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PDB: 220 results

6HC5
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BU of 6hc5 by Molmil
The structure of the G. violaceus guanidine II riboswitch P2 stem-loop with audouine
Descriptor: 1-(5-carbamimidamidopentyl)guanidine, RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3'), SODIUM ION, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2018-08-14
Release date:2019-02-20
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.413 Å)
Cite:Structure-guided design of a high-affinity ligand for a riboswitch.
Rna, 25, 2019
5LR3
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BU of 5lr3 by Molmil
RNA duplex has central consecutive GA pairs flanked by G-U basepairs
Descriptor: RNA (5'-R(*GP*(CBV)P*CP*GP*GP*AP*UP*GP*GP*C)-3'), SULFATE ION
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2016-08-18
Release date:2017-06-21
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Control of box C/D snoRNP assembly by N(6)-methylation of adenine.
EMBO Rep., 18, 2017
5LR5
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BU of 5lr5 by Molmil
N6-methyladenine is accommodated in a conventional A-U basepair
Descriptor: RNA (5'-R(*GP*GP*(6MZ)P*CP*UP*AP*GP*UP*(CBV)P*C)-3'), SULFATE ION
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2016-08-18
Release date:2017-06-21
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Control of box C/D snoRNP assembly by N(6)-methylation of adenine.
EMBO Rep., 18, 2017
5NEF
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BU of 5nef by Molmil
The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with guanidine
Descriptor: GUANIDINE, RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3'), SODIUM ION, ...
Authors:Huang, L, Wang, J, Lilley, D.M.J.
Deposit date:2017-03-10
Release date:2017-06-07
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.91 Å)
Cite:The Structure of the Guanidine-II Riboswitch.
Cell Chem Biol, 24, 2017
3L74
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BU of 3l74 by Molmil
Cytochrome BC1 complex from chicken with famoxadone bound
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, AZIDE ION, CARDIOLIPIN, ...
Authors:Huang, L, Berry, E.A.
Deposit date:2009-12-28
Release date:2010-02-02
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:Famoxadone and related inhibitors bind like methoxy acrylate inhibitors in the Qo site of the BC1 compl and fix the rieske iron-sulfur protein in a positio close to but distinct from that seen with stigmatellin and other "DISTAL" Qo inhibitors.
To be Published
6TB7
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BU of 6tb7 by Molmil
Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine monophosphate (AMP)
Descriptor: ADENOSINE MONOPHOSPHATE, BROMIDE ION, MAGNESIUM ION, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2019-11-01
Release date:2020-09-30
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:Structure and ligand binding of the ADP-binding domain of the NAD + riboswitch.
Rna, 26, 2020
5NDI
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BU of 5ndi by Molmil
The structure of the E.coli guanidine II riboswitch P1 stem-loop
Descriptor: GUANIDINE, RNA (5'-R(*UP*UP*UP*GP*CP*AP*GP*GP*AP*CP*GP*AP*CP*CP*UP*GP*(CBV)P*AP*AP*A)-3'), SODIUM ION
Authors:Huang, L, Wang, J, Lilley, D.M.J.
Deposit date:2017-03-08
Release date:2017-05-31
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:The Structure of the Guanidine-II Riboswitch.
Cell Chem Biol, 24, 2017
5O69
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BU of 5o69 by Molmil
The structure of the thermobifida fusca guanidine III riboswitch with agmatine.
Descriptor: AGMATINE, MAGNESIUM ION, RNA (37-MER), ...
Authors:Huang, L, Wang, J, Lilley, D.M.J.
Deposit date:2017-06-06
Release date:2017-10-18
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.319 Å)
Cite:Structure of the Guanidine III Riboswitch.
Cell Chem Biol, 24, 2017
2A06
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BU of 2a06 by Molmil
Bovine cytochrome bc1 complex with stigmatellin bound
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, AZIDE ION, CARDIOLIPIN, ...
Authors:Huang, L.S, Cobessi, D, Tung, E.Y, Berry, E.A.
Deposit date:2005-06-16
Release date:2005-06-21
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Binding of the Respiratory Chain Inhibitor Antimycin to the Mitochondrial bc(1) Complex: A New Crystal Structure Reveals an Altered Intramolecular Hydrogen-bonding Pattern.
J.Mol.Biol., 351, 2005
5NEO
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BU of 5neo by Molmil
The structure of the G. violaceus guanidine II riboswitch P1 stem-loop
Descriptor: AMMONIUM ION, RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3'), SODIUM ION, ...
Authors:Huang, L, Wang, J, Lilley, D.M.J.
Deposit date:2017-03-11
Release date:2017-05-31
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:The Structure of the Guanidine-II Riboswitch.
Cell Chem Biol, 24, 2017
6TFG
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BU of 6tfg by Molmil
Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine 3-phosphate 5-phosphosulfate (APPS)
Descriptor: 3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE, Chains: A, MAGNESIUM ION, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2019-11-14
Release date:2020-09-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structure and ligand binding of the ADP-binding domain of the NAD+ riboswitch.
