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PDB: 257 件

3WDQ
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Crystal structure of beta-mannanase from a symbiotic protist of the termite Reticulitermes speratus
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-mannanase, MAGNESIUM ION, ...
著者Tsukagoshi, H, Ishida, T, Touhara, K.K, Igarashi, K, Samejima, M, Fushinobu, S, Kitamoto, K, Arioka, M.
登録日2013-06-20
公開日2014-03-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Structural and Biochemical Analyses of Glycoside Hydrolase Family 26 beta-Mannanase from a Symbiotic Protist of the Termite Reticulitermes speratus
J.Biol.Chem., 289, 2014
3WHE
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BU of 3whe by Molmil
A new conserved neutralizing epitope at the globular head of hemagglutinin in H3N2 influenza viruses
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Fujii, Y, Sumida, T, Shirouzu, M, Yokoyama, S.
登録日2013-08-25
公開日2014-04-23
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (4 Å)
主引用文献Conserved neutralizing epitope at globular head of hemagglutinin in H3N2 influenza viruses.
J.Virol., 88, 2014
3WQB
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BU of 3wqb by Molmil
Crystal structure of aeromonas sobria serine protease (ASP) and the chaperone (ORF2) complex
分子名称: CALCIUM ION, Extracellular serine protease, Open reading frame 2
著者Kobayashi, H, Yoshida, T, Miyakawa, T, Kato, R, Tashiro, M, Yamanaka, H, Tanokura, M, Tsuge, H.
登録日2014-01-24
公開日2015-03-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.41 Å)
主引用文献Structural Basis for Action of the External Chaperone for a Propeptide-deficient Serine Protease from Aeromonas sobria.
J.Biol.Chem., 290, 2015
3X2O
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BU of 3x2o by Molmil
Neutron and X-ray joint refined structure of PcCel45A apo form at 298K.
分子名称: Endoglucanase V-like protein
著者Nakamura, A, Ishida, T, Kusaka, K, Yamada, T, Tanaka, I, Niimura, N, Samejima, M, Igarashi, K.
登録日2014-12-22
公開日2015-10-07
最終更新日2019-12-18
実験手法NEUTRON DIFFRACTION (1.5 Å), X-RAY DIFFRACTION
主引用文献"Newton's cradle" proton relay with amide-imidic acid tautomerization in inverting cellulase visualized by neutron crystallography.
Sci Adv, 1, 2015
3X2P
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BU of 3x2p by Molmil
Neutron and X-ray joint refined structure of PcCel45A with cellopentaose at 298K.
分子名称: Endoglucanase V-like protein, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
著者Nakamura, A, Ishida, T, Kusaka, K, Yamada, T, Tanaka, I, Niimura, N, Samejima, M, Igarashi, K.
登録日2014-12-22
公開日2015-10-14
最終更新日2020-07-29
実験手法NEUTRON DIFFRACTION (1.518 Å), X-RAY DIFFRACTION
主引用文献"Newton's cradle" proton relay with amide-imidic acid tautomerization in inverting cellulase visualized by neutron crystallography.
Sci Adv, 1, 2015
2ELG
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BU of 2elg by Molmil
The rare crystallographic structure of d(CGCGCG)2: The natural spermidine molecule bound to the minor groove of left-handed Z-DNA d(CGCGCG)2 at 10 degree celsius
分子名称: DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DG)-3'), MAGNESIUM ION, SODIUM ION, ...
著者Ohishi, H, Tozuka, Y, Zhou, D.Y, Ishida, T, Nakatani, K.
登録日2007-03-27
公開日2008-04-01
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献The rare crystallographic structure of d(CGCGCG)(2): The natural spermidine molecule bound to the minor groove of left-handed Z-DNA d(CGCGCG)(2) at 10 degrees C
Biochem.Biophys.Res.Commun., 358, 2007
4ALT
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BU of 4alt by Molmil
X-Ray photoreduction of Polysaccharide monooxygenase CBM33
分子名称: CHITIN BINDING PROTEIN, COPPER (II) ION, DI(HYDROXYETHYL)ETHER
著者Gudmundsson, M, Wu, M, Ishida, T, Momeni, M.H, Vaaje-Kolstad, G, Eijsink, V, Sandgren, M.
