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PDB: 393 results

3J9D
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Atomic structure of a non-enveloped virus reveals pH sensors for a coordinated process of cell entry
Descriptor: Outer capsid protein VP2, ZINC ION
Authors:Zhang, X, Patel, A, Celma, C, Roy, P, Zhou, Z.H.
Deposit date:2015-01-09
Release date:2015-12-09
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Atomic model of a nonenveloped virus reveals pH sensors for a coordinated process of cell entry.
Nat.Struct.Mol.Biol., 23, 2016
3JB3
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BU of 3jb3 by Molmil
Atomic model of cytoplasmic polyhedrosis virus with SAM, GTP and ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Capsid protein VP1, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Yu, X.K, Jiang, J.S, Sun, J.C, Zhou, Z.H.
Deposit date:2015-07-06
Release date:2015-08-12
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:A putative ATPase mediates RNA transcription and capping in a dsRNA virus.
Elife, 4, 2015
3J2P
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BU of 3j2p by Molmil
CryoEM structure of Dengue virus envelope protein heterotetramer
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope protein E, ...
Authors:Zhang, X, Ge, P, Yu, X, Brannan, J.M, Bi, G, Zhang, Q, Schein, S, Zhou, Z.H.
Deposit date:2012-11-30
Release date:2012-12-19
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Cryo-EM structure of the mature dengue virus at 3.5-A resolution.
Nat.Struct.Mol.Biol., 20, 2012
3J9C
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BU of 3j9c by Molmil
CryoEM single particle reconstruction of anthrax toxin protective antigen pore at 2.9 Angstrom resolution
Descriptor: CALCIUM ION, Protective antigen PA-63
Authors:Jiang, J, Pentelute, B.L, Collier, R.J, Zhou, Z.H.
Deposit date:2014-12-25
Release date:2015-03-11
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Atomic structure of anthrax protective antigen pore elucidates toxin translocation.
Nature, 521, 2015
3J9E
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BU of 3j9e by Molmil
Atomic structure of a non-enveloped virus reveals pH sensors for a coordinated process of cell entry
Descriptor: VP5
Authors:Zhang, X, Patel, A, Celma, C, Roy, P, Zhou, Z.H.
Deposit date:2015-01-10
Release date:2015-12-09
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Atomic model of a nonenveloped virus reveals pH sensors for a coordinated process of cell entry.
Nat.Struct.Mol.Biol., 23, 2016
6U9E
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BU of 6u9e by Molmil
Structure of PdpA-VgrG Complex, Lidless
Descriptor: PdpA, VgrG
Authors:Yang, X, Clemens, D.L, Lee, B.-Y, Cui, Y, Zhou, Z.H, Horwitz, M.A.
Deposit date:2019-09-08
Release date:2019-10-23
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.21 Å)
Cite:Atomic Structure of the Francisella T6SS Central Spike Reveals a Unique alpha-Helical Lid and a Putative Cargo.
Structure, 27, 2019
6U9G
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BU of 6u9g by Molmil
Structure of Francisella PdpA-VgrG Complex, half-lidded
Descriptor: PdpA, VgrG
Authors:Yang, X, Clemens, D.L, Lee, B.-Y, Cui, Y, Zhou, Z.H, Horwitz, M.A.
Deposit date:2019-09-08
Release date:2019-10-23
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.98 Å)
Cite:Atomic Structure of the Francisella T6SS Central Spike Reveals a Unique alpha-Helical Lid and a Putative Cargo.
Structure, 27, 2019
6TY9
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BU of 6ty9 by Molmil
In situ structure of BmCPV RNA dependent RNA polymerase at initiation state
Descriptor: MAGNESIUM ION, Non-template RNA (5'-D(*(GTA))-R(P*GP*UP*AP*AP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'), RNA-dependent RNA Polymerase, ...
Authors:Cui, Y.X, Zhang, Y.N, Sun, J.C, Zhou, Z.H.
Deposit date:2019-08-08
Release date:2019-11-20
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Conservative transcription in three steps visualized in a double-stranded RNA virus.
Nat.Struct.Mol.Biol., 26, 2019
6TZ1
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BU of 6tz1 by Molmil
In situ structure of BmCPV RNA-dependent RNA polymerase at early-elongation state
Descriptor: Non-template RNA (5'-D(*(GTA))-R(P*GP*UP*A)-3'), RNA-dependent RNA Polymerase, Template RNA (5'-R(P*AP*GP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'), ...
