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PDB: 15 件
5DIC
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Fatty acid binding protein OBP56a from the oral disk of the blowfly Phormia regina
分子名称: Odorant-binding protein, PALMITIC ACID
著者Ishida, Y, Leal, W.S, Wilson, D.K.
登録日2015-08-31
公開日2016-10-05
実験手法X-RAY DIFFRACTION (1.185 Å)
主引用文献In preparation
To Be Published
7XMC
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BU of 7xmc by Molmil
Cryo-EM structure of Cytochrome bo3 from Escherichia coli, apo structure with DMSO
分子名称: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, COPPER (II) ION, Cytochrome bo(3) ubiquinol oxidase subunit 1, ...
著者Nishida, Y, Shigematsu, H, Iwamoto, T, Takashima, S, Shintani, Y.
登録日2022-04-25
公開日2022-12-21
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (3.09 Å)
主引用文献Identifying antibiotics based on structural differences in the conserved allostery from mitochondrial heme-copper oxidases.
Nat Commun, 13, 2022
7XMD
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BU of 7xmd by Molmil
Cryo-EM structure of Cytochrome bo3 from Escherichia coli, the structure complexed with an allosteric inhibitor N4
分子名称: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, COPPER (II) ION, Cytochrome bo(3) ubiquinol oxidase subunit 1, ...
著者Nishida, Y, Shigematsu, H, Iwamoto, T, Takashima, S, Shintani, Y.
登録日2022-04-25
公開日2022-12-21
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (2.99 Å)
主引用文献Identifying antibiotics based on structural differences in the conserved allostery from mitochondrial heme-copper oxidases.
Nat Commun, 13, 2022
7XMA
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Crystal structure of Bovine heart cytochrome c oxidase, apo structure with DMSO
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
著者Nishida, Y, Shinzawa-Itoh, K, Mizuno, N, Kumasaka, T, Yoshikawa, S, Tsukihara, T, Takashima, S, Shintani, Y.
登録日2022-04-25
公開日2022-12-21
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Identifying antibiotics based on structural differences in the conserved allostery from mitochondrial heme-copper oxidases.
Nat Commun, 13, 2022
7XMB
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BU of 7xmb by Molmil
Crystal structure of Bovine heart cytochrome c oxidase, the structure complexed with an allosteric inhibitor T113
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
著者Nishida, Y, Shinzawa-Itoh, K, Mizuno, N, Kumasaka, T, Yoshikawa, S, Tsukihara, T, Shintani, Y, Takashima, S.
登録日2022-04-25
公開日2022-12-21
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Identifying antibiotics based on structural differences in the conserved allostery from mitochondrial heme-copper oxidases.
Nat Commun, 13, 2022
3AF5
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The crystal structure of an archaeal CPSF subunit, PH1404 from Pyrococcus horikoshii
分子名称: ACETIC ACID, Putative uncharacterized protein PH1404, SULFATE ION, ...
著者Nishida, Y, Ishikawa, H, Nakagawa, N, Masui, R, Kuramitsu, S.
登録日2010-02-23
公開日2010-04-21
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of an archaeal cleavage and polyadenylation specificity factor subunit from Pyrococcus horikoshii
Proteins, 78, 2010
3AF6
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The crystal structure of an archaeal CPSF subunit, PH1404 from Pyrococcus horikoshii complexed with RNA-analog
分子名称: 5'-R(*(SSU)P*(SSU)P*(SSU)P*(SSU)P*(SSU)P*(SSU))-3', Putative uncharacterized protein PH1404, SULFATE ION, ...
著者Nishida, Y, Ishikawa, H, Nakagawa, N, Masui, R, Kuramitsu, S.
登録日2010-02-24
公開日2010-04-21
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of an archaeal cleavage and polyadenylation specificity factor subunit from Pyrococcus horikoshii
Proteins, 78, 2010
6MSP
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BU of 6msp by Molmil
De novo Designed Protein Foldit3
分子名称: De novo Designed Protein Foldit3
著者Liu, G, Ishida, Y, Swapna, G.V.T, Kleinfelter, S, Koepnick, B, Baker, D, Montelione, G.T.
