PDB Search results for query - Protein Data Bank Japan

PDB: 121 results

Crystal Structure of the Domain-Swapped Dimer K40L:Q108K:Y60W mutant of Human Cellular Retinol Binding Protein II
Descriptor:	ACETATE ION, RETINAL, Retinol-binding protein 2
Authors:	Assar, Z, Nossoni, Z, Geiger, J.H.
Deposit date:	2015-05-11
Release date:	2016-06-08
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (1.8024 Å)
Cite:	Domain-Swapped Dimers of Intracellular Lipid-Binding Proteins: Evidence for Ordered Folding Intermediates. Structure, 24, 2016

4GKC

Crystal structure of Q108K:K40L:T51V:T53C:R58W:T29L:Y19W:Q4A mutant of cellular retinol binding protein II complex with all-trans-retinal at 1.33
Descriptor:	RETINAL, Retinol-binding protein 2
Authors:	Nossoni, Z, Geiger, J.H.
Deposit date:	2012-08-10
Release date:	2012-12-26
Last modified:	2023-09-13
Method:	X-RAY DIFFRACTION (1.3 Å)
Cite:	Tuning the electronic absorption of protein-embedded all-trans-retinal. Science, 338, 2012

3CR6

Crystal Structure of the R132K:R111L:A32E Mutant of Cellular Retinoic Acid Binding Protein Type II Complexed with C15-aldehyde (a retinal analog) at 1.22 Angstrom resolution.
Descriptor:	1,3,3-trimethyl-2-[(1E,3E)-3-methylpenta-1,3-dien-1-yl]cyclohexene, Cellular retinoic acid-binding protein 2
Authors:	Jia, X, Geiger, J.H.
Deposit date:	2008-04-04
Release date:	2009-03-17
Last modified:	2023-08-30
Method:	X-RAY DIFFRACTION (1.22 Å)
Cite:	Two distinctive orientations of binding determined by a single mutation in the CRABPII mutant-C15-aldehyde complexes To be Published

8SDB

Crystal Structure of E.Coli Branching Enzyme in complex with malto-octose
Descriptor:	1,4-alpha-glucan branching enzyme GlgB, alpha-D-glucopyranose, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
Authors:	Bingham, C.R, Nayebi, H, Fawaz, R, Geiger, J.H.
Deposit date:	2023-04-06
Release date:	2023-07-12
Last modified:	2023-08-16
Method:	X-RAY DIFFRACTION (3 Å)
Cite:	The Structure of Maltooctaose-Bound Escherichia coli Branching Enzyme Suggests a Mechanism for Donor Chain Specificity. Molecules, 28, 2023

2G78

Crystal Structure of the R132K:Y134F Mutant of Cellular Retinoic Acid Binding Protein Type II in Complex with All-Trans-Retinoic Acid at 1.70 Angstroms Resolution
Descriptor:	Cellular retinoic acid-binding protein 2, RETINOIC ACID, SODIUM ION
Authors:	Vaezeslami, S, Geiger, J.H.
Deposit date:	2006-02-27
Release date:	2007-04-17
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	Protein design: reengineering cellular retinoic acid binding protein II into a rhodopsin protein mimic. J.Am.Chem.Soc., 129, 2007

2G7B

Crystal Structure of the R132K:R111L:L121E mutant of Cellular Retinoic Acid Binding Protein Type II In Complex With All-Trans-Retinal At 1.18 Angstroms Resolution
Descriptor:	ALL-TRANS AXEROPHTHENE, Cellular retinoic acid-binding protein 2, SODIUM ION
Authors:	Vaezeslami, S, Geiger, J.H.
Deposit date:	2006-02-27
Release date:	2007-04-17
Last modified:	2021-10-20
Method:	X-RAY DIFFRACTION (1.18 Å)
Cite:	Protein design: reengineering cellular retinoic acid binding protein II into a rhodopsin protein mimic. J.Am.Chem.Soc., 129, 2007

