1G01
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![BU of 1g01 by Molmil](/molmil-images/mine/1g01) | ALKALINE CELLULASE K CATALYTIC DOMAIN | Descriptor: | ACETIC ACID, CADMIUM ION, ENDOGLUCANASE | Authors: | Shirai, T, Ishida, H, Noda, J, Yamane, T, Ozaki, K, Hakamada, Y, Ito, S. | Deposit date: | 2000-10-05 | Release date: | 2001-08-01 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal structure of alkaline cellulase K: insight into the alkaline adaptation of an industrial enzyme. J.Mol.Biol., 310, 2001
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1G0C
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![BU of 1g0c by Molmil](/molmil-images/mine/1g0c) | ALKALINE CELLULASE K CATALYTIC DOMAIN-CELLOBIOSE COMPLEX | Descriptor: | ACETIC ACID, CADMIUM ION, ENDOGLUCANASE, ... | Authors: | Shirai, T, Ishida, H, Noda, J, Yamane, T, Ozaki, K, Hakamada, Y, Ito, S. | Deposit date: | 2000-10-05 | Release date: | 2001-08-01 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal structure of alkaline cellulase K: insight into the alkaline adaptation of an industrial enzyme. J.Mol.Biol., 310, 2001
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1C1F
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![BU of 1c1f by Molmil](/molmil-images/mine/1c1f) | LIGAND-FREE CONGERIN I | Descriptor: | PROTEIN (CONGERIN I) | Authors: | Shirai, T, Mitsuyama, C, Niwa, Y, Matsui, Y, Hotta, H, Yamane, T, Kamiya, H, Ishii, C, Ogawa, T, Muramoto, K. | Deposit date: | 1999-03-03 | Release date: | 1999-10-08 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | High-resolution structure of the conger eel galectin, congerin I, in lactose-liganded and ligand-free forms: emergence of a new structure class by accelerated evolution. Structure Fold.Des., 7, 1999
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1C1L
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![BU of 1c1l by Molmil](/molmil-images/mine/1c1l) | LACTOSE-LIGANDED CONGERIN I | Descriptor: | PROTEIN (CONGERIN I), beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | Authors: | Shirai, T, Mitsuyama, C, Niwa, Y, Matsui, Y, Hotta, H, Yamane, T, Kamiya, H, Ishii, C, Ogawa, T, Muramoto, K. | Deposit date: | 1999-03-03 | Release date: | 1999-10-08 | Last modified: | 2023-08-09 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | High-resolution structure of the conger eel galectin, congerin I, in lactose-liganded and ligand-free forms: emergence of a new structure class by accelerated evolution. Structure Fold.Des., 7, 1999
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1IS3
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![BU of 1is3 by Molmil](/molmil-images/mine/1is3) | LACTOSE AND MES-LIGANDED CONGERIN II | Descriptor: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CONGERIN II, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | Authors: | Shirai, T, Matsui, Y, Shionyu-Mitsuyama, C, Yamane, T, Kamiya, H, Ishii, C, Ogawa, T, Muramoto, K. | Deposit date: | 2001-11-12 | Release date: | 2002-09-18 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.45 Å) | Cite: | Crystal structure of a conger eel galectin (congerin II) at 1.45 A resolution: Implication for the accelerated evolution of a new ligand-binding site following gene duplication J.MOL.BIOL., 321, 2002
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1IS5
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![BU of 1is5 by Molmil](/molmil-images/mine/1is5) | Ligand free Congerin II | Descriptor: | Congerin II | Authors: | Shirai, T, Matsui, Y, Shionyu-Mitsuyama, C, Yamane, T, Kamiya, H, Ishii, C, Ogawa, T, Muramoto, K. | Deposit date: | 2001-11-12 | Release date: | 2002-09-18 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structure of a conger eel galectin (congerin II) at 1.45 A resolution: Implication for the accelerated evolution of a new ligand-binding site following gene duplication J.MOL.BIOL., 321, 2002
