PDB Search results for query - Protein Data Bank Japan

PDB: 187 results

Crystal structure of the R132K:Y134F:R111L:L121D:T54V mutant of cellular retinoic acid-binding protein II complexed with C15-aldehyde (a retinal analog) at 1.54 angstrom resolution
Descriptor:	1,3,3-trimethyl-2-[(1E,3E)-3-methylpenta-1,3-dien-1-yl]cyclohexene, Cellular retinoic acid-binding protein 2
Authors:	Jia, X, Geiger, J.H.
Deposit date:	2008-11-15
Release date:	2009-10-27
Last modified:	2023-12-27
Method:	X-RAY DIFFRACTION (1.54 Å)
Cite:	Two distinctive orientations of binding determined by a single mutation in the CRABPII mutant-C15-aldehyde complexes To be Published

3COP

Crystal Structure of E.coli GS mutant E377A in complex with ADP and acceptor analogue HEPPSO
Descriptor:	(2R)-2-hydroxy-3-[4-(2-hydroxyethyl)piperazin-1-yl]propane-1-sulfonic acid, ADENOSINE-5'-DIPHOSPHATE, Glycogen synthase, ...
Authors:	Sheng, F, Geiger, J.H.
Deposit date:	2008-03-28
Release date:	2009-03-24
Last modified:	2023-08-30
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	The Crystal Structures of the Open and Catalytically Competent Closed Conformation of Escherichia coli Glycogen Synthase. J.Biol.Chem., 284, 2009

4ZJ0

The crystal structure of monomer Q108K:K40L:Y60W CRBPII bound to all-trans-retinal
Descriptor:	ACETATE ION, RETINAL, Retinol-binding protein 2
Authors:	Nossoni, Z, Assar, Z, Wang, W, Vasileiou, C, Borhan, B, Geiger, J.H.
Deposit date:	2015-04-28
Release date:	2016-05-11
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (1.5 Å)
Cite:	Domain-Swapped Dimers of Intracellular Lipid-Binding Proteins: Evidence for Ordered Folding Intermediates. Structure, 24, 2016

3CR6

Crystal Structure of the R132K:R111L:A32E Mutant of Cellular Retinoic Acid Binding Protein Type II Complexed with C15-aldehyde (a retinal analog) at 1.22 Angstrom resolution.
Descriptor:	1,3,3-trimethyl-2-[(1E,3E)-3-methylpenta-1,3-dien-1-yl]cyclohexene, Cellular retinoic acid-binding protein 2
Authors:	Jia, X, Geiger, J.H.
Deposit date:	2008-04-04
Release date:	2009-03-17
Last modified:	2023-08-30
Method:	X-RAY DIFFRACTION (1.22 Å)
Cite:	Two distinctive orientations of binding determined by a single mutation in the CRABPII mutant-C15-aldehyde complexes To be Published

3F9D

Crystal structure of the R132K:R111L:T54E mutant of cellular retinoic acid-binding protein II complexed with C15-aldehyde (a retinal analog) at 2.00 angstrom resolution
Descriptor:	1,3,3-trimethyl-2-[(1E,3E)-3-methylpenta-1,3-dien-1-yl]cyclohexene, Cellular retinoic acid-binding protein 2
Authors:	Jia, X, Geiger, J.H.
Deposit date:	2008-11-13
Release date:	2009-10-27
Last modified:	2023-09-06
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Two distinctive orientations of binding determined by a single mutation in the CRABPII mutant-C15-aldehyde complexes To be Published

3D1J

Crystal Structure of E.coli GS mutant dmGS(C7S;C408S)
Descriptor:	Glycogen synthase
Authors:	Sheng, F, Geiger, J.H.
Deposit date:	2008-05-06
Release date:	2009-03-24
Last modified:	2023-08-30
Method:	X-RAY DIFFRACTION (3 Å)
Cite:	The Crystal Structures of the Open and Catalytically Competent Closed Conformation of Escherichia coli Glycogen Synthase. J.Biol.Chem., 284, 2009

