Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 51 件

8UU4
DownloadVisualize
BU of 8uu4 by Molmil
Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 5S Ribosomal RNA, ...
著者Seely, S.M, Basu, R.S, Gagnon, M.G.
登録日2023-10-31
公開日2024-02-28
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Mechanistic insights into the alternative ribosome recycling by HflXr.
Nucleic Acids Res., 52, 2024
8UU5
DownloadVisualize
BU of 8uu5 by Molmil
Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 5S Ribosomal RNA, ...
著者Seely, S.M, Basu, R.S, Gagnon, M.G.
登録日2023-10-31
公開日2024-02-28
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Mechanistic insights into the alternative ribosome recycling by HflXr.
Nucleic Acids Res., 52, 2024
8UU8
DownloadVisualize
BU of 8uu8 by Molmil
Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 5S Ribosomal RNA, ...
著者Seely, S.M, Basu, R.S, Gagnon, M.G.
登録日2023-10-31
公開日2024-02-28
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Mechanistic insights into the alternative ribosome recycling by HflXr.
Nucleic Acids Res., 52, 2024
8UU9
DownloadVisualize
BU of 8uu9 by Molmil
Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 5S Ribosomal RNA, ...
著者Seely, S.M, Basu, R.S, Gagnon, M.G.
登録日2023-10-31
公開日2024-02-28
最終更新日2024-05-08
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Mechanistic insights into the alternative ribosome recycling by HflXr.
Nucleic Acids Res., 52, 2024
8FZF
DownloadVisualize
BU of 8fzf by Molmil
Cryo-EM structure of an E. coli rotated ribosome complex bound with RF3-ppGpp and p/E-tRNAPhe (Composite state I-C)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Rybak, M.Y, Li, L, Lin, J, Gagnon, M.G.
登録日2023-01-28
公開日2024-06-26
最終更新日2024-08-07
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献The ribosome termination complex remodels release factor RF3 and ejects GDP.
Nat.Struct.Mol.Biol., 2024
8FZE
DownloadVisualize
BU of 8fze by Molmil
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State I-A)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Rybak, M.Y, Li, L, Lin, J, Gagnon, M.G.
登録日2023-01-28
公開日2024-07-17
最終更新日2024-07-31
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献The ribosome termination complex remodels release factor RF3 and ejects GDP.
Nat.Struct.Mol.Biol., 2024
8FZI
DownloadVisualize
BU of 8fzi by Molmil
Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-B)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Rybak, M.Y, Li, L, Lin, J, Gagnon, M.G.
登録日2023-01-28
公開日2024-07-17
最終更新日2024-07-31
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献The ribosome termination complex remodels release factor RF3 and ejects GDP.
Nat.Struct.Mol.Biol., 2024
8FZD
DownloadVisualize
BU of 8fzd by Molmil
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with apoRF3, RF1, P- and E-site tRNAPhe (Composite state I-B)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Rybak, M.Y, Li, L, Lin, J, Gagnon, M.G.
登録日2023-01-28
公開日2024-07-17
最終更新日2024-07-31
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献The ribosome termination complex remodels release factor RF3 and ejects GDP.
Nat.Struct.Mol.Biol., 2024
8FZJ
DownloadVisualize
BU of 8fzj by Molmil
Cryo-EM structure of an E. coli rotated ribosome bound with RF3-GDPCP and p/E-tRNAPhe (Composite state II-C)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Rybak, M.Y, Li, L, Lin, J, Gagnon, M.G.
登録日2023-01-28
公開日2024-07-17
最終更新日2024-07-31
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献The ribosome termination complex remodels release factor RF3 and ejects GDP.
Nat.Struct.Mol.Biol., 2024
8FZG
DownloadVisualize
BU of 8fzg by Molmil
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF3-GDPCP, RF1, P- and E-site tRNAPhe (Composite state II-A)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Rybak, M.Y, Li, L, Lin, J, Gagnon, M.G.
登録日2023-01-28
公開日2024-07-17
最終更新日2024-08-07
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献The ribosome termination complex remodels release factor RF3 and ejects GDP.
Nat.Struct.Mol.Biol., 2024
8FZH
DownloadVisualize
BU of 8fzh by Molmil
Cryo-EM structure of an E. coli non-rotated ribosome termination complex bound with RF1, P- and E-site tRNAPhe (State II-D)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Rybak, M.Y, Li, L, Lin, J, Gagnon, M.G.
登録日2023-01-28
公開日2024-07-17
最終更新日2024-07-31
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献The ribosome termination complex remodels release factor RF3 and ejects GDP.
Nat.Struct.Mol.Biol., 2024
4WQU
DownloadVisualize
BU of 4wqu by Molmil
Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Lin, J, Gagnon, M.G, Steitz, T.A.
登録日2014-10-22
公開日2015-01-28
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Conformational Changes of Elongation Factor G on the Ribosome during tRNA Translocation.
Cell, 160, 2015
8V9J
DownloadVisualize
BU of 8v9j by Molmil
Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S Ribosomal Protein S14, ...
著者Rybak, M.Y, Helena-Bueno, K, Hill, C.H, Melnikov, S.V, Gagnon, M.G.
登録日2023-12-08
公開日2024-02-07
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献A new family of bacterial ribosome hibernation factors.
