Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 17801 件

3ESP
DownloadVisualize
BU of 3esp by Molmil
Human transthyretin (TTR) complexed with N-(3,5-Dibromo-4-hydroxyphenyl)-3,5-dimethyl-4-hydroxybenzamide
分子名称: N-(3,5-dibromo-4-hydroxyphenyl)-4-hydroxy-3,5-dimethylbenzamide, Transthyretin
著者Connelly, S, Wilson, I.A.
登録日2008-10-06
公開日2009-04-07
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.31 Å)
主引用文献Toward optimization of the second aryl substructure common to transthyretin amyloidogenesis inhibitors using biochemical and structural studies.
J.Med.Chem., 52, 2009
8BI3
DownloadVisualize
BU of 8bi3 by Molmil
Structure of E. coli Class 2 L-asparaginase EcAIII, mutant M200W (crystal M200W#1)
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ...
著者Sciuk, A, Ruszkowski, M, Jaskolski, M, Loch, J.I.
登録日2022-11-01
公開日2023-05-03
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.452 Å)
主引用文献The effects of nature-inspired amino acid substitutions on structural and biochemical properties of the E. coli L-asparaginase EcAIII.
Protein Sci., 32, 2023
1O25
DownloadVisualize
BU of 1o25 by Molmil
Crystal structure of Thymidylate Synthase Complementing Protein (TM0449) from Thermotoga maritima with dUMP at 2.4 A resolution
分子名称: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, Thymidylate synthase thyX
著者Mathews, I.I, Deacon, A.M, Canaves, J.M, McMullan, D, Lesley, S.A, Agarwalla, S, Kuhn, P, Joint Center for Structural Genomics (JCSG)
登録日2003-02-20
公開日2003-06-24
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Functional Analysis of Substrate and Cofactor Complex Structures of a Thymidylate Synthase-Complementing Protein
Structure, 11, 2003
8BKF
DownloadVisualize
BU of 8bkf by Molmil
Structure of E. coli Class 2 L-asparaginase EcAIII, mutant M200T (crystal M200T#o)
分子名称: CHLORIDE ION, Isoaspartyl peptidase subunit alpha, Isoaspartyl peptidase subunit beta, ...
著者Sciuk, A, Ruszkowski, M, Jaskolski, M, Loch, J.I.
登録日2022-11-09
公開日2023-05-03
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.221 Å)
主引用文献The effects of nature-inspired amino acid substitutions on structural and biochemical properties of the E. coli L-asparaginase EcAIII.
Protein Sci., 32, 2023
8BP9
DownloadVisualize
BU of 8bp9 by Molmil
Structure of E. coli Class 2 L-asparaginase EcAIII, mutant M200W (crystal M200W#2)
分子名称: CHLORIDE ION, Isoaspartyl peptidase subunit alpha, Isoaspartyl peptidase subunit beta, ...
著者Sciuk, A, Jaskolski, M, Loch, J.I.
登録日2022-11-16
公開日2023-05-03
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献The effects of nature-inspired amino acid substitutions on structural and biochemical properties of the E. coli L-asparaginase EcAIII.
Protein Sci., 32, 2023
4GPG
DownloadVisualize
BU of 4gpg by Molmil
X/N joint refinement of Achromobacter Lyticus Protease I free form at pD8.0
分子名称: Protease 1
著者Ohnishi, Y, Yamada, T, Kurihara, K, Tanaka, I, Sakiyama, F, Masaki, T, Niimura, N.
登録日2012-08-21
公開日2013-09-11
最終更新日2023-11-08
実験手法NEUTRON DIFFRACTION (1.895 Å), X-RAY DIFFRACTION
主引用文献Neutron and X-ray crystallographic analysis of Achromobacter protease I at pD 8.0: protonation states and hydration structure in the free-form.
Biochim.Biophys.Acta, 1834, 2013
5JTW
DownloadVisualize
BU of 5jtw by Molmil
Crystal structure of complement C4b re-refined using iMDFF
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Complement C4-A
著者Croll, T.I, Andersen, G.R.
登録日2016-05-09
公開日2016-08-10
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Re-evaluation of low-resolution crystal structures via interactive molecular-dynamics flexible fitting (iMDFF): a case study in complement C4.
Acta Crystallogr D Struct Biol, 72, 2016
3E8K
DownloadVisualize
BU of 3e8k by Molmil
Crystal structure of HK97 Prohead II
分子名称: Major capsid protein
著者Gertsman, I, Speir, J, Johnson, J.E.
登録日2008-08-20
公開日2009-02-17
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3.65 Å)
主引用文献An unexpected twist in viral capsid maturation.
Nature, 458, 2009
8BS8
DownloadVisualize
BU of 8bs8 by Molmil
Bovine naive ultralong antibody AbD08 collected at 100K
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Heavy chain, Light chain
著者Clarke, J.D, Douangamath, A, Mikolajek, H, Stuart, D.I, Owens, R.J.
