Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 46 results

3LHS
DownloadVisualize
BU of 3lhs by Molmil
Open Conformation of HtsA Complexed with Staphyloferrin A
Descriptor: (2R)-2-(2-{[(1R)-1-carboxy-4-{[(3S)-3,4-dicarboxy-3-hydroxybutanoyl]amino}butyl]amino}-2-oxoethyl)-2-hydroxybutanedioic acid, FE (III) ION, Ferrichrome ABC transporter lipoprotein, ...
Authors:Grigg, J.C, Murphy, M.E.P.
Deposit date:2010-01-23
Release date:2010-02-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:The Staphylococcus aureus siderophore receptor HtsA undergoes localized conformational changes to enclose staphyloferrin A in an arginine-rich binding pocket.
J.Biol.Chem., 285, 2010
3VEF
DownloadVisualize
BU of 3vef by Molmil
Rhodococcus jostii RHA1 DypB N246H variant in complex with heme
Descriptor: CHLORIDE ION, DypB, PROTOPORPHYRIN IX CONTAINING FE
Authors:Grigg, J.C, Singh, R, Armstrong, Z, Eltis, L.D, Murphy, M.E.P.
Deposit date:2012-01-07
Release date:2012-01-18
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.64 Å)
Cite:Distal heme pocket residues of B-type dye-decolorizing peroxidase: arginine but not aspartate is essential for peroxidase activity.
J.Biol.Chem., 287, 2012
3VEG
DownloadVisualize
BU of 3veg by Molmil
Rhodococcus jostii RHA1 DypB R244L variant in complex with heme
Descriptor: CHLORIDE ION, DypB, PROTOPORPHYRIN IX CONTAINING FE
Authors:Grigg, J.C, Singh, R, Armstrong, Z, Eltis, L.D, Murphy, M.E.P.
Deposit date:2012-01-07
Release date:2012-01-18
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Distal heme pocket residues of B-type dye-decolorizing peroxidase: arginine but not aspartate is essential for peroxidase activity.
J.Biol.Chem., 287, 2012
3VED
DownloadVisualize
BU of 3ved by Molmil
Rhodococcus jostii RHA1 DypB D153H variant in complex with heme
Descriptor: CHLORIDE ION, DypB, GLYCEROL, ...
Authors:Grigg, J.C, Singh, R, Armstrong, Z, Eltis, L.D, Murphy, M.E.P.
Deposit date:2012-01-07
Release date:2012-01-18
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Distal heme pocket residues of B-type dye-decolorizing peroxidase: arginine but not aspartate is essential for peroxidase activity.
J.Biol.Chem., 287, 2012
3VEE
DownloadVisualize
BU of 3vee by Molmil
Rhodococcus jostii RHA1 DypB N246A variant in complex with heme
Descriptor: CHLORIDE ION, DypB, FORMIC ACID, ...
Authors:Grigg, J.C, Singh, R, Armstrong, Z, Eltis, L.D, Murphy, M.E.P.
Deposit date:2012-01-07
Release date:2012-01-18
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Distal heme pocket residues of B-type dye-decolorizing peroxidase: arginine but not aspartate is essential for peroxidase activity.
J.Biol.Chem., 287, 2012
3VEC
DownloadVisualize
BU of 3vec by Molmil
Rhodococcus jostii RHA1 DypB D153A variant in complex with heme
Descriptor: CHLORIDE ION, DypB, GLYCEROL, ...
Authors:Grigg, J.C, Singh, R, Armstrong, Z, Eltis, L.D, Murphy, M.E.P.
Deposit date:2012-01-07
Release date:2012-01-18
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Distal heme pocket residues of B-type dye-decolorizing peroxidase: arginine but not aspartate is essential for peroxidase activity.
J.Biol.Chem., 287, 2012
6C27
DownloadVisualize
BU of 6c27 by Molmil
SAM-III riboswitch ON-state
Descriptor: COBALT HEXAMMINE(III), SAM-III riboswitch
Authors:Grigg, J.C, Price, I.R, Ke, A.
Deposit date:2018-01-07
Release date:2019-01-09
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (3.601 Å)
Cite:Evidence for two-tiered conformation selection in the SAM-III riboswitch
To Be Published
3LI2
DownloadVisualize
BU of 3li2 by Molmil
Closed Conformation of HtsA Complexed with Staphyloferrin A
Descriptor: (2R)-2-(2-{[(1R)-1-carboxy-4-{[(3S)-3,4-dicarboxy-3-hydroxybutanoyl]amino}butyl]amino}-2-oxoethyl)-2-hydroxybutanedioic acid, ACETATE ION, FE (III) ION, ...
Authors:Grigg, J.C, Murphy, M.E.P.
Deposit date:2010-01-23