登録日2012-03-05
公開日2013-02-27
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.49 Å)
主引用文献Structural and Electronic Snapshots During the Transition from a Cu(II) to Cu(I) Metal Center of a Lytic Polysaccharide Monooxygenase by X-Ray Photo-Reduction.
J.Biol.Chem., 289, 2014
4ALS
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BU of 4als by Molmil
X-Ray photoreduction of Polysaccharide monooxygenase CBM33
分子名称: CHITIN BINDING PROTEIN, COPPER (II) ION, DI(HYDROXYETHYL)ETHER
著者Gudmundsson, M, Wu, M, Ishida, T, Momeni, M.H, Vaaje-Kolstad, G, Eijsink, V, Sandgren, M.
登録日2012-03-05
公開日2013-02-27
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.47 Å)
主引用文献Structural and Electronic Snapshots During the Transition from a Cu(II) to Cu(I) Metal Center of a Lytic Polysaccharide Monooxygenase by X-Ray Photo-Reduction.
J.Biol.Chem., 289, 2014
4ALE
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BU of 4ale by Molmil
Structure changes of Polysaccharide monooxygenase CBM33A from Enterococcus faecalis by X-ray induced photoreduction.
分子名称: CHITIN BINDING PROTEIN, COPPER (II) ION, DI(HYDROXYETHYL)ETHER
著者Gudmundsson, M, Wu, M, Ishida, T, Momeni, M.H, Vaaje-Kolstad, G, Eijsink, V, Sandgren, M.
登録日2012-03-02
公開日2013-02-27
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Structural and Electronic Snapshots During the Transition from a Cu(II) to Cu(I) Metal Center of a Lytic Polysaccharide Monooxygenase by X-Ray Photo-Reduction.
J.Biol.Chem., 289, 2014
4ALQ
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BU of 4alq by Molmil
X-Ray photoreduction of Polysaccharide monooxygenase CBM33
分子名称: CHITIN BINDING PROTEIN, COPPER (II) ION, DI(HYDROXYETHYL)ETHER
著者Gudmundsson, M, Wu, M, Ishida, T, Momeni, M.H, Vaaje-Kolstad, G, Eijsink, V, Sandgren, M.
登録日2012-03-05
公開日2013-02-27
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Structural and Electronic Snapshots During the Transition from a Cu(II) to Cu(I) Metal Center of a Lytic Polysaccharide Monooxygenase by X-Ray Photo-Reduction.
J.Biol.Chem., 289, 2014
4ALR
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BU of 4alr by Molmil
X-Ray photoreduction of Polysaccharide monooxygenase CBM33
分子名称: CHITIN BINDING PROTEIN, COPPER (II) ION, DI(HYDROXYETHYL)ETHER
著者Gudmundsson, M, Wu, M, Ishida, T, Momeni, M.H, Vaaje-Kolstad, G, Eijsink, V, Sandgren, M.
登録日2012-03-05
公開日2013-02-27
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.49 Å)
主引用文献Structural and Electronic Snapshots During the Transition from a Cu(II) to Cu(I) Metal Center of a Lytic Polysaccharide Monooxygenase by X-Ray Photo-Reduction.
J.Biol.Chem., 289, 2014
4B5Q
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BU of 4b5q by Molmil
The lytic polysaccharide monooxygenase GH61D structure from the basidiomycota fungus Phanerochaete chrysosporium
分子名称: COPPER (II) ION, GLYCEROL, GLYCOSIDE HYDROLASE FAMILY 61 PROTEIN D, ...
