8JT7
| Structure of arginine oxidase from Pseudomonas sp. TRU 7192 | 分子名称: | Amine oxidoreductase, FLAVIN-ADENINE DINUCLEOTIDE | 著者 | Yamaguchi, H, Numoto, N, Suzuki, H, Nishikawa, K, Kamegawa, A, Takahashi, K, Sugiki, M, Fujiyoshi, Y. | 登録日 | 2023-06-21 | 公開日 | 2024-06-26 | 実験手法 | ELECTRON MICROSCOPY (2.34 Å) | 主引用文献 | Structural basis of arginine oxidase from Pseudomonas sp. TRU 7192 To Be Published
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4U9I
| High Resolution Structure Of The Ni-R State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FE3-S4 CLUSTER, ... | 著者 | Ogata, H, Nishikawa, K, Lubitz, W. | 登録日 | 2014-08-06 | 公開日 | 2015-01-21 | 最終更新日 | 2023-12-20 | 実験手法 | X-RAY DIFFRACTION (1.06 Å) | 主引用文献 | Hydrogens detected by subatomic resolution protein crystallography in a [NiFe] hydrogenase. Nature, 520, 2015
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4U9H
| Ultra High Resolution Structure Of The Ni-R State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FE3-S4 CLUSTER, ... | 著者 | Ogata, H, Nishikawa, K, Lubitz, W. | 登録日 | 2014-08-06 | 公開日 | 2015-01-21 | 最終更新日 | 2023-12-20 | 実験手法 | X-RAY DIFFRACTION (0.89 Å) | 主引用文献 | Hydrogens detected by subatomic resolution protein crystallography in a [NiFe] hydrogenase. Nature, 520, 2015
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1B7R
| VERIFICATION OF SPMP USING MUTANT HUMAN LYSOZYMES | 分子名称: | PROTEIN (LYSOZYME), SODIUM ION | 著者 | Takano, K, Ota, M, Ogasahara, K, Yamagata, Y, Nishikawa, K, Yutani, K. | 登録日 | 1999-01-25 | 公開日 | 1999-02-02 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Experimental verification of the 'stability profile of mutant protein' (SPMP) data using mutant human lysozymes. Protein Eng., 12, 1999
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1B7P
| VERIFICATION OF SPMP USING MUTANT HUMAN LYSOZYMES | 分子名称: | PROTEIN (LYSOZYME), SODIUM ION | 著者 | Takano, K, Ota, M, Ogasahara, K, Yamagata, Y, Nishikawa, K, Yutani, K. | 登録日 | 1998-05-08 | 公開日 | 1999-01-25 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Experimental verification of the 'stability profile of mutant protein' (SPMP) data using mutant human lysozymes. Protein Eng., 12, 1999
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1B7S
| VERIFICATION OF SPMP USING MUTANT HUMAN LYSOZYMES | 分子名称: | LYSOZYME, SODIUM ION | 著者 | Takano, K, Ota, M, Ogasahara, K, Yamagata, Y, Nishikawa, K, Yutani, K. | 登録日 | 1999-01-25 | 公開日 | 1999-02-02 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Experimental verification of the 'stability profile of mutant protein' (SPMP) data using mutant human lysozymes. Protein Eng., 12, 1999
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1B7L
| VERIFICATION OF SPMP USING MUTANT HUMAN LYSOZYMES | 分子名称: | PROTEIN (LYSOZYME), SODIUM ION | 著者 | Takano, K, Ota, M, Ogasahara, K, Yamagata, Y, Nishikawa, K, Yutani, K. | 登録日 | 1999-01-24 | 公開日 | 1999-01-27 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Experimental verification of the 'stability profile of mutant protein' (SPMP) data using mutant human lysozymes. Protein Eng., 12, 1999
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1B7N
| VERIFICATION OF SPMP USING MUTANT HUMAN LYSOZYMES | 分子名称: | PROTEIN (LYSOZYME), SODIUM ION | 著者 | Takano, K, Ota, M, Ogasahara, K, Yamagata, Y, Nishikawa, K, Yutani, K. | 登録日 | 1999-01-24 | 公開日 | 1999-01-27 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Experimental verification of the 'stability profile of mutant protein' (SPMP) data using mutant human lysozymes. Protein Eng., 12, 1999
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1B7Q
| VERIFICATION OF SPMP USING MUTANT HUMAN LYSOZYMES | 分子名称: | PROTEIN (LYSOZYME), SODIUM ION | 著者 | Takano, K, Ota, M, Ogasahara, K, Yamagata, Y, Nishikawa, K, Yutani, K. | 登録日 | 1999-01-25 | 公開日 | 1999-02-02 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Experimental verification of the 'stability profile of mutant protein' (SPMP) data using mutant human lysozymes. Protein Eng., 12, 1999
