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PDB: 74 件
1WKG
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Acetylornithine aminotransferase from thermus thermophilus HB8
分子名称: Acetylornithine/acetyl-lysine aminotransferase, N~2~-ACETYL-N~5~-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-ORNITHINE
著者Matsumura, M, Goto, M, Omi, R, Miyahara, I, Hirotsu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-31
公開日2005-09-27
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Acetylornithine aminotransferase from thermus thermophilus HB8
To be Published
1WKH
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Acetylornithine aminotransferase from thermus thermophilus HB8
分子名称: 4-[(1,3-DICARBOXY-PROPYLAMINO)-METHYL]-3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDINIUM, Acetylornithine/acetyl-lysine aminotransferase
著者Matsumura, M, Goto, M, Omi, R, Miyahara, I, Hirotsu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-31
公開日2005-09-27
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Acetylornithine aminotransferase from thermus thermophilus HB8
To be Published
1WTC
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Crystal Structure of S.pombe Serine Racemase complex with AMPPCP
分子名称: Hypothetical protein C320.14 in chromosome III, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ...
著者Goto, M, Miyahara, I, Hirotsu, K.
登録日2004-11-22
公開日2005-11-01
最終更新日2014-05-14
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of a homolog of mammalian serine racemase from Schizosaccharomyces pombe
J.Biol.Chem., 284, 2009
1ET0
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CRYSTAL STRUCTURE OF AMINODEOXYCHORISMATE LYASE FROM ESCHERICHIA COLI
分子名称: 4-AMINO-4-DEOXYCHORISMATE LYASE, PYRIDOXAL-5'-PHOSPHATE
著者Nakai, T, Mizutani, H, Miyahara, I, Hirotsu, K, Takeda, S, Jhee, K.H, Yoshimura, T, Esaki, N.
登録日2000-04-12
公開日2000-07-19
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Three-dimensional structure of 4-amino-4-deoxychorismate lyase from Escherichia coli.
J.Biochem.(Tokyo), 128, 2000
1KA9
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Imidazole Glycerol Phosphate Synthase
分子名称: imidazole glycerol phosphate synthase
著者Omi, R, Miyahara, I, Hirotsu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2001-11-01
公開日2002-12-04
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of imidazole glycerol phosphate synthase from Thermus thermophilus HB8: open-closed conformational change and ammonia tunneling.
J.Biochem., 132, 2002
1GEW
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CRYSTAL STRUCTURE OF HISTIDINOL-PHOSPHATE AMINOTRANSFERASE COMPLEXED WITH PYRIDOXAL 5'-PHOSPHATE
分子名称: HISTIDINOL-PHOSPHATE AMINOTRANSFERASE, PYRIDOXAL-5'-PHOSPHATE
著者Haruyama, K, Nakai, T, Miyahara, I, Hirotsu, K, Mizuguchi, H, Hayashi, H, Kagamiyama, H.
登録日2000-11-30
公開日2001-04-18
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structures of Escherichia coli histidinol-phosphate aminotransferase and its complexes with histidinol-phosphate and N-(5'-phosphopyridoxyl)-L-glutamate: double substrate recognition of the enzyme.
Biochemistry, 40, 2001
1GEY
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CRYSTAL STRUCTURE OF HISTIDINOL-PHOSPHATE AMINOTRANSFERASE COMPLEXED WITH N-(5'-PHOSPHOPYRIDOXYL)-L-GLUTAMATE
分子名称: 4-[(1,3-DICARBOXY-PROPYLAMINO)-METHYL]-3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDINIUM, HISTIDINOL-PHOSPHATE AMINOTRANSFERASE
著者Haruyama, K, Nakai, T, Miyahara, I, Hirotsu, K, Mizuguchi, H, Hayashi, H, Kagamiyama, H.
登録日2000-11-30
公開日2001-04-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structures of Escherichia coli histidinol-phosphate aminotransferase and its complexes with histidinol-phosphate and N-(5'-phosphopyridoxyl)-L-glutamate: double substrate recognition of the enzyme.
Biochemistry, 40, 2001
1GEX
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CRYSTAL STRUCTURE OF HISTIDINOL-PHOSPHATE AMINOTRANSFERASE COMPLEXED WITH HISTIDINOL-PHOSPHATE
分子名称: HISTIDINOL-PHOSPHATE AMINOTRANSFERASE, PHOSPHORIC ACID MONO-[2-AMINO-3-(3H-IMIDAZOL-4-YL)-PROPYL]ESTER, PYRIDOXAL-5'-PHOSPHATE
著者Haruyama, K, Nakai, T, Miyahara, I, Hirotsu, K, Mizuguchi, H, Hayashi, H, Kagamiyama, H.
登録日2000-11-30
公開日2001-04-18
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structures of Escherichia coli histidinol-phosphate aminotransferase and its complexes with histidinol-phosphate and N-(5'-phosphopyridoxyl)-L-glutamate: double substrate recognition of the enzyme.