著者Wu, M, Beckham, G.T, Larsson, A.M, Ishida, T, Kim, S, Crowley, M.F, Payne, C.M, Horn, S.J, Westereng, B, Stahlberg, J, Eijsink, V.G.H, Sandgren, M.
登録日2012-08-07
公開日2013-04-03
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal Structure and Computational Characterization of the Lytic Polysaccharide Monooxygenase Gh61D from the Basidiomycota Fungus Phanerochaete Chrysosporium
J.Biol.Chem., 288, 2013
4ALC
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BU of 4alc by Molmil
X-Ray photoreduction of Polysaccharide monooxigenase CBM33
分子名称: CHITIN BINDING PROTEIN, COPPER (II) ION, DI(HYDROXYETHYL)ETHER
著者Gudmundsson, M, Wu, M, Ishida, T, Momeni, M.H, Vaaje-Kolstad, G, Eijsink, V, Sandgren, M.
登録日2012-03-02
公開日2013-02-27
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (1.49 Å)
主引用文献Structural and Electronic Snapshots During the Transition from a Cu(II) to Cu(I) Metal Center of a Lytic Polysaccharide Monooxygenase by X-Ray Photo-Reduction.
J.Biol.Chem., 289, 2014
3AM7
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BU of 3am7 by Molmil
Crystal structure of the ternary complex of eIF4E-M7GTP-4EBP2 peptide
分子名称: 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE, Eukaryotic translation initiation factor 4E, Eukaryotic translation initiation factor 4E-binding protein 2
著者Tomoo, K, Fukuyo, A, In, Y, Ishida, T.
登録日2010-08-17
公開日2011-08-17
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural scaffold for eIF4E binding selectivity of 4E-BP isoforms: crystal structure of eIF4E binding region of 4E-BP2 and its comparison with that of 4E-BP1.
J.Pept.Sci., 17, 2011
3W2Y
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BU of 3w2y by Molmil
Crystal structure of DNA uridine endonuclease Mth212 mutant W205S
分子名称: DI(HYDROXYETHYL)ETHER, Exodeoxyribonuclease, FORMIC ACID, ...
著者Tabata, N, Shida, T, Arai, R.
登録日2012-12-06
公開日2013-12-11
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of DNA uridine endonuclease Mth212
To be Published
3B1L
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BU of 3b1l by Molmil
Crystal Structure of parkin ubiquitin-like domain R33Q mutant
分子名称: E3 ubiquitin-protein ligase parkin
著者Tomoo, K, Ikemiya, A, Amami, Y, In, Y, Ishida, T.
登録日2011-07-04
公開日2012-07-04
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal Structure of parkin ubiquitin-like domain R33Q mutant
to be published
3X2M
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BU of 3x2m by Molmil
X-ray structure of PcCel45A with cellopentaose at 0.64 angstrom resolution.
分子名称: Endoglucanase V-like protein, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-alpha-D-glucopyranose, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
著者Nakamura, A, Ishida, T, Samejima, M, Igarashi, K.
登録日2014-12-22
公開日2015-10-14
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (0.64 Å)
主引用文献"Newton's cradle" proton relay with amide-imidic acid tautomerization in inverting cellulase visualized by neutron crystallography.
Sci Adv, 1, 2015
3X2K
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BU of 3x2k by Molmil
X-ray structure of PcCel45A D114N with cellopentaose at 95K.
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 3-methylpentane-1,5-diol, Endoglucanase V-like protein, ...
著者Nakamura, A, Ishida, T, Samejima, M, Igarashi, K.
登録日2014-12-22
公開日2015-10-07
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.182 Å)
主引用文献"Newton's cradle" proton relay with amide-imidic acid tautomerization in inverting cellulase visualized by neutron crystallography.
Sci Adv, 1, 2015
3X2I
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BU of 3x2i by Molmil
X-ray structure of PcCel45A N92D apo form at 298K.