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1CH4
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![BU of 1ch4 by Molmil](/molmil-images/mine/1ch4) | MODULE-SUBSTITUTED CHIMERA HEMOGLOBIN BETA-ALPHA (F133V) | Descriptor: | CARBON MONOXIDE, MODULE-SUBSTITUTED CHIMERA HEMOGLOBIN BETA-ALPHA, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Shirai, T, Fujikake, M, Yamane, T, Inaba, K, Ishimori, K, Morishima, I. | Deposit date: | 1998-06-11 | Release date: | 1999-04-27 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Crystal structure of a protein with an artificial exon-shuffling, module M4-substituted chimera hemoglobin beta alpha, at 2.5 A resolution. J.Mol.Biol., 287, 1999
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1IS4
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![BU of 1is4 by Molmil](/molmil-images/mine/1is4) | LACTOSE-LIGANDED CONGERIN II | Descriptor: | CONGERIN II, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose | Authors: | Shirai, T, Matsui, Y, Shionyu-Mitsuyama, C, Yamane, T, Kamiya, H, Ishii, C, Ogawa, T, Muramoto, K. | Deposit date: | 2001-11-12 | Release date: | 2002-09-18 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal Structure of a Conger Eel Galectin (Congerin II) at 1.45 A Resolution: Implication for the Accelerated Evolution of a New Ligand-Binding Site Following Gene Duplication J.Mol.Biol., 321, 2002
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1IS6
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![BU of 1is6 by Molmil](/molmil-images/mine/1is6) | MES-Liganded Congerin II | Descriptor: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Congerin II | Authors: | Shirai, T, Matsui, Y, Shionyu-Mitsuyama, C, Yamane, T, Kamiya, H, Ishii, C, Ogawa, T, Muramoto, K. | Deposit date: | 2001-11-12 | Release date: | 2002-09-18 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Crystal structure of a conger eel galectin (congerin II) at 1.45 A resolution: Implication for the accelerated evolution of a new ligand-binding site following gene duplication J.MOL.BIOL., 321, 2002
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1WSD
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![BU of 1wsd by Molmil](/molmil-images/mine/1wsd) | Alkaline M-protease form I crystal structure | Descriptor: | CALCIUM ION, M-protease, SULFATE ION | Authors: | Shirai, T, Suzuki, A, Yamane, T, Ashida, T, Kobayashi, T, Hitomi, J, Ito, S. | Deposit date: | 2004-11-05 | Release date: | 2004-11-16 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | High-resolution crystal structure of M-protease: phylogeny aided analysis of the high-alkaline adaptation mechanism Protein Eng., 10, 1997
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2DIE
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![BU of 2die by Molmil](/molmil-images/mine/2die) | Alkaline alpha-amylase AmyK from Bacillus sp. KSM-1378 | Descriptor: | CALCIUM ION, SODIUM ION, amylase | Authors: | Shirai, T, Igarashi, K, Ozawa, T, Hagihara, H, Kobayashi, T, Ozaki, K, Ito, S. | Deposit date: | 2006-03-29 | Release date: | 2007-02-13 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Ancestral sequence evolutionary trace and crystal structure analyses of alkaline alpha-amylase from Bacillus sp. KSM-1378 to clarify the alkaline adaptation process of proteins Proteins, 66, 2007
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2ZX0
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![BU of 2zx0 by Molmil](/molmil-images/mine/2zx0) | Rhamnose-binding lectin CSL3 | Descriptor: | CSL3, GLYCEROL, PHOSPHATE ION | Authors: | Shirai, T, Watababe, Y, Lee, M, Ogawa, T, Muramoto, K. | Deposit date: | 2008-12-19 | Release date: | 2009-06-30 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structure of rhamnose-binding lectin CSL3: unique pseudo-tetrameric architecture of a pattern recognition protein J.Mol.Biol., 391, 2009