3CX4

Crystal Structure of E.coli GS mutant E377A in complex with ADP and oligosaccharides
Descriptor:	(2R)-2-hydroxy-3-[4-(2-hydroxyethyl)piperazin-1-yl]propane-1-sulfonic acid, 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL, ADENOSINE-5'-DIPHOSPHATE, ...
Authors:	Sheng, F, Geiger, J.H.
Deposit date:	2008-04-23
Release date:	2009-04-28
Last modified:	2023-08-30
Method:	X-RAY DIFFRACTION (2.29 Å)
Cite:	Oligosaccharide binding in Escherichia coli glycogen synthase. Biochemistry, 48, 2009

3FEP

Crystal structure of the R132K:R111L:L121E:R59W-CRABPII mutant complexed with a synthetic ligand (merocyanin) at 2.60 angstrom resolution.
Descriptor:	(2E,4E,6E)-3-methyl-6-(1,3,3-trimethyl-1,3-dihydro-2H-indol-2-ylidene)hexa-2,4-dienal, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Cellular retinoic acid-binding protein 2
Authors:	Jia, X, Geiger, J.H.
Deposit date:	2008-11-30
Release date:	2009-11-10
Last modified:	2023-09-06
Method:	X-RAY DIFFRACTION (2.6 Å)
Cite:	"Turn-on" protein fluorescence: in situ formation of cyanine dyes. J.Am.Chem.Soc., 137, 2015

4YH0

Crystal structure of the R111K:Y134F:T54V:R132Q:P39Y:R59Y mutant of human Cellular Retinoic Acid Binding Protein II in complex with Retinal at 2.14 angstrom resolution - UV irradiated crystal - 3rd cycle
Descriptor:	Cellular retinoic acid-binding protein 2, RETINAL
Authors:	Nosrati, M, Geiger, J.H.
Deposit date:	2015-02-26
Release date:	2016-03-02
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (2.144 Å)
Cite:	A Photoisomerizing Rhodopsin Mimic Observed at Atomic Resolution. J.Am.Chem.Soc., 138, 2016

4YDA

Crystal structure of R111K:Y134F:T54V:R132Q:P39Q:R59Y mutant of human cellular retinoic acid binding proteinii with retinal at 1.95 angstrom - after 1hour visible light irradiation - 3rd cycle
Descriptor:	Cellular retinoic acid-binding protein 2, RETINAL
Authors:	Nosrati, M, Geiger, J.H.
Deposit date:	2015-02-21
Release date:	2016-02-24
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (1.951 Å)
Cite:	A Photoisomerizing Rhodopsin Mimic Observed at Atomic Resolution. J.Am.Chem.Soc., 138, 2016

4YDB

Crystal structure of the R111K:Y134F:T54V:R132Q:P39Q:R59Y mutant of human Cellular Retinoic Acid Binding Protein II in complex with Retinal at 2.03 angstrom -UV irradiated crystal- 3rd cycle
Descriptor:	Cellular retinoic acid-binding protein 2, RETINAL
Authors:	Nosrati, M, Geiger, J.H.
Deposit date:	2015-02-21
Release date:	2016-02-24
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (2.03 Å)
Cite:	A Photoisomerizing Rhodopsin Mimic Observed at Atomic Resolution. J.Am.Chem.Soc., 138, 2016

4YFP

CRYSTAL STRUCTURE OF THE R111K:Y134F:T54V:R132Q:P39Y:R59Y MUTANT OF HUMAN CELLULAR RETINOIC ACID BINDING PROTEIN II WITH RETINAL AFTER 20 MINUTES INCUBATION AT 1.95 ANGSTROM RESOLUTION-Kinetic Product
Descriptor:	Cellular retinoic acid-binding protein 2, RETINAL
Authors:	Nosrati, M, Geiger, J.H.
Deposit date:	2015-02-25
Release date:	2016-03-02
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (1.951 Å)
Cite:	A Photoisomerizing Rhodopsin Mimic Observed at Atomic Resolution. J.Am.Chem.Soc., 138, 2016

4YGG

CRYSTAL STRUCTURE OF R111K:Y134F:T54V:R132Q:P39Y:R59Y MUTANT OF HUMAN CELLULAR RETINOIC ACID BINDING PROTEIN II WITH RETINAL AT 1.9 ANGSTROM RESOLUTION - VISIBLE LIGHT IRRADIATED CRYSTAL - 2ND CYCLE
Descriptor:	Cellular retinoic acid-binding protein 2, RETINAL
Authors:	Nosrati, M, Geiger, J.H.
Deposit date:	2015-02-26
Release date:	2016-03-02
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	A Photoisomerizing Rhodopsin Mimic Observed at Atomic Resolution. J.Am.Chem.Soc., 138, 2016

