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PDB: 122 件
1J0M
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Crystal Structure of Bacillus sp. GL1 Xanthan Lyase that Acts on Side Chains of Xanthan
分子名称: CALCIUM ION, XANTHAN LYASE
著者Hashimoto, W, Nankai, H, Mikami, B, Murata, K.
登録日2002-11-19
公開日2003-04-01
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal Structure of Bacillus sp. GL1 Xanthan Lyase, Which Acts on the Side Chains of Xanthan.
J.Biol.Chem., 278, 2003
1J0N
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Crystal Structure of Bacillus sp. GL1 Xanthan Lyase that Acts on Side Chains of Xanthan
分子名称: 4,6-O-[(1S)-1-carboxyethylidene]-beta-D-glucopyranose, CALCIUM ION, XANTHAN LYASE
著者Hashimoto, W, Nankai, H, Mikami, B, Murata, K.
登録日2002-11-19
公開日2003-04-01
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal Structure of Bacillus sp. GL1 Xanthan Lyase, Which Acts on the Side Chains of Xanthan.
J.Biol.Chem., 278, 2003
2RGK
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Functional annotation of Escherichia coli yihS-encoded protein
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Uncharacterized sugar isomerase yihS
著者Itoh, T, Mikami, B, Hashimoto, W, Murata, K.
登録日2007-10-03
公開日2008-08-26
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of YihS in complex with D-mannose: structural annotation of Escherichia coli and Salmonella enterica yihS-encoded proteins to an aldose-ketose isomerase
J.Mol.Biol., 377, 2008
4W7I
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Crystal structure of DEH reductase A1-R' mutant
分子名称: 4-deoxy-L-erythro-5-hexoseulose uronate reductase A1-R'
著者Takase, R, Mikami, B, Kawai, S, Murata, K, Hashimoto, W.
登録日2014-08-22
公開日2014-09-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Structure-based Conversion of the Coenzyme Requirement of a Short-chain Dehydrogenase/Reductase Involved in Bacterial Alginate Metabolism.
J.Biol.Chem., 289, 2014
4W7H
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Crystal Structure of DEH Reductase A1-R Mutant
分子名称: Carbonyl reductase
著者Takase, R, Mikami, B, Kawai, S, Murata, K, Hashimoto, W.
登録日2014-08-22
公開日2014-09-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.11 Å)
主引用文献Structure-based Conversion of the Coenzyme Requirement of a Short-chain Dehydrogenase/Reductase Involved in Bacterial Alginate Metabolism.
J.Biol.Chem., 289, 2014
7YRS
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Crystal structure of Lactobacillus rhamnosus 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI complexed with MOPS
分子名称: 3[N-MORPHOLINO]PROPANE SULFONIC ACID, 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase, ZINC ION
著者Yamamoto, Y, Oiki, S, Takase, R, Mikami, B, Hashimoto, W.
登録日2022-08-10
公開日2023-08-16
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.802 Å)
主引用文献Crystal Structures of Lacticaseibacillus 4-Deoxy-L- threo- 5-hexosulose-uronate Ketol-isomerase KduI in Complex with Substrate Analogs.
J Appl Glycosci (1999), 70, 2023
2FV1
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UGL_D88N/dGlcA-GlcNAc
分子名称: 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-3)-2-acetamido-2-deoxy-alpha-D-glucopyranose, Unsaturated glucuronyl hydrolase
著者Itoh, T, Hashimoto, W, Mikami, B, Murata, K.
登録日2006-01-28
公開日2006-05-30
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.73 Å)
主引用文献Substrate recognition by unsaturated glucuronyl hydrolase from Bacillus sp. GL1
Biochem.Biophys.Res.Commun., 344, 2006
2FV0
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UGL_D88N/dGlcA-Glc-Rha-Glc
分子名称: 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-4)-beta-D-glucopyranose-(1-4)-alpha-L-rhamnopyranose-(1-3)-beta-D-glucopyranose, Unsaturated glucuronyl hydrolase
著者Itoh, T, Hashimoto, W, Mikami, B, Murata, K.