登録日2018-10-17
公開日2019-06-12
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献De novo protein design by citizen scientists.
Nature, 570, 2019
8JVG
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BU of 8jvg by Molmil
Crystal structure of dephospho-coenzyme A kinase
分子名称: GTP-dependent dephospho-CoA kinase
著者Kita, A, Ishida, Y, Shimosaka, T, Michimori, Y, Makarova, K, Koonin, E, Atomi, H, Miki, K.
登録日2023-06-28
公開日2024-06-19
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of GTP-dependent dephospho-coenzyme A kinase from the hyperthermophilic archaeon, Thermococcus kodakarensis.
Proteins, 92, 2024
8JVC
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BU of 8jvc by Molmil
Crystal structure of dephospho-coenzyme A kinase
分子名称: GTP-dependent dephospho-CoA kinase
著者Kita, A, Ishida, Y, Shimosaka, T, Michimori, Y, Makarova, K, Koonin, E, Atomi, H, Miki, K.
登録日2023-06-28
公開日2024-06-19
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystal structure of GTP-dependent dephospho-coenzyme A kinase from the hyperthermophilic archaeon, Thermococcus kodakarensis.
Proteins, 92, 2024
8JVF
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BU of 8jvf by Molmil
Crystal structure of dephospho-coenzyme A kinase
分子名称: GTP-dependent dephospho-CoA kinase, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION
著者Kita, A, Ishida, Y, Shimosaka, T, Michimori, Y, Makarova, K, Koonin, E, Atomi, H, Miki, K.
登録日2023-06-28
公開日2024-06-19
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of GTP-dependent dephospho-coenzyme A kinase from the hyperthermophilic archaeon, Thermococcus kodakarensis.
Proteins, 92, 2024
2JPO
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BU of 2jpo by Molmil
NMR structure of Antheraea polyphemus pheromone-binding protein 1 at pH 4.5
分子名称: Pheromone-binding protein
著者Damberger, F.F, Wuthrich, K, Leal, W.S, Ishida, Y.
登録日2007-05-20
公開日2007-10-30
最終更新日2011-10-12
実験手法SOLUTION NMR
主引用文献Structural Basis of Ligand Binding and Release in Insect Pheromone-Binding Proteins: NMR Structure of Antheraea polyphemus PBP1 at pH 4.5
J.Mol.Biol., 373, 2007
2ERB
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BU of 2erb by Molmil
AgamOBP1, and odorant binding protein from Anopheles gambiae complexed with PEG
分子名称: 2,5,8,11,14,17,20,23,26,29,32,35,38,41,44,47,50,53,56,59,62,65,68,71,74,77,80-HEPTACOSAOXADOOCTACONTAN-82-OL, MAGNESIUM ION, odorant binding protein
著者Wogulis, M, Morgan, T, Ishida, Y, Leal, W.S, Wilson, D.K.
登録日2005-10-24
公開日2005-12-13
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献The crystal structure of an odorant binding protein from Anopheles gambiae: Evidence for a common ligand release mechanism.
Biochem.Biophys.Res.Commun., 339, 2006
3WEB
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BU of 3web by Molmil
Crystal structure of a Niemann-Pick type C2 protein from Japanese carpenter ant in complex with oleic acid
分子名称: Niemann-Pick type C2 protein, OLEIC ACID
著者Fujimoto, Z, Tsuchiya, W, Ishida, Y, Yamazaki, T.
登録日2013-07-02
公開日2014-02-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Niemann-Pick type C2 protein mediating chemical communication in the worker ant
Proc.Natl.Acad.Sci.USA, 111, 2014
3WEA
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BU of 3wea by Molmil
Crystal structure of a Niemann-Pick type C2 protein from Japanese carpenter ant
分子名称: Niemann-Pick type C2 protein
著者Fujimoto, Z, Tsuchiya, W, Ishida, Y, Yamazaki, T.
登録日2013-07-02
公開日2014-02-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Niemann-Pick type C2 protein mediating chemical communication in the worker ant
Proc.Natl.Acad.Sci.USA, 111, 2014

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件を2024-09-04に公開中

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