HP1a with the phosphorylated N-terminal tail complexed with H3K9me3 peptide
分子名称: 18-mer peptide of Histone H3, Chromobox protein homolog 5
著者Kawaguchi, A, Nishimura, Y.
登録日2015-12-18
公開日2016-03-16
実験手法SOLUTION NMR
主引用文献Extended string-like binding of the phosphorylated HP1 alpha N-terminal tail to the lysine 9-methylated histone H3 tail
Sci Rep, 6, 2016
2RVL
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Solution structure of the chromodomain of HP1alpha with the N-terminal tail
分子名称: Chromobox protein homolog 5
著者Kawaguchi, A, Nishimura, Y.
登録日2015-12-18
公開日2016-03-16
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Extended string-like binding of the phosphorylated HP1 alpha N-terminal tail to the lysine 9-methylated histone H3 tail
Sci Rep, 6, 2016
5GOW
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Solution structure of the complex between DP1 acidic region and TFIIH p62 PH domain
分子名称: DP1, General transcription factor IIH subunit 1
著者Okuda, M, Nishimura, Y.
登録日2016-07-29
公開日2016-12-07
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献The Interaction Mode of the Acidic Region of the Cell Cycle Transcription Factor DP1 with TFIIH
J. Mol. Biol., 428, 2016
2RSO
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Solution structure of the chromodomain of Swi6
分子名称: Chromatin-associated protein swi6
著者Shimojo, H, Nishimura, Y.
登録日2012-04-18
公開日2012-08-29
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Intrinsic nucleic Acid-binding activity of chp1 chromodomain is required for heterochromatic gene silencing
Mol.Cell, 47, 2012
2RNZ
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Solution structure of the presumed chromodomain of the yeast histone acetyltransferase, Esa1
分子名称: Histone acetyltransferase ESA1
著者Shimojo, H, Sano, N, Moriwaki, Y, Okuda, M, Horikoshi, M, Nishimura, Y.
登録日2008-03-01
公開日2008-04-29
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Novel structural and functional mode of a knot essential for RNA binding activity of the Esa1 presumed chromodomain
J.Mol.Biol., 378, 2008
2RNR
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Solution structure of the complex between TFIIE alpha C-terminal acidic domain and TFIIH p62 PH domain
分子名称: TFIIH basal transcription factor complex p62 subunit, Transcription initiation factor IIE subunit alpha
著者Okuda, M, Nishimura, Y.
登録日2008-01-31
公開日2008-04-01
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structural insight into the TFIIE-TFIIH interaction: TFIIE and p53 share the binding region on TFIIH
Embo J., 27, 2008
2RVQ
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Solution structure of the isolated histone H2A-H2B heterodimer
分子名称: Histone H2A type 1-B/E, Histone H2B type 1-J
著者Moriwaki, Y, Yamane, T, Ohtomo, H, Ikeguchi, M, Kurita, J, Sato, M, Nagadoi, A, Shimojo, H, Nishimura, Y.
登録日2016-03-28
公開日2016-05-25
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structure of the isolated histone H2A-H2B heterodimer
Sci Rep, 6, 2016
2RSN
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Solution structure of the chromodomain of Chp1 in complex with H3K9me3 peptide
分子名称: Chromo domain-containing protein 1, peptide from Histone H3
著者Shimojo, H, Nishimura, Y.
登録日2012-04-18
公開日2012-08-29
実験手法SOLUTION NMR
主引用文献Intrinsic nucleic Acid-binding activity of chp1 chromodomain is required for heterochromatic gene silencing
Mol.Cell, 47, 2012
7BUL
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Solution structure of the tandem PH and BSD1 domains of TFIIH p62
分子名称: General transcription factor IIH subunit 1
著者Okuda, M, Nishimura, Y.
登録日2020-04-07
公開日2020-12-30
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural and dynamical insights into the PH domain of p62 in human TFIIH.
Nucleic Acids Res., 49, 2021
1D8K
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SOLUTION STRUCTURE OF THE CENTRAL CORE DOMAIN OF TFIIE BETA
分子名称: GENERAL TRANSCRIPTION FACTOR TFIIE-BETA
著者Okuda, M, Watanabe, Y, Okamura, H, Hanaoka, F, Ohkuma, Y, Nishimura, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日1999-10-25
公開日2000-04-26
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structure of the central core domain of TFIIEbeta with a novel double-stranded DNA-binding surface.
EMBO J., 19, 2000

 

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