2G79

Crystal Structure of the R132K:Y134F Mutant of Cellular Retinoic Acid Binding Protein Type II in Complex with All-Trans-Retinal at 1.69 Angstroms Resolution
Descriptor:	Cellular retinoic acid-binding protein 2, RETINAL, SODIUM ION, ...
Authors:	Vaezeslami, S, Geiger, J.H.
Deposit date:	2006-02-27
Release date:	2007-04-17
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (1.69 Å)
Cite:	Protein design: reengineering cellular retinoic acid binding protein II into a rhodopsin protein mimic. J.Am.Chem.Soc., 129, 2007

3COP

Crystal Structure of E.coli GS mutant E377A in complex with ADP and acceptor analogue HEPPSO
Descriptor:	(2R)-2-hydroxy-3-[4-(2-hydroxyethyl)piperazin-1-yl]propane-1-sulfonic acid, ADENOSINE-5'-DIPHOSPHATE, Glycogen synthase, ...
Authors:	Sheng, F, Geiger, J.H.
Deposit date:	2008-03-28
Release date:	2009-03-24
Last modified:	2023-08-30
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	The Crystal Structures of the Open and Catalytically Competent Closed Conformation of Escherichia coli Glycogen Synthase. J.Biol.Chem., 284, 2009

3D96

Crystal Structure of the R132K:Y134F Mutant of Apo-Cellular Retinoic Acid Binding Protein Type II at 1.71 Angstroms Resolution
Descriptor:	ACETATE ION, Cellular retinoic acid-binding protein 2
Authors:	Vaezeslami, S, Geiger, J.H.
Deposit date:	2008-05-26
Release date:	2008-07-22
Last modified:	2024-02-21
Method:	X-RAY DIFFRACTION (1.71 Å)
Cite:	Structural analysis of site-directed mutants of cellular retinoic acid-binding protein II addresses the relationship between structural integrity and ligand binding. Acta Crystallogr.,Sect.D, 64, 2008

3D95

Crystal Structure of the R132K:Y134F:R111L:L121E:T54V Mutant of Apo-Cellular Retinoic Acid Binding Protein Type II at 1.20 Angstroms Resolution
Descriptor:	Cellular retinoic acid-binding protein 2
Authors:	Vaezeslami, S, Geiger, J.H.
Deposit date:	2008-05-26
Release date:	2008-07-22
Last modified:	2024-02-21
Method:	X-RAY DIFFRACTION (1.2 Å)
Cite:	Structural analysis of site-directed mutants of cellular retinoic acid-binding protein II addresses the relationship between structural integrity and ligand binding. Acta Crystallogr.,Sect.D, 64, 2008

5U6G

Crystal Structure of the holo Domain-Swapped Dimer mutant Q108K:K40D Human Cellular Retinol Binding Protein II bound with all trans retinal
Descriptor:	RETINAL, Retinol-binding protein 2
Authors:	Assar, Z, Geiger, J.H.
Deposit date:	2016-12-08
Release date:	2017-10-18
Last modified:	2023-10-04
Method:	X-RAY DIFFRACTION (2.6 Å)
Cite:	Crystal Structure of the holo Domain-Swapped Dimer mutant Q108K:K40D Human Cellular Retinol Binding Protein II bound with all trans retinal To Be Published

4I9S

Crystal Structure of the R111K:R132L:Y134F:T54V:R59W Mutant of the Cellular Retinoic Acid Binding Protein Type II in Complex with All-Trans Retinal at 2.58 Angstrom Resolution
Descriptor:	Cellular retinoic acid-binding protein 2, RETINAL
Authors:	Nosrati, M, Geiger, J.H.
Deposit date:	2012-12-05
Release date:	2013-10-09
Last modified:	2023-09-20
Method:	X-RAY DIFFRACTION (2.58 Å)
Cite:	Rational Design of a Colorimetric pH Sensor from a Soluble Retinoic Acid Chaperone. J.Am.Chem.Soc., 135, 2013