分子名称: 3-methylpentane-1,5-diol, Endoglucanase V-like protein
著者Nakamura, A, Ishida, T, Samejima, M, Igarashi, K.
登録日2014-12-22
公開日2015-10-07
最終更新日2019-12-18
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献"Newton's cradle" proton relay with amide-imidic acid tautomerization in inverting cellulase visualized by neutron crystallography.
Sci Adv, 1, 2015
3X2H
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BU of 3x2h by Molmil
X-ray structure of PcCel45A N92D with cellopentaose at 95K.
分子名称: 3-methylpentane-1,5-diol, Endoglucanase V-like protein, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
著者Nakamura, A, Ishida, T, Samejima, M, Igarashi, K.
登録日2014-12-22
公開日2015-10-07
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (0.99 Å)
主引用文献"Newton's cradle" proton relay with amide-imidic acid tautomerization in inverting cellulase visualized by neutron crystallography.
Sci Adv, 1, 2015
3X2G
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BU of 3x2g by Molmil
X-ray structure of PcCel45A N92D apo form at 100K
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 3-methylpentane-1,5-diol, Endoglucanase V-like protein
著者Nakamura, A, Ishida, T, Samejima, M, Igarashi, K.
登録日2014-12-22
公開日2015-10-07
最終更新日2019-12-18
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献"Newton's cradle" proton relay with amide-imidic acid tautomerization in inverting cellulase visualized by neutron crystallography.
Sci Adv, 1, 2015
3X2J
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BU of 3x2j by Molmil
X-ray structure of PcCel45A D114N apo form at 95K.
分子名称: 3-methylpentane-1,5-diol, Endoglucanase V-like protein
著者Nakamura, A, Ishida, T, Samejima, M, Igarashi, K.
登録日2014-12-22
公開日2015-10-07
最終更新日2019-12-18
実験手法X-RAY DIFFRACTION (1.301 Å)
主引用文献"Newton's cradle" proton relay with amide-imidic acid tautomerization in inverting cellulase visualized by neutron crystallography.
Sci Adv, 1, 2015
3X2L
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BU of 3x2l by Molmil
X-ray structure of PcCel45A apo form at 95K.
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 3-methylpentane-1,5-diol, Endoglucanase V-like protein
著者Nakamura, A, Ishida, T, Ohta, K, Tanaka, H, Inaka, K, Samejima, M, Igarashi, K.
登録日2014-12-22
公開日2015-10-14
最終更新日2019-12-18
実験手法X-RAY DIFFRACTION (0.83 Å)
主引用文献"Newton's cradle" proton relay with amide-imidic acid tautomerization in inverting cellulase visualized by neutron crystallography.
Sci Adv, 1, 2015
3X2N
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BU of 3x2n by Molmil
Proton relay pathway in inverting cellulase
分子名称: Endoglucanase V-like protein, SULFATE ION
著者Nakamura, A, Ishida, T, Fushinobu, S, Igarashi, K, Samejima, M.
登録日2014-12-22
公開日2015-10-14
最終更新日2019-12-18
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献"Newton's cradle" proton relay with amide-imidic acid tautomerization in inverting cellulase visualized by neutron crystallography.
Sci Adv, 1, 2015
4AX6
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BU of 4ax6 by Molmil
HYPOCREA JECORINA CEL6A D221A MUTANT SOAKED WITH 6-CHLORO-4- PHENYLUMBELLIFERYL-BETA-CELLOBIOSIDE
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 6-chloranyl-7-oxidanyl-4-phenyl-chromen-2-one, EXOGLUCANASE 2, ...
著者Wu, M, Nerinckx, W, Piens, K, Ishida, T, Hansson, H, Stahlberg, J, Sandgren, M.
登録日2012-06-10
公開日2013-01-23
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Rational Design, Synthesis, Evaluation and Enzyme-Substrate Structures of Improved Fluorogenic Substrates for Family 6 Glycoside Hydrolases.
FEBS J., 280, 2013

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