Release date:2010-02-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The Staphylococcus aureus siderophore receptor HtsA undergoes localized conformational changes to enclose staphyloferrin A in an arginine-rich binding pocket.
J.Biol.Chem., 285, 2010
7UQ6
DownloadVisualize
BU of 7uq6 by Molmil
tRNA T-box antiterminator fusion, construct #4
Descriptor: BARIUM ION, POTASSIUM ION, RNA (86-MER)
Authors:Grigg, J.C, Price, I.R, Ke, A.
Deposit date:2022-04-19
Release date:2022-06-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.951 Å)
Cite:tRNA Fusion to Streamline RNA Structure Determination: Case Studies in Probing Aminoacyl-tRNA Sensing Mechanisms by the T-Box Riboswitch
Crystals, 12, 2022
3EIW
DownloadVisualize
BU of 3eiw by Molmil
Crystal structure of Staphylococcus aureus lipoprotein, HtsA
Descriptor: CHLORIDE ION, HtsA protein
Authors:Grigg, J.C, Murphy, M.E.P.
Deposit date:2008-09-17
Release date:2009-05-26
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Characterization of staphyloferrin A biosynthetic and transport mutants in Staphylococcus aureus.
Mol.Microbiol., 72, 2009
3EIX
DownloadVisualize
BU of 3eix by Molmil
Crystal structure of selenomethionine labelled Staphylococcus aureus lipoprotein, HtsA
Descriptor: CHLORIDE ION, HtsA protein
Authors:Grigg, J.C, Murphy, M.E.P.
Deposit date:2008-09-17
Release date:2009-05-26
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Characterization of staphyloferrin A biosynthetic and transport mutants in Staphylococcus aureus.
Mol.Microbiol., 72, 2009
4HOV
DownloadVisualize
BU of 4hov by Molmil
DypB N246A in complex with manganese
Descriptor: CHLORIDE ION, DypB, FORMIC ACID, ...
Authors:Grigg, J.C, Singh, R, Eltis, L.D, Murphy, M.E.P.
Deposit date:2012-10-22
Release date:2013-01-16
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Improved Manganese-Oxidizing Activity of DypB, a Peroxidase from a Lignolytic Bacterium.
Acs Chem.Biol., 8, 2013
4JRC
DownloadVisualize
BU of 4jrc by Molmil
Distal Stem I region from G. kaustophilus glyQS T box RNA
Descriptor: Distal Stem I region of the glyQS T box leader RNA, MAGNESIUM ION
Authors:Grigg, J.C, Ke, A.
Deposit date:2013-03-21
Release date:2013-04-24
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.673 Å)
Cite:T box RNA decodes both the information content and geometry of tRNA to affect gene expression.
Proc.Natl.Acad.Sci.USA, 110, 2013
2ITE
DownloadVisualize
BU of 2ite by Molmil
Crystal structure of the IsdA NEAT domain from Staphylococcus aureus
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, Iron-regulated surface determinant protein A
Authors:Grigg, J.C, Vermeiren, C.L, Heinrichs, D.E, Murphy, M.E.
Deposit date:2006-10-19
Release date:2006-12-26
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Haem recognition by a Staphylococcus aureus NEAT domain.
Mol.Microbiol., 63, 2007
2ITF
DownloadVisualize
BU of 2itf by Molmil
Crystal structure IsdA NEAT domain from Staphylococcus aureus with heme bound
Descriptor: Iron-regulated surface determinant protein A, PROTOPORPHYRIN IX CONTAINING FE
Authors:Grigg, J.C, Vermeiren, C.L, Heinrichs, D.E, Murphy, M.E.
Deposit date:2006-10-19
Release date:2006-12-26
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Haem recognition by a Staphylococcus aureus NEAT domain.
Mol.Microbiol., 63, 2007
3MWG
DownloadVisualize
BU of 3mwg by Molmil
Crystal structure of Staphylococcus aureus SirA
Descriptor: Iron-regulated ABC transporter siderophore-binding protein SirA
Authors:Grigg, J.C, Murphy, M.E.P.
Deposit date:2010-05-05
Release date:2010-09-01
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Staphylococcus aureus SirA specificity for staphyloferrin B is driven by localized conformational change
To be Published
3MWF
DownloadVisualize
BU of 3mwf by Molmil
Crystal structure of Staphylococcus aureus SirA complexed with staphyloferrin B
Descriptor: 5-[(2-{[(3S)-5-{[(2S)-2-amino-2-carboxyethyl]amino}-3-carboxy-3-hydroxy-5-oxopentanoyl]amino}ethyl)amino]-2,5-dioxopentanoic acid, FE (III) ION, Iron-regulated ABC transporter siderophore-binding protein SirA