4I9R

Crystal Structure of the R111K:R132L:Y134F:T54V:R59W:A32W Mutant of the Cellular Retinoic Acid Binding Protein Type II in Complex with All-Trans Retinal at 2.6 Angstrom Resolution
Descriptor:	Cellular retinoic acid-binding protein 2, RETINAL
Authors:	Nosrati, M, Geiger, J.H.
Deposit date:	2012-12-05
Release date:	2013-10-09
Last modified:	2023-09-20
Method:	X-RAY DIFFRACTION (2.6 Å)
Cite:	Rational Design of a Colorimetric pH Sensor from a Soluble Retinoic Acid Chaperone. J.Am.Chem.Soc., 135, 2013

8W00

Q108K:K40L:T51V:T53S:Y19W:R58W:L117E mutant of hCRBPII bound to synthetic fluorophore TD-1V
Descriptor:	(2E)-3-{5-[4-(dimethylamino)phenyl]thiophen-2-yl}but-2-enal, ACETATE ION, Retinol-binding protein 2
Authors:	Nossoni, Z, Bingham, C.R, Geiger, J.H.
Deposit date:	2024-02-13
Release date:	2024-04-03
Method:	X-RAY DIFFRACTION (1.23 Å)
Cite:	Regulation of Emission via a Protein-Bound Fluorophore To Be Published

8VZZ

Q108K:K40L:T51V:T53S:Y19W:R58W mutant of hCRBPII bound to synthetic fluorophore TD-1V
Descriptor:	(2E)-3-{5-[4-(dimethylamino)phenyl]thiophen-2-yl}but-2-enal, ACETATE ION, Retinol-binding protein 2
Authors:	Nosssoni, Z, Bingham, C.R, Geiger, J.H, Borhan, B.
Deposit date:	2024-02-13
Release date:	2024-04-03
Method:	X-RAY DIFFRACTION (1.22 Å)
Cite:	Regulation of Emission via a Protein-Bound Fluorophore To Be Published

8VZY

Q108K:K40L:T51V:T53S:R58Y mutant of hCRBPII bound to synthetic fluorophore TD-1V
Descriptor:	(2E)-3-{5-[4-(dimethylamino)phenyl]thiophen-2-yl}but-2-enal, ACETATE ION, Retinol-binding protein 2
Authors:	Nossoni, Z, Bingham, C.R, Geiger, J.H, Borhan, B.
Deposit date:	2024-02-13
Release date:	2024-04-03
Method:	X-RAY DIFFRACTION (1.34 Å)
Cite:	Regulation of Emission via a Protein-Bound Fluorophore To Be Published

8W02

Q108K:K40L:T51V:T53S:R58W mutant of hCRBPII bound to synthetic fluorophore TD-1V
Descriptor:	(2E)-3-{5-[4-(dimethylamino)phenyl]thiophen-2-yl}but-2-enal, ACETATE ION, Retinol-binding protein 2
Authors:	Ghanbarpour, A, Geiger, J.H, Borhan, B.
Deposit date:	2024-02-13
Release date:	2024-04-03
Method:	X-RAY DIFFRACTION (1.499 Å)
Cite:	Regulation of Emission via a Protein-Bound Fluorophore To Be Published

8VZX

Q108K:K40L:T53A:R58F mutant of hCRBPII bound to synthetic fluorophore TD-1V
Descriptor:	(2E)-3-{5-[4-(dimethylamino)phenyl]thiophen-2-yl}but-2-enal, ACETATE ION, Retinol-binding protein 2
Authors:	Nossoni, Z, Bingham, C.R, Geiger, J.H.
Deposit date:	2024-02-13
Release date:	2024-04-03
Method:	X-RAY DIFFRACTION (1.47 Å)
Cite:	Regulation of Emission via a Protein-Bound Fluorophore To Be Published

4LPC

Crystal Structure of E.Coli Branching Enzyme in complex with maltoheptaose
Descriptor:	1,4-alpha-glucan branching enzyme GlgB, GLYCEROL, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
Authors:	Feng, L, Geiger, J.H.
Deposit date:	2013-07-16
Release date:	2015-04-01
Last modified:	2024-02-28
Method:	X-RAY DIFFRACTION (2.39 Å)
Cite:	Crystal Structures of Escherichia coli Branching Enzyme in Complex with Linear Oligosaccharides. Biochemistry, 54, 2015

