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PDB: 83 results

5LWG
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BU of 5lwg by Molmil
Israeli acute paralysis virus heated to 63 degree - full particle
Descriptor: VP1, VP2, VP3, ...
Authors:Mullapudi, E, Fuzik, T, Pridal, A, Plevka, P.
Deposit date:2016-09-16
Release date:2016-11-30
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-electron Microscopy Study of the Genome Release of the Dicistrovirus Israeli Acute Bee Paralysis Virus.
J. Virol., 91, 2017
5LK8
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BU of 5lk8 by Molmil
single particle reconstruction of slow bee paralysis virus empty particle
Descriptor: VP1, VP2, VP3
Authors:Kalynych, S, Fuzik, T, Plevka, P.
Deposit date:2016-07-21
Release date:2017-01-18
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.42 Å)
Cite:Cryo-EM study of slow bee paralysis virus at low pH reveals iflavirus genome release mechanism.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5LVC
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BU of 5lvc by Molmil
Aichi virus 1: empty particle
Descriptor: VP0, VP1, VP3
Authors:Sabin, C, Fuzik, T, Skubnik, K, Palkova, L, Lindberg, A.M, Plevka, P.
Deposit date:2016-09-13
Release date:2016-12-14
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structure of Aichi Virus 1 and Its Empty Particle: Clues to Kobuvirus Genome Release Mechanism.
J.Virol., 90, 2016
6TE9
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BU of 6te9 by Molmil
Neck of native GTA particle computed with C6 symmetry
Descriptor: Adaptor protein Rcc01688, Phage major tail protein, TP901-1 family, ...
Authors:Bardy, P, Fuzik, T, Hrebik, D, Pantucek, R, Beatty, J.T, Plevka, P.
Deposit date:2019-11-11
Release date:2020-07-22
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.58 Å)
Cite:Structure and mechanism of DNA delivery of a gene transfer agent.
Nat Commun, 11, 2020
6TE8
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BU of 6te8 by Molmil
Neck of native GTA particle computed with C12 symmetry
Descriptor: Adaptor protein Rcc01688, Phage portal protein, HK97 family
Authors:Bardy, P, Fuzik, T, Hrebik, D, Pantucek, R, Beatty, J.T, Plevka, P.
Deposit date:2019-11-11
Release date:2020-07-22
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.32 Å)
Cite:Structure and mechanism of DNA delivery of a gene transfer agent.
Nat Commun, 11, 2020
6TEB
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BU of 6teb by Molmil
Tail-baseplate interface of native GTA particle computed with C6 symmetry
Descriptor: Distal tail protein Rcc01695, Tail tube protein Rcc01691
Authors:Bardy, P, Fuzik, T, Hrebik, D, Pantucek, R, Beatty, J.T, Plevka, P.
Deposit date:2019-11-11
Release date:2020-07-22
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (4.14 Å)
Cite:Structure and mechanism of DNA delivery of a gene transfer agent.
Nat Commun, 11, 2020
6TOA
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BU of 6toa by Molmil
Neck of empty GTA particle computed with C6 symmetry
Descriptor: Adaptor protein Rcc01688, Portal protein Rcc01684, Stopper protein Rcc01689, ...
Authors:Bardy, P, Fuzik, T, Hrebik, D, Pantucek, R, Beatty, J.T, Plevka, P.
Deposit date:2019-12-11
Release date:2020-07-22
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.47 Å)
Cite:Structure and mechanism of DNA delivery of a gene transfer agent.
Nat Commun, 11, 2020
5LWI
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BU of 5lwi by Molmil
Israeli acute paralysis virus heated to 63 degree - empty particle
Descriptor: Structural polyprotein, VP1, VP2
Authors:Mullapudi, E, Fuzik, T, Pridal, A, Plevka, P.
Deposit date:2016-09-16
Release date:2016-11-30
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Cryo-electron Microscopy Study of the Genome Release of the Dicistrovirus Israeli Acute Bee Paralysis Virus.
J. Virol., 91, 2017
6HBJ
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BU of 6hbj by Molmil
Echovirus 18 empty particle
Descriptor: Viral protein 1, Viral protein 2, Viral protein 3
Authors:Buchta, D, Fuzik, T, Hrebik, D, Levdansky, Y, Moravcova, J, Plevka, P.
Deposit date:2018-08-10
Release date:2019-03-20
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.16 Å)
Cite:Enterovirus particles expel capsid pentamers to enable genome release.
Nat Commun, 10, 2019
8PHO
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BU of 8pho by Molmil
Portal from the Borrelia bacteriophage BB1 procapsid
Descriptor: Phage portal protein
Authors:Rumnieks, J, Fuzik, T, Tars, K.