Biochemistry, 40, 2001
1EVI
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THREE-DIMENSIONAL STRUCTURE OF THE PURPLE INTERMEDIATE OF PORCINE KIDNEY D-AMINO ACID OXIDASE
分子名称: 3,4-DIHYDRO-2H-PYRROLIUM-5-CARBOXYLATE, D-AMINO ACID OXIDASE, FLAVIN-ADENINE DINUCLEOTIDE
著者Mizutani, H, Miyahara, I, Hirotsu, K, Nishina, Y, Shiga, K, Setoyama, C, Miura, R.
登録日2000-04-20
公開日2000-10-23
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Three-dimensional structure of the purple intermediate of porcine kidney D-amino acid oxidase. Optimization of the oxidative half-reaction through alignment of the product with reduced flavin.
J.Biochem.(Tokyo), 128, 2000
1SPA
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ROLE OF ASP222 IN THE CATALYTIC MECHANISM OF ESCHERICHIA COLI ASPARTATE AMINOTRANSFERASE: THE AMINO ACID RESIDUE WHICH ENHANCES THE FUNCTION OF THE ENZYME-BOUND COENZYME PYRIDOXAL 5'-PHOSPHATE
分子名称: ASPARTATE AMINOTRANSFERASE, N-METHYL-4-DEOXY-4-AMINO-PYRIDOXAL-5-PHOSPHATE
著者Hinoue, Y, Yano, T, Metzler, D.E, Miyahara, I, Hirotsu, K, Kagamiyama, H.
登録日1993-01-26
公開日1993-10-31
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Role of Asp222 in the catalytic mechanism of Escherichia coli aspartate aminotransferase: the amino acid residue which enhances the function of the enzyme-bound coenzyme pyridoxal 5'-phosphate.
Biochemistry, 31, 1992
2DKJ
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Crystal Structure of T.th.HB8 Serine Hydroxymethyltransferase
分子名称: PYRIDOXAL-5'-PHOSPHATE, SULFATE ION, serine hydroxymethyltransferase
著者Kai, K, Goto, M, Miyahara, I, Hirotsu, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-04-11
公開日2007-04-24
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Crystal Structure of T.th.HB8 Serine Hydroxymethyltransferase
To be Published
1VE9
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Porcine kidney D-amino acid oxidase
分子名称: BENZOIC ACID, D-amino acid oxidase, FLAVIN-ADENINE DINUCLEOTIDE
著者Mizutani, H, Miyahara, I, Hirotsu, K, Nishina, Y, Shiga, K, Setoyama, C, Miura, R.
登録日2004-03-29
公開日2004-04-13
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Three-dimensional structure of porcine kidney D-amino acid oxidase at 3.0 A resolution.
J.Biochem., 120, 1996
3X0R
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DP ribose pyrophosphatase from Thermus thermophilus HB8 in E'-state at reaction time of 30 min
分子名称: ADP-ribose pyrophosphatase, GLYCEROL, MANGANESE (II) ION, ...
著者Furuike, Y, Akita, Y, Miyahara, I, Kamiya, N.
登録日2014-10-17
公開日2016-04-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献ADP-Ribose Pyrophosphatase Reaction in Crystalline State Conducted by Consecutive Binding of Two Manganese(II) Ions as Cofactors
Biochemistry, 55, 2016
3X0O
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ADP ribose pyrophosphatase from Thermus thermophilus HB8 in ESMM-state at reaction time of 10 min
分子名称: ADP-ribose pyrophosphatase, GLYCEROL, MANGANESE (II) ION, ...
著者Furuike, Y, Akita, Y, Miyahara, I, Kamiya, N.
登録日2014-10-17
公開日2016-04-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.09 Å)
主引用文献ADP-Ribose Pyrophosphatase Reaction in Crystalline State Conducted by Consecutive Binding of Two Manganese(II) Ions as Cofactors
Biochemistry, 55, 2016
3X0J
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ADP ribose pyrophosphatase from Thermus thermophilus HB8 in apo state at 0.92 angstrom resolution
分子名称: ADP-ribose pyrophosphatase, GLYCEROL, SULFATE ION
著者Furuike, Y, Akita, Y, Miyahara, I, Kamiya, N.
登録日2014-10-16
公開日2016-04-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (0.92 Å)
主引用文献ADP-Ribose Pyrophosphatase Reaction in Crystalline State Conducted by Consecutive Binding of Two Manganese(II) Ions as Cofactors
Biochemistry, 55, 2016
3X0S
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ADP ribose pyrophosphatase from Thermus thermophilus HB8 in E'-state at reaction time of 50 min
分子名称: ADP-ribose pyrophosphatase, GLYCEROL, MANGANESE (II) ION, ...
著者Furuike, Y, Akita, Y, Miyahara, I, Kamiya, N.