登録日2006-01-28
公開日2006-05-30
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Substrate recognition by unsaturated glucuronyl hydrolase from Bacillus sp. GL1
Biochem.Biophys.Res.Commun., 344, 2006
2GH4
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YteR/D143N/dGalA-Rha
分子名称: 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-2)-alpha-L-rhamnopyranose, Putative glycosyl hydrolase yteR
著者Itoh, T, Ochiai, A, Mikami, B, Hashimoto, W, Murata, K.
登録日2006-03-25
公開日2006-08-29
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of unsaturated rhamnogalacturonyl hydrolase complexed with substrate
Biochem.Biophys.Res.Commun., 347, 2006
2OKX
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Crystal structure of GH78 family rhamnosidase of Bacillus SP. GL1 AT 1.9 A
分子名称: CALCIUM ION, GLYCEROL, Rhamnosidase B
著者Cui, Z, Mikami, B, Hashimoto, W, Murata, K.
登録日2007-01-17
公開日2007-11-13
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structure of Glycoside Hydrolase Family 78 alpha-L-Rhamnosidase from Bacillus sp. GL1
J.Mol.Biol., 374, 2007
3VWO
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Crystal structure of peptidoglycan hydrolase mutant from Sphingomonas sp. A1
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Peptidoglycan hydrolase FlgJ
著者Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K.
登録日2012-08-30
公開日2013-09-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.802 Å)
主引用文献Crystal structure of peptidoglycan hydrolase mutant from Sphingomonas sp. A1
To be Published
3VLU
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Crystal structure of Sphingomonas sp. A1 alginate-binding protein AlgQ1 in complex with saturated trimannuronate
分子名称: AlgQ1, CALCIUM ION, beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid
著者Nishitani, Y, Maruyama, Y, Itoh, T, Mikami, B, Hashimoto, W, Murata, K.
登録日2011-12-05
公開日2012-01-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Recognition of heteropolysaccharide alginate by periplasmic solute-binding proteins of a bacterial ABC transporter
Biochemistry, 51, 2012
6A6V
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Crystal structure of the modified fructosyl peptide oxidase from Aspergillus nidulans with 7 additional mutations, in complex with FSA
分子名称: 1-S-(carboxymethyl)-1-thio-beta-D-fructopyranose, FLAVIN-ADENINE DINUCLEOTIDE, Fructosyl amine: oxygen oxidoreductase
著者Ogawa, N, Maruyama, Y, Itoh, T, Hashimoto, W, Murata, K.
登録日2018-06-29
公開日2019-05-15
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Creation of haemoglobin A1c direct oxidase from fructosyl peptide oxidase by combined structure-based site specific mutagenesis and random mutagenesis.
Sci Rep, 9, 2019
6A6R
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Crystal structure of the modified fructosyl peptide oxidase from Aspergillus nidulans, Seleno-methionine Derivative
分子名称: (4S,5S)-1,2-DITHIANE-4,5-DIOL, FLAVIN-ADENINE DINUCLEOTIDE, Fructosyl amine: oxygen oxidoreductase, ...
著者Ogawa, N, Maruyama, Y, Itoh, T, Hashimoto, W, Murata, K.
登録日2018-06-29
公開日2019-05-15
実験手法X-RAY DIFFRACTION (2.609 Å)
主引用文献Creation of haemoglobin A1c direct oxidase from fructosyl peptide oxidase by combined structure-based site specific mutagenesis and random mutagenesis.
Sci Rep, 9, 2019
7E4S
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Crystal structure of Lactobacillus rhamnosus 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI complexed with HEPES
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5-dehydro-4-deoxy-D-glucuronate isomerase, ZINC ION
著者Yamamoto, Y, Takase, R, Mikami, B, Hashimoto, W.
登録日2021-02-15
公開日2022-02-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.79 Å)
主引用文献Crystal structures of Lacticaseibacillus 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI in complex with substrate analogs
J.Appl.Glyosci., 2023
3IM0
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BU of 3im0 by Molmil
Crystal structure of Chlorella virus vAL-1 soaked in 200mM D-glucuronic acid, 10% PEG-3350, and 200mM glycine-NaOH (pH 10.0)
分子名称: VAL-1, beta-D-glucopyranuronic acid
著者Ogura, K, Yamasaki, M, Hashidume, T, Yamada, T, Mikami, B, Hashimoto, W, Murata, K.