Rna, 26, 2020
6TFH
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BU of 6tfh by Molmil
Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Nicotinamide adenine dinucleotide, reduced (NADH); soaking with Manganese(II) (Mn2+)
Descriptor: Chains: A, MANGANESE (II) ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2019-11-14
Release date:2020-09-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Structure and ligand binding of the ADP-binding domain of the NAD+ riboswitch.
Rna, 26, 2020
5NEP
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BU of 5nep by Molmil
The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with methylguanidine
Descriptor: 1-METHYLGUANIDINE, RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3'), SODIUM ION, ...
Authors:Huang, L, Wang, J, Lilley, D.M.J.
Deposit date:2017-03-11
Release date:2017-05-31
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The Structure of the Guanidine-II Riboswitch.
Cell Chem Biol, 24, 2017
3TGU
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BU of 3tgu by Molmil
Cytochrome bc1 complex from chicken with pfvs-designed moa inhibitor bound
Descriptor: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, CARDIOLIPIN, Coenzyme Q10, ...
Authors:Huang, L.-S, Yang, G.-F, Berry, E.A.
Deposit date:2011-08-17
Release date:2012-07-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Computational discovery of picomolar Q(o) site inhibitors of cytochrome bc1 complex.
J.Am.Chem.Soc., 134, 2012
5NY8
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BU of 5ny8 by Molmil
The structure of the thermobifida fusca guanidine III riboswitch with aminoguanidine
Descriptor: AMINOGUANIDINE, MAGNESIUM ION, RNA (41-MER), ...
Authors:Huang, L, Wang, J, Lilley, D.M.J.
Deposit date:2017-05-11
Release date:2017-10-18
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Structure of the Guanidine III Riboswitch.
Cell Chem Biol, 24, 2017
5NZ6
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BU of 5nz6 by Molmil
The structure of the thermobifida fusca guanidine III riboswitch with guanidine in space group P3212.
Descriptor: GUANIDINE, RNA (41-MER)
Authors:Huang, L, Wang, J, Lilley, D.M.J.
Deposit date:2017-05-12
Release date:2017-10-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.94 Å)
Cite:Structure of the Guanidine III Riboswitch.
Cell Chem Biol, 24, 2017
5NOM
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BU of 5nom by Molmil
The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with guanidine
Descriptor: GUANIDINE, RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3'), SODIUM ION, ...
Authors:Huang, L, Wang, J, Lilley, D.M.J.
Deposit date:2017-04-12
Release date:2017-05-31
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:The Structure of the Guanidine-II Riboswitch.
Cell Chem Biol, 24, 2017
6TF0
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BU of 6tf0 by Molmil
Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Nicotinamide adenine dinucleotide, reduced (NADH)
Descriptor: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Chains: A, MAGNESIUM ION, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2019-11-12
Release date:2020-09-23
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure and ligand binding of the ADP-binding domain of the NAD+ riboswitch.
Rna, 26, 2020
6TFE
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BU of 6tfe by Molmil
Crystal structure of the ADP-binding domain of the NAD+ riboswitch with N6-Methyl-adenosine-5'-triphosphate (m6ATP)
Descriptor: BROMIDE ION, Chains: A, MAGNESIUM ION, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2019-11-14
Release date:2020-09-23
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure and ligand binding of the ADP-binding domain of the NAD+ riboswitch.
Rna, 26, 2020
5O62
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BU of 5o62 by Molmil
The structure of the thermobifida fusca guanidine III riboswitch with 1-Ethylguanidine.
Descriptor: MAGNESIUM ION, N-ETHYLGUANIDINE, RNA (41-MER)
Authors:Huang, L, Wang, J, Lilley, D.M.J.
Deposit date:2017-06-04
Release date:2017-10-18
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.119 Å)
Cite:Structure of the Guanidine III Riboswitch.
Cell Chem Biol, 24, 2017
5NEX
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BU of 5nex by Molmil
The structure of the G. violaceus guanidine II riboswitch P1 stem-loop with agmatine
Descriptor: AGMATINE, RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3'), SODIUM ION
Authors:Huang, L, Wang, J, Lilley, D.M.J.
Deposit date:2017-03-13
Release date:2017-05-31
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:The Structure of the Guanidine-II Riboswitch.
Cell Chem Biol, 24, 2017
3OWZ
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BU of 3owz by Molmil
Crystal structure of glycine riboswitch, soaked in Iridium
Descriptor: Domain II of glycine riboswitch, GLYCINE, IRIDIUM HEXAMMINE ION, ...
Authors:Huang, L, Serganov, A, Patel, D.J.
Deposit date:2010-09-20
Release date:2010-12-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.949 Å)
Cite:Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch.
Mol.Cell, 40, 2010
5FKF
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BU of 5fkf by Molmil
SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UC
Descriptor: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2015-10-15
Release date:2016-05-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res., 44, 2016
5FKD
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BU of 5fkd by Molmil
SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UA
Descriptor: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2015-10-15
Release date:2016-05-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3 Å)
Cite:A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res., 44, 2016
5FJC
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BU of 5fjc by Molmil
SAM-I riboswitch bearing the H. marismortui Kt-7 variant C-2bU
Descriptor: BARIUM ION, MAGNESIUM ION, POTASSIUM ION, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2015-10-07
Release date:2016-05-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res., 44, 2016

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