Authors:Grigg, J.C, Murphy, M.E.P.
Deposit date:2010-05-05
Release date:2010-09-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Staphylococcus aureus SirA specificity for staphyloferrin B is driven by localized conformational change
To be Published
3QNS
DownloadVisualize
BU of 3qns by Molmil
DyPB from Rhodococcus jostii RHA1, crystal form 2
Descriptor: DyP Peroxidase, GLYCEROL, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Grigg, J.C, Roberts, J.N, Singh, R, Eltis, L.D, Murphy, M.E.P.
Deposit date:2011-02-09
Release date:2011-04-27
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Characterization of dye-decolorizing peroxidases from Rhodococcus jostii RHA1.
Biochemistry, 50, 2011
2Q8Q
DownloadVisualize
BU of 2q8q by Molmil
Crystal Structure of S. aureus IsdE complexed with heme
Descriptor: Iron-regulated surface determinant E, PROTOPORPHYRIN IX CONTAINING FE
Authors:Grigg, J.C, Murphy, M.E.
Deposit date:2007-06-11
Release date:2007-07-31
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Heme Coordination by Staphylococcus aureus IsdE.
J.Biol.Chem., 282, 2007
2Q8P
DownloadVisualize
BU of 2q8p by Molmil
Crystal Structure of selenomethionine labelled S. aureus IsdE complexed with heme
Descriptor: Iron-regulated surface determinant E, PROTOPORPHYRIN IX CONTAINING FE
Authors:Grigg, J.C, Murphy, M.E.
Deposit date:2007-06-11
Release date:2007-07-31
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Heme Coordination by Staphylococcus aureus IsdE.
J.Biol.Chem., 282, 2007
3BDG
DownloadVisualize
BU of 3bdg by Molmil
Crystal structure of wild-type/T155V mixed dimer of E. coli alkaline phosphatase
Descriptor: Alkaline phosphatase, SULFATE ION
Authors:Grigg, J.C, Murphy, M.E.
Deposit date:2007-11-14
Release date:2008-11-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The Active-Site Trimetallic Cluster of Alkaline Phosphatase is Lost Upon Isosteric Mutation at the Mg2+-Coordinating Residue Threonine-155
To be Published
3BDF
DownloadVisualize
BU of 3bdf by Molmil
Crystal structure of metal-free E. coli alkaline phosphatase (T155V)
Descriptor: Alkaline phosphatase, SULFATE ION
Authors:Grigg, J.C, Murphy, M.E.
Deposit date:2007-11-14
Release date:2008-11-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The Active-Site Trimetallic Cluster of Alkaline Phosphatase is Lost Upon Isosteric Mutation at the Mg2+-Coordinating Residue Threonine-155
To be Published
3BDH
DownloadVisualize
BU of 3bdh by Molmil
Crystal structure of zinc-deficient wild-type E. coli alkaline phosphatase
Descriptor: Alkaline phosphatase, MAGNESIUM ION
Authors:Grigg, J.C, Murphy, M.E.
Deposit date:2007-11-14
Release date:2008-11-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The Active-Site Trimetallic Cluster of Alkaline Phosphatase is Lost Upon Isosteric Mutation at the Mg2+-Coordinating Residue Threonine-155
To be Published
5D84
DownloadVisualize
BU of 5d84 by Molmil
Staphyloferrin B precursor biosynthetic enzyme SbnA bound to PLP
Descriptor: MAGNESIUM ION, PYRIDOXAL-5'-PHOSPHATE, Probable siderophore biosynthesis protein SbnA
Authors:Grigg, J.C, Kobylarz, M.J, Liu, Y, Lee, M.S.F, Heinrichs, D.E, Murphy, M.E.P.
Deposit date:2015-08-15
Release date:2016-02-03
Last modified:2020-01-08
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Deciphering the Substrate Specificity of SbnA, the Enzyme Catalyzing the First Step in Staphyloferrin B Biosynthesis.
Biochemistry, 55, 2016
4MGN
DownloadVisualize
BU of 4mgn by Molmil
Co-crystal structure of the G. kaustophilus glyQS T box riboswitch Stem I in complex with tRNA
Descriptor: MAGNESIUM ION, glyQS T box riboswitch, tRNA-glycine
Authors:Grigg, J.C, Ke, A.
Deposit date:2013-08-28
Release date:2013-10-23
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural Determinants for Geometry and Information Decoding of tRNA by T Box Leader RNA.
Structure, 21, 2013

 

12>

222036

PDB entries from 2024-07-03

PDB statisticsPDBj update infoContact PDBjnumon