登録日2009-08-08
公開日2009-10-20
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action
J.Biol.Chem., 284, 2009
1FP3
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CRYSTAL STRUCTURE OF N-ACYL-D-GLUCOSAMINE 2-EPIMERASE FROM PORCINE KIDNEY
分子名称: N-ACYL-D-GLUCOSAMINE 2-EPIMERASE
著者Itoh, T, Mikami, B, Maru, I, Ohta, Y, Hashimoto, W, Murata, K.
登録日2000-08-30
公開日2000-11-22
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of N-acyl-D-glucosamine 2-epimerase from porcine kidney at 2.0 A resolution.
J.Mol.Biol., 303, 2000
3K8W
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Crysatl structure of a bacterial cell-surface flagellin N20C45
分子名称: Flagellin homolog
著者Maruyama, Y, Momma, M, Hashimoto, W, Murata, K.
登録日2009-10-15
公開日2010-10-06
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of N- and C-terminal regions of flagellin
To be Published
3K3T
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E185A mutant of peptidoglycan hydrolase from Sphingomonas sp. A1
分子名称: Peptidoglycan hydrolase FlgJ, SULFATE ION
著者Maruyama, Y, Ochiai, A, Itoh, T, Mikami, B, Hashimoto, W, Murata, K.
登録日2009-10-04
公開日2010-07-14
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Mutational studies of the peptidoglycan hydrolase FlgJ of Sphingomonas sp. strain A1
J.Basic Microbiol., 50, 2010
3K8V
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Crysatl structure of a bacterial cell-surface flagellin N20C20
分子名称: Flagellin homolog
著者Maruyama, Y, Momma, M, Hashimoto, W, Murata, K.
登録日2009-10-15
公開日2010-10-06
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of N- and C-terminal regions of flagellin
To be Published
3GNE
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Crystal structure of alginate lyase vAL-1 from Chlorella virus
分子名称: CITRATE ANION, GLYCEROL, VAL-1
著者Ogura, K, Yamasaki, M, Hashidume, T, Yamada, T, Mikami, B, Hashimoto, W, Murata, K.
登録日2009-03-17
公開日2009-10-20
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action
J.Biol.Chem., 284, 2009
3VLW
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Crystal structure of Sphingomonas sp. A1 alginate-binding protein AlgQ1 in complex with mannuronate-guluronate disaccharide
分子名称: AlgQ1, CALCIUM ION, GLYCEROL, ...
著者Nishitani, Y, Maruyama, Y, Itoh, T, Mikami, B, Hashimoto, W, Murata, K.
登録日2011-12-05
公開日2012-01-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Recognition of heteropolysaccharide alginate by periplasmic solute-binding proteins of a bacterial ABC transporter
Biochemistry, 51, 2012
4MMH
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Crystal structure of heparan sulfate lyase HepC from Pedobacter heparinus
分子名称: CALCIUM ION, Heparinase III protein
著者Maruyama, Y, Nakamichi, Y, Mikami, B, Murata, K, Hashimoto, W.
登録日2013-09-09
公開日2014-01-29
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal Structure of Pedobacter heparinus Heparin Lyase Hep III with the Active Site in a Deep Cleft
Biochemistry, 53, 2014
4MMI
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Crystal structure of heparan sulfate lyase HepC mutant from Pedobacter heparinus
分子名称: CALCIUM ION, Heparinase III protein
著者Maruyama, Y, Nakamichi, Y, Mikami, B, Murata, K, Hashimoto, W.
登録日2013-09-09
公開日2014-01-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal Structure of Pedobacter heparinus Heparin Lyase Hep III with the Active Site in a Deep Cleft
Biochemistry, 53, 2014
4XLZ
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N,N'-diacetylchitobiose deacetylase (SeMet derivative) from Pyrococcus furiosus in the presence of cadmium
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CADMIUM ION, CHLORIDE ION, ...
著者Nakamura, T, Niiyama, M, Hashimoto, W, Ida, K, Uegaki, K.
登録日2015-01-14
公開日2015-06-10
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.51 Å)
主引用文献Multiple crystal forms of N,N'-diacetylchitobiose deacetylase from Pyrococcus furiosus.
Acta Crystallogr.,Sect.F, 71, 2015

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件を2024-07-17に公開中

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