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2ZX2
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![BU of 2zx2 by Molmil](/molmil-images/mine/2zx2) | Rhamnose-binding lectin CSL3 | Descriptor: | CSL3, PHOSPHATE ION, alpha-L-rhamnopyranose | Authors: | Shirai, T, Watababe, Y, Lee, M, Ogawa, T, Muramoto, K. | Deposit date: | 2008-12-19 | Release date: | 2009-06-30 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Structure of rhamnose-binding lectin CSL3: unique pseudo-tetrameric architecture of a pattern recognition protein J.Mol.Biol., 391, 2009
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2ZX1
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![BU of 2zx1 by Molmil](/molmil-images/mine/2zx1) | Rhamnose-binding lectin CSL3 | Descriptor: | CSL3, PHOSPHATE ION | Authors: | Shirai, T, Watababe, Y, Lee, M, Ogawa, T, Muramoto, K. | Deposit date: | 2008-12-19 | Release date: | 2009-06-30 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structure of rhamnose-binding lectin CSL3: unique pseudo-tetrameric architecture of a pattern recognition protein J.Mol.Biol., 391, 2009
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2ZX4
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![BU of 2zx4 by Molmil](/molmil-images/mine/2zx4) | Rhamnose-binding lectin CSL3 | Descriptor: | CSL3, PHOSPHATE ION, alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose, ... | Authors: | Shirai, T, Watababe, Y, Lee, M, Ogawa, T, Muramoto, K. | Deposit date: | 2008-12-19 | Release date: | 2009-06-30 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Structure of rhamnose-binding lectin CSL3: unique pseudo-tetrameric architecture of a pattern recognition protein J.Mol.Biol., 391, 2009
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2ZE0
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![BU of 2ze0 by Molmil](/molmil-images/mine/2ze0) | Alpha-glucosidase GSJ | Descriptor: | Alpha-glucosidase, CALCIUM ION | Authors: | Shirai, T, Hung, V.S, Morinaka, K, Kobayashi, T, Ito, S. | Deposit date: | 2007-12-04 | Release date: | 2007-12-18 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structure of GH13 alpha-glucosidase GSJ from one of the deepest sea bacteria Proteins, 73, 2008
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2ZX3
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![BU of 2zx3 by Molmil](/molmil-images/mine/2zx3) | Rhamnose-binding lectin CSL3 | Descriptor: | CSL3, PHOSPHATE ION, alpha-D-galactopyranose-(1-6)-beta-D-glucopyranose | Authors: | Shirai, T, Watababe, Y, Lee, M, Ogawa, T, Muramoto, K. | Deposit date: | 2008-12-19 | Release date: | 2009-06-30 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Structure of rhamnose-binding lectin CSL3: unique pseudo-tetrameric architecture of a pattern recognition protein J.Mol.Biol., 391, 2009
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8HPK
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![BU of 8hpk by Molmil](/molmil-images/mine/8hpk) | Crystal structure of the bacterial oxalate transporter OxlT in an oxalate-bound occluded form | Descriptor: | Fab fragment Heavy chein, Fab fragment Light chain, OXALATE ION, ... | Authors: | Shimamura, T, Hirai, T, Yamashita, A. | Deposit date: | 2022-12-12 | Release date: | 2023-02-15 | Last modified: | 2023-04-12 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | Structure and mechanism of oxalate transporter OxlT in an oxalate-degrading bacterium in the gut microbiota. Nat Commun, 14, 2023
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8HPJ
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![BU of 8hpj by Molmil](/molmil-images/mine/8hpj) | |
1AT9