4LQ1

Crystal Structure of E.Coli Branching Enzyme in complex with maltohexaose
Descriptor:	1,4-alpha-glucan branching enzyme GlgB, GLYCEROL, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
Authors:	Feng, L, Geiger, J.H.
Deposit date:	2013-07-17
Release date:	2015-04-01
Last modified:	2024-02-28
Method:	X-RAY DIFFRACTION (2.55 Å)
Cite:	Crystal Structures of Escherichia coli Branching Enzyme in Complex with Linear Oligosaccharides. Biochemistry, 54, 2015

4M6S

Crystal structure of the R111K:R132Y:Y134F:T54V:R59W:A32W mutant of the Cellular Retinoic Acid Binding Protein Type II in complex with All-Trans Retinal at 2.38 Angstrom Resolution
Descriptor:	Cellular retinoic acid-binding protein 2, RETINAL
Authors:	Nosrati, M, Geiger, J.H.
Deposit date:	2013-08-10
Release date:	2013-10-09
Last modified:	2023-09-20
Method:	X-RAY DIFFRACTION (2.47 Å)
Cite:	Rational Design of a Colorimetric pH Sensor from a Soluble Retinoic Acid Chaperone. J.Am.Chem.Soc., 135, 2013

4M7M

Crystal structure of the R111K:R132Q:Y134F:T54V:R59W:A32W mutant of the Cellular Retinoic Acid Binding Protein Type II in complex with All-Trans Retinal at 2.57 Angstrom Resolution
Descriptor:	Cellular retinoic acid-binding protein 2, RETINAL
Authors:	Nosrati, M, Geiger, J.H.
Deposit date:	2013-08-12
Release date:	2013-10-09
Last modified:	2014-02-19
Method:	X-RAY DIFFRACTION (2.571 Å)
Cite:	Rational Design of a Colorimetric pH Sensor from a Soluble Retinoic Acid Chaperone. J.Am.Chem.Soc., 135, 2013

7ML5

Structure of the Starch Branching Enzyme I (BEI) complexed with maltododecaose from Oryza sativa L
Descriptor:	Isoform 2 of 1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
Authors:	Nayebi Gavgani, H, Fawaz, R, Geiger, J.H.
Deposit date:	2021-04-27
Release date:	2021-11-17
Last modified:	2023-10-18
Method:	X-RAY DIFFRACTION (2.35 Å)
Cite:	A structural explanation for the mechanism and specificity of plant branching enzymes I and IIb. J.Biol.Chem., 298, 2021

7MS9

Crystal structure of E114D mutant of Cg10062 with a covalent intermediate of the hydration of acetylenecarboxylic acid
Descriptor:	3-HYDROXY-PROPANOIC ACID, 4-oxalocrotonate tautomerase, SULFATE ION
Authors:	Nayebi, G.H, Geiger, J.H, Draths, K.
Deposit date:	2021-05-10
Release date:	2022-02-02
Last modified:	2023-10-18
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	Cg10062 Catalysis Forges a Link between Acetylenecarboxylic Acid and Bacterial Metabolism. Biochemistry, 60, 2021

3I17

Crystal structure of the apo R132K:L121E mutant of cellular retinoic acid-binding protein II at 1.68 angstrom resolution
Descriptor:	Cellular retinoic acid-binding protein 2
Authors:	Jia, X, Watson, C.T, Geiger, J.H.
Deposit date:	2009-06-25
Release date:	2009-07-28
Last modified:	2023-09-06
Method:	X-RAY DIFFRACTION (1.68 Å)
Cite:	Elucidating the exact role of engineered CRABPII residues for the formation of a retinal protonated Schiff base. Proteins, 77, 2009

12 3 4 5 >

Total results:	121
Displayed results:	25
Sorted by:	Hit score (from highest)
Deposition authors:	"Geiger, J.H."