4YBU

Crystal structure of the R111K:Y134F:T54V:R132Q:P39Q:R59Y mutant of human Cellular Retinoic Acid Binding ProteinII in complex with Retinal after 24 h incubation and 1 hour UV irradiation at 1.92 angstrom - 1st cycle
Descriptor:	Cellular retinoic acid-binding protein 2, RETINAL
Authors:	Nosrati, M, Geiger, J.H.
Deposit date:	2015-02-19
Release date:	2016-02-24
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (1.924 Å)
Cite:	A Photoisomerizing Rhodopsin Mimic Observed at Atomic Resolution. J.Am.Chem.Soc., 138, 2016

4YCH

Crystal Structure of R111K:Y134F:T54V:R132Q:P39Q:R59Y mutant of human Cellular Retinoic Acid Binding ProteinII with Retinal at 1.96 Angstrom - UV irradiated Crystal for 1 hour - 2nd cycle
Descriptor:	Cellular retinoic acid-binding protein 2, RETINAL
Authors:	Nosrati, M, Geiger, J.H.
Deposit date:	2015-02-20
Release date:	2016-02-24
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (1.96 Å)
Cite:	A Photoisomerizing Rhodopsin Mimic Observed at Atomic Resolution. J.Am.Chem.Soc., 138, 2016

4YGH

Crystal Structure of R111K:Y134F:T54V:R132Q:P39Y:R59Y mutant of human Cellular Retinoic Acid Binding Protein II with Retinal at 2.1 Angstrom resolution - UV irradiated crystal - 2nd cycle
Descriptor:	Cellular retinoic acid-binding protein 2, RETINAL
Authors:	Nosrati, M, Geiger, J.H.
Deposit date:	2015-02-26
Release date:	2016-03-02
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	A Photoisomerizing Rhodopsin Mimic Observed at Atomic Resolution. J.Am.Chem.Soc., 138, 2016

4YBP

Crystal structure of the R111K:Y134F:T54V:R132Q:P39Q:R59Y mutant of human cellular retinoic acid binding proteinii with retinal after 24 hour incubation at 1.83 angstrom resolution - thermodynamic product - 1st cycle
Descriptor:	Cellular retinoic acid-binding protein 2, RETINAL
Authors:	Nosrati, M, Geiger, J.H.
Deposit date:	2015-02-19
Release date:	2016-02-24
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (1.831 Å)
Cite:	A Photoisomerizing Rhodopsin Mimic Observed at Atomic Resolution. J.Am.Chem.Soc., 138, 2016

4YGZ

CRYSTAL STRUCTURE OF THE R111K:Y134F:T54V:R132Q:P39Y:R59Y MUTANT OF HUMAN CELLULAR RETINOIC ACID BINDING PROTEIN II WITH RETINAL AT 2.06 ANGSTROM RESOLUTION - VISIBLE LIGHT IRRADIATED CRYSTAL -3RD CYCLE
Descriptor:	Cellular retinoic acid-binding protein 2, RETINAL
Authors:	Nosrati, M, Geiger, J.H.
Deposit date:	2015-02-26
Release date:	2016-03-02
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (2.06 Å)
Cite:	A Photoisomerizing Rhodopsin Mimic Observed at Atomic Resolution. J.Am.Chem.Soc., 138, 2016

4YCE

Crystal structure of the R111K:Y134F:T54V:R132Q:P39Q:R59Y mutant of human cellular retinoic acid binding proteinii with retinal at 1.95 angstrom- visible light irradiated crystal for 1 hour - 2nd cycle
Descriptor:	Cellular retinoic acid-binding protein 2, RETINAL
Authors:	Nosrati, M, Geiger, J.H.
Deposit date:	2015-02-19
Release date:	2016-02-24
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (1.953 Å)
Cite:	A Photoisomerizing Rhodopsin Mimic Observed at Atomic Resolution. J.Am.Chem.Soc., 138, 2016