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![BU of 1at9 by Molmil](/molmil-images/mine/1at9) | STRUCTURE OF BACTERIORHODOPSIN AT 3.0 ANGSTROM DETERMINED BY ELECTRON CRYSTALLOGRAPHY | Descriptor: | BACTERIORHODOPSIN, RETINAL | Authors: | Kimura, Y, Vassylyev, D.G, Miyazawa, A, Kidera, A, Matsushima, M, Mitsuoka, K, Murata, K, Hirai, T, Fujiyoshi, Y. | Deposit date: | 1997-08-20 | Release date: | 1998-09-16 | Last modified: | 2024-06-05 | Method: | ELECTRON CRYSTALLOGRAPHY (2.8 Å) | Cite: | Surface of bacteriorhodopsin revealed by high-resolution electron crystallography. Nature, 389, 1997
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2AT9
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![BU of 2at9 by Molmil](/molmil-images/mine/2at9) | STRUCTURE OF BACTERIORHODOPSIN AT 3.0 ANGSTROM BY ELECTRON CRYSTALLOGRAPHY | Descriptor: | 3-[[3-METHYLPHOSPHONO-GLYCEROLYL]PHOSPHONYL]-[1,2-DI[2,6,10,14-TETRAMETHYL-HEXADECAN-16-YL]GLYCEROL, BACTERIORHODOPSIN, RETINAL | Authors: | Mitsuoka, K, Hirai, T, Murata, K, Miyazawa, A, Kidera, A, Kimura, Y, Fujiyoshi, Y. | Deposit date: | 1998-12-17 | Release date: | 1999-04-27 | Last modified: | 2024-06-05 | Method: | ELECTRON CRYSTALLOGRAPHY (3 Å) | Cite: | The structure of bacteriorhodopsin at 3.0 A resolution based on electron crystallography: implication of the charge distribution. J.Mol.Biol., 286, 1999
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1FQY
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![BU of 1fqy by Molmil](/molmil-images/mine/1fqy) | STRUCTURE OF AQUAPORIN-1 AT 3.8 A RESOLUTION BY ELECTRON CRYSTALLOGRAPHY | Descriptor: | AQUAPORIN-1 | Authors: | Murata, K, Mitsuoka, K, Hirai, T, Walz, T, Agre, P, Heymann, J.B, Engel, A, Fujiyoshi, Y. | Deposit date: | 2000-09-07 | Release date: | 2000-10-18 | Last modified: | 2024-04-17 | Method: | ELECTRON CRYSTALLOGRAPHY (3.8 Å) | Cite: | Structural determinants of water permeation through aquaporin-1. Nature, 407, 2000
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7DDU
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![BU of 7ddu by Molmil](/molmil-images/mine/7ddu) | Elephant seal myoglobin esMb | Descriptor: | Myoglobin, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION | Authors: | Isogai, Y, Imamura, H, Nakae, S, Sumi, T, Takahashi, K, Shirai, T. | Deposit date: | 2020-10-29 | Release date: | 2021-09-08 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Common and unique strategies of myoglobin evolution for deep-sea adaptation of diving mammals. Iscience, 24, 2021
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7DDR
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![BU of 7ddr by Molmil](/molmil-images/mine/7ddr) | Ancestral myoglobin aMbSp of Puijila Darwini relative (imidazol ligand) | Descriptor: | Ancestral myoglobin aMbSp, IMIDAZOLE, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Isogai, Y, Imamura, H, Nakae, S, Sumi, T, Takahashi, K, Shirai, T. | Deposit date: | 2020-10-29 | Release date: | 2021-09-08 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Common and unique strategies of myoglobin evolution for deep-sea adaptation of diving mammals. Iscience, 24, 2021
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7DDT
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![BU of 7ddt by Molmil](/molmil-images/mine/7ddt) | Ancestral myoglobin aMbSe of Enaliarctos relative (imidazol ligand) | Descriptor: | Ancestral myoglobin aMbSe, IMIDAZOLE, PROTOPORPHYRIN IX CONTAINING FE, ... | Authors: | Isogai, Y, Imamura, H, Nakae, S, Sumi, T, Takahashi, K, Shirai, T. | Deposit date: | 2020-10-29 | Release date: | 2021-09-08 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.9 Å) | Cite: | Common and unique strategies of myoglobin evolution for deep-sea adaptation of diving mammals. Iscience, 24, 2021
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