Authors:Cui, Y.X, Zhang, Y.N, Sun, J.C, Zhou, Z.H.
Deposit date:2019-08-09
Release date:2019-11-20
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Conservative transcription in three steps visualized in a double-stranded RNA virus.
Nat.Struct.Mol.Biol., 26, 2019
6TY8
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In situ structure of BmCPV RNA dependent RNA polymerase at quiescent state
Descriptor: P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATE, RNA-dependent RNA Polymerase, Viral structural protein 4
Authors:Cui, Y.X, Zhang, Y.N, Sun, J.C, Zhou, Z.H.
Deposit date:2019-08-08
Release date:2019-11-20
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Conservative transcription in three steps visualized in a double-stranded RNA virus.
Nat.Struct.Mol.Biol., 26, 2019
6TZ2
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BU of 6tz2 by Molmil
In situ structure of BmCPV RNA-dependent RNA polymerase at elongation state
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Non-template RNA (36-MER), ...
Authors:Cui, Y.X, Zhang, Y.N, Sun, J.C, Zhou, Z.H.
Deposit date:2019-08-09
Release date:2019-11-20
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Conservative transcription in three steps visualized in a double-stranded RNA virus.
Nat.Struct.Mol.Biol., 26, 2019
8UD4
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BU of 8ud4 by Molmil
SARS-CoV-2 Nsp15 bound to poly(A/U) RNA, state 1
Descriptor: Non-structural protein 15, RNA (35-MER)
Authors:Ito, F, Yang, H, Zhou, Z.H, Chen, X.S.
Deposit date:2023-09-28
Release date:2024-04-24
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.25 Å)
Cite:Structural basis for polyuridine tract recognition by SARS-CoV-2 Nsp15.
Protein Cell, 15, 2024
8UD2
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BU of 8ud2 by Molmil
SARS-CoV-2 Nsp15, apo-form
Descriptor: Non-structural protein 15
Authors:Ito, F, Yang, H, Zhou, Z.H, Chen, X.S.
Deposit date:2023-09-28
Release date:2024-04-24
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (2.33 Å)
Cite:Structural basis for polyuridine tract recognition by SARS-CoV-2 Nsp15.
Protein Cell, 15, 2024
6U9F
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BU of 6u9f by Molmil
Structure of Francisella PdpA-VgrG Complex, Lidded
Descriptor: PdpA, VgrG
Authors:Yang, X, Clemens, D.L, Lee, B.-Y, Cui, Y.X, Horwitz, M.A, Zhou, Z.H.
Deposit date:2019-09-08
Release date:2019-10-23
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.35 Å)
Cite:Atomic Structure of the Francisella T6SS Central Spike Reveals a Unique alpha-Helical Lid and a Putative Cargo.
Structure, 27, 2019
8UD3
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BU of 8ud3 by Molmil
SARS-CoV-2 Nsp15 bound to poly(A/U) RNA, consensus form
Descriptor: Non-structural protein 15, RNA (35-MER)
Authors:Ito, F, Yang, H, Zhou, Z.H, Chen, X.S.
Deposit date:2023-09-28
Release date:2024-04-24
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (2.67 Å)
Cite:Structural basis for polyuridine tract recognition by SARS-CoV-2 Nsp15.
Protein Cell, 15, 2024
1TXC
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BU of 1txc by Molmil
Complex crystal structure of SPE16 with ANS
Descriptor: 8-ANILINO-1-NAPHTHALENE SULFONATE, pathogenesis-related class 10 protein SPE-16
Authors:Wu, F, Wei, Z, Zhou, Z, Gong, W.
Deposit date:2004-07-02
Release date:2005-10-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Complex crystal structure of SPE16 with ANS
To be Published
6TZ0
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BU of 6tz0 by Molmil
In situ structure of BmCPV RNA-dependent RNA polymerase at abortive state
Descriptor: RNA-dependent RNA Polymerase, Viral structural protein 4
Authors:Cui, Y.X, Zhang, Y.N, Sun, J.C, Zhou, Z.H.
Deposit date:2019-08-09
Release date:2019-11-20
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Conservative transcription in three steps visualized in a double-stranded RNA virus.