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1B7M
| VERIFICATION OF SPMP USING MUTANT HUMAN LYSOZYMES | 分子名称: | PROTEIN (LYSOZYME), SODIUM ION | 著者 | Takano, K, Ota, M, Ogasahara, K, Yamagata, Y, Nishikawa, K, Yutani, K. | 登録日 | 1999-01-24 | 公開日 | 1999-01-27 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | Experimental verification of the 'stability profile of mutant protein' (SPMP) data using mutant human lysozymes. Protein Eng., 12, 1999
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1B7O
| VERIFICATION OF SPMP USING MUTANT HUMAN LYSOZYMES | 分子名称: | PROTEIN (LYSOZYME), SODIUM ION | 著者 | Takano, K, Ota, M, Ogasahara, K, Yamagata, Y, Nishikawa, K, Yutani, K. | 登録日 | 1999-01-25 | 公開日 | 1999-02-02 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Experimental verification of the 'stability profile of mutant protein' (SPMP) data using mutant human lysozymes. Protein Eng., 12, 1999
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7KD8
| TtgR C137I I141W M167L F168Y mutant in complex with resveratrol | 分子名称: | HTH-type transcriptional regulator TtgR, MAGNESIUM ION, RESVERATROL | 著者 | Bingman, C.A, Nishikawa, K.K, Smith, R.W, Raman, S. | 登録日 | 2020-10-08 | 公開日 | 2021-10-06 | 最終更新日 | 2023-10-18 | 実験手法 | X-RAY DIFFRACTION (1.71 Å) | 主引用文献 | Epistasis shapes the fitness landscape of an allosteric specificity switch. Nat Commun, 12, 2021
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7K1A
| TtgR quadruple mutant (C137I I141W M167L F168Y) | 分子名称: | HTH-type transcriptional regulator TtgR, MAGNESIUM ION | 著者 | Bingman, C.A, Nishikawa, K.K, Smith, R.W, Raman, S. | 登録日 | 2020-09-07 | 公開日 | 2021-10-06 | 最終更新日 | 2023-10-18 | 実験手法 | X-RAY DIFFRACTION (1.75 Å) | 主引用文献 | Epistasis shapes the fitness landscape of an allosteric specificity switch. Nat Commun, 12, 2021
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7K1C
| TtgR in complex with resveratrol | 分子名称: | HTH-type transcriptional regulator TtgR, MAGNESIUM ION, RESVERATROL | 著者 | Bingman, C.A, Nishikawa, K.K, Smith, R.W, Raman, S. | 登録日 | 2020-09-07 | 公開日 | 2021-10-06 | 最終更新日 | 2023-10-18 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Epistasis shapes the fitness landscape of an allosteric specificity switch. Nat Commun, 12, 2021
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8GCL
| Cryo-EM structure of hAQP2 in DDM | 分子名称: | Aquaporin-2 | 著者 | Kamegawa, A, Suzuki, S, Nishikawa, K, Numoto, N, Suzuki, H, Fujiyoshi, Y. | 登録日 | 2023-03-02 | 公開日 | 2023-06-21 | 最終更新日 | 2024-06-19 | 実験手法 | ELECTRON MICROSCOPY (2.89 Å) | 主引用文献 | Structural analysis of the water channel AQP2 by single-particle cryo-EM. J.Struct.Biol., 215, 2023
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2D57
| Double layered 2D crystal structure of AQUAPORIN-4 (AQP4M23) at 3.2 a resolution by electron crystallography | 分子名称: | Aquaporin-4 | 著者 | Hiroaki, Y, Tani, K, Kamegawa, A, Gyobu, N, Nishikawa, K, Suzuki, H, Walz, T, Sasaki, S, Mitsuoka, K, Kimura, K, Mizoguchi, A, Fujiyoshi, Y. | 登録日 | 2005-10-29 | 公開日 | 2006-01-31 | 最終更新日 | 2023-11-08 | 実験手法 | ELECTRON CRYSTALLOGRAPHY (3.2 Å) | 主引用文献 | Implications of the Aquaporin-4 Structure on Array Formation and Cell Adhesion J.Mol.Biol., 355, 2005
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7D6Q
| Crystal structure of the Stx2a | 分子名称: | 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, Shiga toxin 2 B subunit, rRNA N-glycosylase | 著者 | Takahashi, M, Tamada, M, Hibino, M, Senda, M, Okuda, A, Miyazawa, A, Senda, T, Nishikawa, K. | 登録日 | 2020-10-01 | 公開日 | 2021-04-14 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Identification of a peptide motif that potently inhibits two functionally distinct subunits of Shiga toxin. Commun Biol, 4, 2021
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7D6R