登録日2022-11-24
公開日2023-05-24
最終更新日2024-07-17
実験手法X-RAY DIFFRACTION (1.59 Å)
主引用文献The impact of exchanging the light and heavy chains on the structures of bovine ultralong antibodies.
Acta Crystallogr.,Sect.F, 80, 2024
8BQO
DownloadVisualize
BU of 8bqo by Molmil
Structure of E.coli Class 2 L-asparaginase EcAIII, mutant M200I
分子名称: CHLORIDE ION, GLYCEROL, Isoaspartyl peptidase subunit alpha, ...
著者Sciuk, A, Ruszkowski, M, Jaskolski, M, Loch, J.I.
登録日2022-11-21
公開日2023-05-03
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The effects of nature-inspired amino acid substitutions on structural and biochemical properties of the E. coli L-asparaginase EcAIII.
Protein Sci., 32, 2023
1K3N
DownloadVisualize
BU of 1k3n by Molmil
NMR Structure of the FHA1 Domain of Rad53 in Complex with a Rad9-derived Phosphothreonine (at T155) Peptide
分子名称: DNA repair protein Rad9, Protein Kinase SPK1
著者Yuan, C, Yongkiettrakul, S, Byeon, I.-J.L, Zhou, S, Tsai, M.-D.
登録日2001-10-03
公開日2001-12-05
最終更新日2022-02-23
実験手法SOLUTION NMR
主引用文献Solution structures of two FHA1-phosphothreonine peptide complexes provide insight into the structural basis of the ligand specificity of FHA1 from yeast Rad53.
J.Mol.Biol., 314, 2001
5JT1
DownloadVisualize
BU of 5jt1 by Molmil
The 3D structure of Ni-reconstituted U489C variant of [NiFeSe] hydrogenase from Desulfovibrio vulgaris Hildenborough in the oxidized state at 1.35 Angstrom resolution
分子名称: CARBONMONOXIDE-(DICYANO) IRON, FE (II) ION, HYDROSULFURIC ACID, ...
著者Marques, M.C, Pereira, I.A.C, Matias, P.M.
登録日2016-05-09
公開日2017-03-22
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献The direct role of selenocysteine in [NiFeSe] hydrogenase maturation and catalysis.
Nat. Chem. Biol., 13, 2017
1YM5
DownloadVisualize
BU of 1ym5 by Molmil
Crystal structure of YHI9, the yeast member of the phenazine biosynthesis PhzF enzyme superfamily.
分子名称: Hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic region
著者Liger, D, Quevillon-Cheruel, S, Sorel, I, Bremang, M, Blondeau, K, Aboulfath, I, Janin, J, Van Tilbeurgh, H, Leulliot, N, Paris-Sud Yeast Structural Genomics (YSG)
登録日2005-01-20
公開日2005-08-02
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Crystal structure of YHI9, the yeast member of the phenazine biosynthesis PhzF enzyme superfamily
Proteins, 60, 2005
5AIY
DownloadVisualize
BU of 5aiy by Molmil
R6 HUMAN INSULIN HEXAMER (SYMMETRIC), NMR, 'RED' SUBSTATE, AVERAGE STRUCTURE
分子名称: PHENOL, PROTEIN (INSULIN)
著者O'Donoghue, S.I, Chang, X, Abseher, R, Nilges, M, Led, J.J.
登録日1998-12-29
公開日2000-02-28
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Unraveling the symmetry ambiguity in a hexamer: calculation of the R6 human insulin structure.
J.Biomol.NMR, 16, 2000
5JSH
DownloadVisualize
BU of 5jsh by Molmil
The 3D structure of recombinant [NiFeSe] hydrogenase from Desulfovibrio Vulgaris Hildenborough in the oxidized state at 1.30 Angstrom
分子名称: CARBONMONOXIDE-(DICYANO) IRON, CHLORIDE ION, FE (II) ION, ...
著者Marques, M.C, Pereira, I.A.C, Matias, P.M.
登録日2016-05-08
公開日2017-03-22
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献The direct role of selenocysteine in [NiFeSe] hydrogenase maturation and catalysis.
Nat. Chem. Biol., 13, 2017
1K4P
DownloadVisualize
BU of 1k4p by Molmil
Crystal Structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase in complex with zinc ions
分子名称: 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase, SULFATE ION, ZINC ION
著者Liao, D.-I, Zheng, Y.-J, Viitanen, P.V, Jordan, D.B.
登録日2001-10-08
公開日2002-03-06
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Structural definition of the active site and catalytic mechanism of 3,4-dihydroxy-2-butanone-4-phosphate synthase.