Nat.Struct.Mol.Biol., 26, 2019
2LY8
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BU of 2ly8 by Molmil
The budding yeast chaperone Scm3 recognizes the partially unfolded dimer of the centromere-specific Cse4/H4 histone variant
Descriptor: Budding yeast chaperone Scm3
Authors:Hong, J, Feng, H, Zhou, Z, Ghirlando, R, Bai, Y.
Deposit date:2012-09-13
Release date:2012-12-12
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Identification of Functionally Conserved Regions in the Structure of the Chaperone/CenH3/H4 Complex.
J.Mol.Biol., 425, 2013
6W2D
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BU of 6w2d by Molmil
Structures of Capsid and Capsid-Associated Tegument Complex inside the Epstein-Barr Virus
Descriptor: Capsid vertex component 1, Capsid vertex component 2, Large tegument protein deneddylase, ...
Authors:Liu, W, Cui, Y.X, Wang, C.Y, Li, Z.H, Gong, D.Y, Dai, X.H, Bi, G.Q, Sun, R, Zhou, Z.H.
Deposit date:2020-03-05
Release date:2020-07-15
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4 Å)
Cite:Structures of capsid and capsid-associated tegument complex inside the Epstein-Barr virus.
Nat Microbiol, 5, 2020
6BK8
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BU of 6bk8 by Molmil
S. cerevisiae spliceosomal post-catalytic P complex
Descriptor: GUANOSINE-5'-TRIPHOSPHATE, INOSITOL HEXAKISPHOSPHATE, Lea1, ...
Authors:Liu, S, Li, X, Zhou, Z.H, Zhao, R.
Deposit date:2017-11-07
Release date:2018-02-21
Last modified:2020-10-14
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure of the yeast spliceosomal postcatalytic P complex.
Science, 358, 2017
6W2E
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BU of 6w2e by Molmil
Structures of Capsid and Capsid-Associated Tegument Complex inside the Epstein-Barr Virus
Descriptor: Capsid vertex component 1, Capsid vertex component 2, Large tegument protein deneddylase, ...
Authors:Liu, W, Cui, Y.X, Wang, C.Y, Li, Z.H, Gong, D.Y, Dai, X.H, Bi, G.Q, Sun, R, Zhou, Z.H.
Deposit date:2020-03-05
Release date:2020-07-15
Last modified:2024-03-06
Method:ELECTRON MICROSCOPY (4.4 Å)
Cite:Structures of capsid and capsid-associated tegument complex inside the Epstein-Barr virus.
Nat Microbiol, 5, 2020
1TW0
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BU of 1tw0 by Molmil
Native crystal structure of SPE16
Descriptor: pathogenesis-related class 10 protein SPE-16
Authors:Wu, F, Wei, Z, Zhou, Z, Gong, W.
Deposit date:2004-06-30
Release date:2005-10-11
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Native crystal structure of SPE16
to be published
3IYL
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BU of 3iyl by Molmil
Atomic CryoEM Structure of a Nonenveloped Virus Suggests How Membrane Penetration Protein is Primed for Cell Entry
Descriptor: Core protein VP6, MYRISTIC ACID, Outer capsid VP4, ...
Authors:Zhang, X, Jin, L, Fang, Q, Hui, W, Zhou, Z.H.
Deposit date:2010-02-02
Release date:2010-05-12
Last modified:2018-07-18
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:3.3 A cryo-EM structure of a nonenveloped virus reveals a priming mechanism for cell entry.
Cell(Cambridge,Mass.), 141, 2010
8WLJ
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BU of 8wlj by Molmil
Cryo-EM structure of human apo VMAT2 with nanobody in an outward-facing conformation
Descriptor: Synaptic vesicular amine transporter, nanobody
Authors:Qu, Q, Wang, Y, Zhou, Z.
Deposit date:2023-09-30
Release date:2024-06-12
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Cryo-EM structure of human apo VMAT2 in an outward-facing conformation
To Be Published
8WLL
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BU of 8wll by Molmil
Cryo-EM structure of human VMAT2 Y422C, in the presence of reserpine, determined in an inward-facing conformation
Descriptor: Synaptic vesicular amine transporter, reserpine
Authors:Qu, Q, Wang, Y, Zhou, Z.
Deposit date:2023-09-30
Release date:2024-06-12
Method:ELECTRON MICROSCOPY (3.74 Å)
Cite:Cryo-EM structure of human VMAT2 Y422C, in the presence of reserpine, determined in an inward-facing conformation
To Be Published

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