登録日2014-10-17
公開日2016-04-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献ADP-Ribose Pyrophosphatase Reaction in Crystalline State Conducted by Consecutive Binding of Two Manganese(II) Ions as Cofactors
Biochemistry, 55, 2016
3X0K
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ADP ribose pyrophosphatase from Thermus thermophilus HB8 in ES-state at 0.97 angstrom resolution
分子名称: ADP-ribose pyrophosphatase, GLYCEROL, [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE
著者Furuike, Y, Akita, Y, Miyahara, I, Kamiya, N.
登録日2014-10-16
公開日2016-04-27
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (0.97 Å)
主引用文献ADP-Ribose Pyrophosphatase Reaction in Crystalline State Conducted by Consecutive Binding of Two Manganese(II) Ions as Cofactors
Biochemistry, 55, 2016
3X0I
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ADP ribose pyrophosphatase in apo state at 0.91 angstrom resolution
分子名称: ADP-ribose pyrophosphatase, GLYCEROL, SULFATE ION
著者Furuike, Y, Akita, Y, Miyahara, I, Kamiya, N.
登録日2014-10-16
公開日2016-04-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (0.91 Å)
主引用文献ADP-Ribose Pyrophosphatase Reaction in Crystalline State Conducted by Consecutive Binding of Two Manganese(II) Ions as Cofactors
Biochemistry, 55, 2016
3X0M
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ADP ribose pyrophosphatase from Thermus thermophilus HB8 in ESM-state at reaction time of 3 min
分子名称: ADP-ribose pyrophosphatase, GLYCEROL, MANGANESE (II) ION, ...
著者Furuike, Y, Akita, Y, Miyahara, I, Kamiya, N.
登録日2014-10-17
公開日2016-04-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献ADP-Ribose Pyrophosphatase Reaction in Crystalline State Conducted by Consecutive Binding of Two Manganese(II) Ions as Cofactors
Biochemistry, 55, 2016
3X0N
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ADP ribose pyrophosphatase from Thermus thermophilus HB8 in ESM-state at reaction time of 6 min
分子名称: ADP-ribose pyrophosphatase, GLYCEROL, MANGANESE (II) ION, ...
著者Furuike, Y, Akita, Y, Miyahara, I, Kamiya, N.
登録日2014-10-17
公開日2016-04-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.12 Å)
主引用文献ADP-Ribose Pyrophosphatase Reaction in Crystalline State Conducted by Consecutive Binding of Two Manganese(II) Ions as Cofactors
Biochemistry, 55, 2016
3X0P
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ADP ribose pyrophosphatase from Thermus thermophilus HB8 in ESMM-state at reaction time of 15 min
分子名称: ADP-ribose pyrophosphatase, GLYCEROL, MANGANESE (II) ION, ...
著者Furuike, Y, Akita, Y, Miyahara, I, Kamiya, N.
登録日2014-10-17
公開日2016-04-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.22 Å)
主引用文献ADP-Ribose Pyrophosphatase Reaction in Crystalline State Conducted by Consecutive Binding of Two Manganese(II) Ions as Cofactors
Biochemistry, 55, 2016
3X0L
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ADP ribose pyrophosphatase from Thermus thermophilus HB8 in ES-state at 1.00 angstrom resolution
分子名称: ADP-ribose pyrophosphatase, [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE
著者Furuike, Y, Akita, Y, Miyahara, I, Kamiya, N.
登録日2014-10-17
公開日2016-04-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献ADP-Ribose Pyrophosphatase Reaction in Crystalline State Conducted by Consecutive Binding of Two Manganese(II) Ions as Cofactors
Biochemistry, 55, 2016
3X0Q
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ADP ribose pyrophosphatase from Thermus thermophilus HB8 in ESMM-state at reaction time of 20 min
分子名称: ADP-ribose pyrophosphatase, GLYCEROL, MANGANESE (II) ION, ...
著者Furuike, Y, Akita, Y, Miyahara, I, Kamiya, N.
登録日2014-10-17
公開日2016-04-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.14 Å)
主引用文献ADP-Ribose Pyrophosphatase Reaction in Crystalline State Conducted by Consecutive Binding of Two Manganese(II) Ions as Cofactors
Biochemistry, 55, 2016
3A57
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Crystal structure of Thermostable Direct Hemolysin
分子名称: Thermostable direct hemolysin 2
著者Hashimoto, H, Yanagihara, I, Nakahira, K, Hamada, D, Ikegami, T, Mayanagi, K, Kaieda, S, Fukui, T, Ohnishi, K, Kajiyama, S, Yamane, T, Ikeguchi, M, Honda, T, Shimizu, T, Sato, M.
登録日2009-08-03
公開日2010-03-31
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structure and functional characterization of Vibrio parahaemolyticus thermostable direct hemolysin
J.Biol.Chem., 285, 2010
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