4YFQ

CRYSTAL STRUCTURE OF THE R111K:Y134F:T54V:R132Q:P39Y:R59Y MUTANT OF HUMAN CELLULAR RETINOIC ACID BINDING PROTEINII WITH RETINAL AFTER 24 HOURS INCUBATION AT 1.62 ANGSTROM RESOLUTION - Thermodynamic product - 1st cycle
Descriptor:	Cellular retinoic acid-binding protein 2, RETINAL
Authors:	Nosrati, M, Geiger, J.H.
Deposit date:	2015-02-25
Release date:	2016-03-02
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (1.62 Å)
Cite:	A Photoisomerizing Rhodopsin Mimic Observed at Atomic Resolution. J.Am.Chem.Soc., 138, 2016

4YFR

Crystal structure of the R111K:Y134F:T54V:R132Q:P39Y:R59Y mutant of human Cellular Retinoic Acid Binding Protein II with Retinal at 1.95 Angstrom Resolution - UV irradiated crystal for 30 minutes - 1st Cycle
Descriptor:	Cellular retinoic acid-binding protein 2, RETINAL
Authors:	Nosrati, M, Geiger, J.H.
Deposit date:	2015-02-25
Release date:	2016-03-02
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (1.952 Å)
Cite:	A Photoisomerizing Rhodopsin Mimic Observed at Atomic Resolution. J.Am.Chem.Soc., 138, 2016

4YKM

Crystal structure of the R111K:Y134F:T54V:R132Q:P39Q:R59Y:A32W:F3Q mutant of human Cellular Retinoic Acid Binding Protein II with Retinal at 1.58 angstrom resolution
Descriptor:	Cellular retinoic acid-binding protein 2, RETINAL
Authors:	Nosrati, M, Geiger, J.H.
Deposit date:	2015-03-04
Release date:	2016-03-09
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (1.58 Å)
Cite:	A Photoisomerizing Rhodopsin Mimic Observed at Atomic Resolution. J.Am.Chem.Soc., 138, 2016

4ZJZ

Crystal structure of a benzoate coenzyme A ligase with Benzoyl-AMP
Descriptor:	5'-O-[(R)-(benzoyloxy)(hydroxy)phosphoryl]adenosine, BENZOIC ACID, Benzoate-coenzyme A ligase, ...
Authors:	Strom, S, Nosrati, M, Thornburg, C, Walker, K.D, Geiger, J.H.
Deposit date:	2015-04-29
Release date:	2015-09-30
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	Kinetically and Crystallographically Guided Mutations of a Benzoate CoA Ligase (BadA) Elucidate Mechanism and Expand Substrate Permissivity. Biochemistry, 54, 2015

6MOW

Crystal Structure of the apo R111K:Y134F:T54V:R132Q:P39Y:R59Y:L121Q mutant of Human Cellular Retinoic Acid Binding Protein II at 2.3 Angstrom Resolution
Descriptor:	Cellular retinoic acid-binding protein 2
Authors:	Ghanbarpour, A, Geiger, J.
Deposit date:	2018-10-04
Release date:	2019-10-09
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (2.354 Å)
Cite:	Crystal Structure of the apo R111K:Y134F:T54V:R132Q:P39Y:R59Y:L121Q mutant of Human Cellular Retinoic Acid Binding Protein II at 2.3 Angstrom Resolution To Be Published

6NNX

Crystal Structure of the All-Trans Retinal-Bound R111K:Y134F:T54V:R132Q:P39Y:R59Y:L121M Mutant of Human Cellular Retinoic Acid Binding Protein II in the Dark at 1.87 Angstrom Resolution
Descriptor:	Cellular retinoic acid-binding protein 2, RETINAL
Authors:	Ghanbarpour, A, Geiger, J.
Deposit date:	2019-01-15
Release date:	2019-01-30
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (1.87 Å)
Cite:	Crystal Structure of the All-Trans Retinal-Bound R111K:Y134F:T54V:R132Q:P39Y:R59Y:L121M Mutant of Human Cellular Retionic Acid Binding Protein II in the Dark at 1.87 Angstrom Resolution To Be Published

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Total results:	187
Displayed results:	25
Sorted by:	Hit score (from highest)
Deposition authors:	"Geiger, J"