| Crystal structure of the Stx2a complexed with MMA betaAla peptide | 分子名称: | 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, MMA betaAla peptide, Shiga toxin 2 B subunit, ... | 著者 | Takahashi, M, Tamada, M, Hibino, M, Senda, M, Okuda, A, Miyazawa, A, Senda, T, Nishikawa, K. | 登録日 | 2020-10-01 | 公開日 | 2021-04-14 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Identification of a peptide motif that potently inhibits two functionally distinct subunits of Shiga toxin. Commun Biol, 4, 2021
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7VHC
| Crystal structure of the STX2a complexed with AR4A peptide | 分子名称: | 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, Shiga toxin 2 B subunit, inhibitor peptide, ... | 著者 | Senda, M, Takahashi, M, Nishikawa, K, Senda, T. | 登録日 | 2021-09-22 | 公開日 | 2022-07-20 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | A unique peptide-based pharmacophore identifies an inhibitory compound against the A-subunit of Shiga toxin. Sci Rep, 12, 2022
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7VHF
| Crystal structure of the STX2a complexed with RRA peptide | 分子名称: | 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, GLYCEROL, RRA peptide, ... | 著者 | Senda, M, Takahashi, M, Nishikawa, K, Senda, T. | 登録日 | 2021-09-22 | 公開日 | 2022-07-20 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.75 Å) | 主引用文献 | A unique peptide-based pharmacophore identifies an inhibitory compound against the A-subunit of Shiga toxin. Sci Rep, 12, 2022
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7VHE
| Crystal structure of the STX2a complexed with RRRA peptide | 分子名称: | 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, GLYCEROL, RRRA peptide, ... | 著者 | Senda, M, Takahashi, M, Nishikawa, K, Senda, T. | 登録日 | 2021-09-22 | 公開日 | 2022-07-20 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | A unique peptide-based pharmacophore identifies an inhibitory compound against the A-subunit of Shiga toxin. Sci Rep, 12, 2022
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8IHI
| Cryo-EM structure of HCA2-Gi complex with acifran | 分子名称: | (5~{S})-5-methyl-4-oxidanylidene-5-phenyl-furan-2-carboxylic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ... | 著者 | Suzuki, S, Nishikawa, K, Suzuki, H, Fujiyoshi, Y. | 登録日 | 2023-02-22 | 公開日 | 2023-08-30 | 最終更新日 | 2023-12-06 | 実験手法 | ELECTRON MICROSCOPY (3.11 Å) | 主引用文献 | Structural basis of hydroxycarboxylic acid receptor signaling mechanisms through ligand binding. Nat Commun, 14, 2023
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7VHD
| Crystal structure of the STX2a complexed with R4A peptide | 分子名称: | 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, ARG-ARG-ARG-ARG-ALA, Shiga toxin 2 B subunit, ... | 著者 | Senda, M, Takahashi, M, Nishikawa, K, Senda, T. | 登録日 | 2021-09-22 | 公開日 | 2022-07-20 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | A unique peptide-based pharmacophore identifies an inhibitory compound against the A-subunit of Shiga toxin. Sci Rep, 12, 2022
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8IHK
| Cryo-EM structure of HCA3-Gi complex with acifran (local) | 分子名称: | (5~{S})-5-methyl-4-oxidanylidene-5-phenyl-furan-2-carboxylic acid, Soluble cytochrome b562,Hydroxycarboxylic acid receptor 3 | 著者 | Suzuki, S, Nishikawa, K, Suzuki, H, Fujiyoshi, Y. | 登録日 | 2023-02-22 | 公開日 | 2023-08-30 | 最終更新日 | 2023-12-06 | 実験手法 | ELECTRON MICROSCOPY (3.21 Å) | 主引用文献 | Structural basis of hydroxycarboxylic acid receptor signaling mechanisms through ligand binding. Nat Commun, 14, 2023
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8IHH
| Cryo-EM structure of HCA2-Gi complex with LUF6283 | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 5-butyl-1~{H}-pyrazole-3-carboxylic acid, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ... | 著者 | Suzuki, S, Nishikawa, K, Suzuki, H, Fujiyoshi, Y. | 登録日 | 2023-02-22 | 公開日 | 2023-08-30 | 最終更新日 | 2023-12-06 | 実験手法 | ELECTRON MICROSCOPY (3.06 Å) | 主引用文献 | Structural basis of hydroxycarboxylic acid receptor signaling mechanisms through ligand binding. Nat Commun, 14, 2023
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