Nature, 626, 2024
8V9K
DownloadVisualize
BU of 8v9k by Molmil
Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S Ribosomal Protein S2, ...
著者Rybak, M.Y, Helena-Bueno, K, Hill, C.H, Melnikov, S.V, Gagnon, M.G.
登録日2023-12-08
公開日2024-02-07
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献A new family of bacterial ribosome hibernation factors.
Nature, 626, 2024
8V9L
DownloadVisualize
BU of 8v9l by Molmil
Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S Ribosomal Protein S2, ...
著者Rybak, M.Y, Helena-Bueno, K, Hill, C.H, Melnikov, S.V, Gagnon, M.G.
登録日2023-12-08
公開日2024-02-07
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献A new family of bacterial ribosome hibernation factors.
Nature, 626, 2024
4WPO
DownloadVisualize
BU of 4wpo by Molmil
Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Lin, J, Gagnon, M.G, Steitz, T.A.
登録日2014-10-20
公開日2015-01-28
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Conformational Changes of Elongation Factor G on the Ribosome during tRNA Translocation.
Cell, 160, 2015
7UNW
DownloadVisualize
BU of 7unw by Molmil
Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Basu, R.S, Sherman, M.B, Gagnon, M.G.
登録日2022-04-11
公開日2022-06-22
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (2.6 Å)
主引用文献Compact IF2 allows initiator tRNA accommodation into the P site and gates the ribosome to elongation
Nat Commun, 13, 2022
7UNV
DownloadVisualize
BU of 7unv by Molmil
Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Basu, R.S, Sherman, M.B, Gagnon, M.G.
登録日2022-04-11
公開日2022-06-22
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Compact IF2 allows initiator tRNA accommodation into the P site and gates the ribosome to elongation
Nat Commun, 13, 2022
7UNU
DownloadVisualize
BU of 7unu by Molmil
Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Basu, R.S, Sherman, M.B, Gagnon, M.G.
登録日2022-04-11
公開日2022-06-22
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Compact IF2 allows initiator tRNA accommodation into the P site and gates the ribosome to elongation
Nat Commun, 13, 2022
7UNR
DownloadVisualize
BU of 7unr by Molmil
Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)
分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ...
著者Basu, R.S, Sherman, M.B, Gagnon, M.G.
登録日2022-04-11
公開日2022-06-22
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Compact IF2 allows initiator tRNA accommodation into the P site and gates the ribosome to elongation
Nat Commun, 13, 2022
7UIU
DownloadVisualize
BU of 7uiu by Molmil
N2 sub-domain of IF2 bound to the 30S subunit in the Pseudomonas aeruginosa 70S ribosome initiation complex (focused classification and refinement)
分子名称: Translation initiation factor IF-2
著者Basu, R.S, Sherman, M.B, Gagnon, M.G.
登録日2022-03-29
公開日2022-06-22
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Compact IF2 allows initiator tRNA accommodation into the P site and gates the ribosome to elongation.
Nat Commun, 13, 2022
7UNQ
DownloadVisualize
BU of 7unq by Molmil
Compact IF2-GDP bound to the Pseudomonas aeruginosa 70S ribosome initiation complex, from focused classification and refinement (I-A)
分子名称: GUANOSINE-5'-DIPHOSPHATE, Translation initiation factor IF-2
著者Basu, R.S, Sherman, M.B, Gagnon, M.G.
登録日2022-04-11
公開日2022-06-22
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Compact IF2 allows initiator tRNA accommodation into the P site and gates the ribosome to elongation
Nat Commun, 13, 2022
7UNT
DownloadVisualize
BU of 7unt by Molmil
Compact IF2-GDP bound to the Pseudomonas aeruginosa 70S ribosome initiation complex, from focused classification and refinement (I-B)
分子名称: GUANOSINE-5'-DIPHOSPHATE, Translation initiation factor IF-2
著者Basu, R.S, Sherman, M.B, Gagnon, M.G.
登録日2022-04-11
公開日2022-06-22
最終更新日2024-02-14
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Compact IF2 allows initiator tRNA accommodation into the P site and gates the ribosome to elongation
Nat Commun, 13, 2022
5FX6
DownloadVisualize
BU of 5fx6 by Molmil
Novel inhibitors of human rhinovirus 3C protease
分子名称: RHINOVIRUS 3C PROTEASE, ethyl (4R)-4-[[(2S,4S)-1-[(2S)-3-methyl-2-[(5-methyl-1,2-oxazol-3-yl)carbonylamino]butanoyl]-4-phenyl-pyrrolidin-2-yl]carbonylamino]-5-[(3S)-2-oxidanylidenepyrrolidin-3-yl]pentanoate
著者Kawatkar, S, Ek, M, Hoesch, V, Gagnon, M, Nilsson, E, Lister, T, Olsson, L, Patel, J, Yu, Q.
登録日2016-02-24
公開日2016-06-22
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Design and Structure-Activity Relationships of Novel Inhibitors of Human Rhinovirus 3C Protease.
Bioorg.Med.Chem.Lett., 26, 2016
5FX5
DownloadVisualize
BU of 5fx5 by Molmil
Novel inhibitors of human rhinovirus 3C protease
分子名称: GLYCEROL, RHINOVIRUS 3C PROTEASE, TETRAETHYLENE GLYCOL, ...
著者Kawatkar, S, Ek, M, Hoesch, V, Gagnon, M, Nilsson, E, Lister, T, Olsson, L, Patel, J, Yu, Q.
登録日2016-02-24
公開日2016-06-22
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Design and Structure-Activity Relationships of Novel Inhibitors of Human Rhinovirus 3C Protease.
Bioorg.Med.Chem.Lett., 26, 2016

224572

件を2024-09-04に公開中

PDB statisticsPDBj update infoContact PDBjnumon