Biochemistry, 41, 2002
6E7H
DownloadVisualize
BU of 6e7h by Molmil
Crystal structure of H5 hemagglutinin mutant Y161A from A/Viet Nam/1203/2004 H5N1 influenza virus in complex with 3'-GcLN
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin HA1 chain, ...
著者Tzarum, N, Wilson, I.A.
登録日2018-07-26
公開日2019-06-19
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献N-Glycolylneuraminic Acid as a Receptor for Influenza A Viruses.
Cell Rep, 27, 2019
5HCP
DownloadVisualize
BU of 5hcp by Molmil
Crystal structure of antimicrobial peptide Metalnikowin bound to the Thermus thermophilus 70S ribosome
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Gagnon, M.G, Roy, R.N, Lomakin, I.B, Florin, T, Mankin, A.S, Steitz, T.A.
登録日2016-01-04
公開日2016-04-06
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.894 Å)
主引用文献Structures of proline-rich peptides bound to the ribosome reveal a common mechanism of protein synthesis inhibition.
Nucleic Acids Res., 44, 2016
6EE1
DownloadVisualize
BU of 6ee1 by Molmil
Crystal structure of Mycobacterium tuberculosis ICL2 in complex with acetyl-CoA
分子名称: ACETYL COENZYME *A, Isocitrate lyase 2, MAGNESIUM ION
著者Bashiri, G, Bhusal, R, Leung, I.
登録日2018-08-12
公開日2019-08-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.36 Å)
主引用文献Acetyl-CoA-mediated activation of Mycobacterium tuberculosis isocitrate lyase 2.
Nat Commun, 10, 2019
6HF1
DownloadVisualize
BU of 6hf1 by Molmil
Mutant oxidoreductase fragment of mouse QSOX1 in complex with an antibody Fab
分子名称: Fab 316 heavy chain, Fab 316 light chain, Sulfhydryl oxidase 1
著者Grossman-Haham, I, Fass, D.
登録日2018-08-21
公開日2019-04-03
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献cis-Proline mutants of quiescin sulfhydryl oxidase 1 with altered redox properties undermine extracellular matrix integrity and cell adhesion in fibroblast cultures.
Protein Sci., 28, 2019
6HCS
DownloadVisualize
BU of 6hcs by Molmil
Crystal structure of CaM-peptide complex containing AzF at position 108
分子名称: CALCIUM ION, Calcium/calmodulin-dependent protein kinase type II subunit beta, Calmodulin-1
著者Creon, A, Josts, I, Tidow, H.
登録日2018-08-16
公開日2018-12-05
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Conformation-specific detection of calmodulin binding using the unnatural amino acid p-azido-phenylalanine (AzF) as an IR-sensor.
Struct Dyn, 5, 2018
8BBI
DownloadVisualize
BU of 8bbi by Molmil
Crystal structure of Xyn11 double mutant L271S, K275H from Psedothermotoga thermarum
分子名称: 1-methylethyl 1-thio-beta-D-galactopyranoside, Beta-xylanase, GLYCEROL
著者Cea-Rama, I, Sanz-Aparicio, J.
登録日2022-10-13
公開日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of Xyn11 double mutant L271S, K275H from Pseudothermotoga thermarum
To be published
5LJE
DownloadVisualize
BU of 5lje by Molmil
Crystal structure of holo human CRBP1/K40L,Q108L mutant
分子名称: RETINOL, Retinol-binding protein 1, SODIUM ION
著者Zanotti, G, Vallese, F, Berni, R, Menozzi, I.
登録日2016-07-18
公開日2017-01-18
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structural and molecular determinants affecting the interaction of retinol with human CRBP1.
J. Struct. Biol., 197, 2017
3GMP
DownloadVisualize
BU of 3gmp by Molmil
Structure of mouse CD1d in complex with PBS-25
分子名称: (2S,3S,4R)-N-OCTANOYL-1-[(ALPHA-D-GALACTOPYRANOSYL)OXY]-2-AMINO-OCTADECANE-3,4-DIOL, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Schiefner, A, Wilson, I.A.
登録日2009-03-14
公開日2009-11-10
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural evaluation of potent NKT cell agonists: implications for design of novel stimulatory ligands.
J.Mol.Biol., 394, 2009
7NB5
DownloadVisualize
BU of 7nb5 by Molmil
Structure of EstD11 S144A in complex with naproxen p-nitrophenol ester
分子名称: (4-nitrophenyl) (2~{S})-2-(6-methoxynaphthalen-2-yl)propanoate, EstD11 S144A
著者Miguel-Ruano, V, Rivera, I, Hermoso, J.A.
登録日2021-01-25
公開日2021-03-03
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.13 Å)
主引用文献Biochemical and Structural Characterization of a novel thermophilic esterase EstD11 provide catalytic insights for the HSL family.
Comput Struct Biotechnol J, 19, 2021

223532

件を2024-08-07に公開中

PDB statisticsPDBj update infoContact PDBjnumon