Deposit date:2023-06-20
Release date:2023-07-12
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.34 Å)
Cite:Structure of the Borrelia Bacteriophage phi BB1 Procapsid.
J.Mol.Biol., 435, 2023
8PHT
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BU of 8pht by Molmil
Scaffold rings inside the Borrelia bacteriophage BB1 procapsid
Descriptor: Scaffold protein
Authors:Rumnieks, J, Fuzik, T, Tars, K.
Deposit date:2023-06-20
Release date:2023-07-12
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (6.37 Å)
Cite:Structure of the Borrelia Bacteriophage phi BB1 Procapsid.
J.Mol.Biol., 435, 2023
8PHP
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BU of 8php by Molmil
Portal from the Borrelia bacteriophage BB1 procapsid with bound scaffold protein
Descriptor: Phage portal protein, Scaffold protein
Authors:Rumnieks, J, Fuzik, T, Tars, K.
Deposit date:2023-06-20
Release date:2023-07-19
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (2.56 Å)
Cite:Structure of the Borrelia Bacteriophage phi BB1 Procapsid.
J.Mol.Biol., 435, 2023
7Z46
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BU of 7z46 by Molmil
Top part (C5) of bacteriophage SU10 capsid
Descriptor: Major head protein
Authors:Siborova, M, Fuzik, T, Prochazkova, M, Novacek, J, Plevka, P.
Deposit date:2022-03-03
Release date:2022-08-24
Last modified:2022-10-12
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Tail proteins of phage SU10 reorganize into the nozzle for genome delivery.
Nat Commun, 13, 2022
6HBH
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BU of 6hbh by Molmil
Echovirus 18 A-particle
Descriptor: Echovirus 18 capsid protein 1, Echovirus 18 capsid protein 2, Echovirus 18 capsid protein 3
Authors:Buchta, D, Fuzik, T, Hrebik, D, Levdansky, Y, Moravcova, J, Plevka, P.
Deposit date:2018-08-10
Release date:2019-03-20
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (3.36 Å)
Cite:Enterovirus particles expel capsid pentamers to enable genome release.
Nat Commun, 10, 2019
8RBT
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BU of 8rbt by Molmil
Emiliania huxleyi virus 201 (EhV-201) capsid proteins predicted by AlphaFold2 fitted into a cryo-EM density map of the EhV-201 virion capsid.
Descriptor: Major capsid protein, Penton protein
Authors:Homola, M, Buttner, C.R, Fuzik, T, Novacek, J, Chaillet, M, Forster, F, Plevka, P.
Deposit date:2023-12-04
Release date:2023-12-20
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Structure and replication cycle of a virus infecting climate-modulating alga Emiliania huxleyi.
Sci Adv, 10, 2024
6IB1
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BU of 6ib1 by Molmil
Icosahedrally averaged capsid of empty particle of bacteriophage P68
Descriptor: Major head protein, Uncharacterized protein
Authors:Hrebik, D, Skubnik, K, Fuzik, T, Plevka, P.
Deposit date:2018-11-28
Release date:2019-11-06
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure and genome ejection mechanism ofStaphylococcus aureusphage P68.
Sci Adv, 5, 2019
6HBG
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BU of 6hbg by Molmil
Echovirus 18 native particle
Descriptor: Echovirus 18 viral protein 1, Echovirus 18 viral protein 2, Echovirus 18 viral protein 3, ...
Authors:Buchta, D, Fuzik, T, Hrebik, D, Levdansky, Y, Moravcova, J, Plevka, P.
Deposit date:2018-08-10
Release date:2019-03-20
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.16 Å)
Cite:Enterovirus particles expel capsid pentamers to enable genome release.
Nat Commun, 10, 2019
7ZUF
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BU of 7zuf by Molmil
Saccharomyces cerevisiae L-BC virus, open particle, C5 reconstruction
Descriptor: Major capsid protein
Authors:Grybchuk, D, Prochazkova, M, Fuzik, T, Konovalovas, A, Serva, S, Yurchenko, V, Plevka, P.
Deposit date:2022-05-12
Release date:2022-09-07
Method:ELECTRON MICROSCOPY (10 Å)
Cite:Structures of L-BC virus and its open particle provide insight into Totivirus capsid assembly.
Commun Biol, 5, 2022
6IAT
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BU of 6iat by Molmil
Icosahedrally averaged capsid of bacteriophage P68
Descriptor: Arstotzka protein, Major head protein
Authors:Hrebik, D, Skubnik, K, Fuzik, T, Plevka, P.
Deposit date:2018-11-27
Release date:2019-11-06
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure and genome ejection mechanism ofStaphylococcus aureusphage P68.
Sci Adv, 5, 2019
6IAC
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BU of 6iac by Molmil
Portal and tail of native bacteriophage P68
Descriptor: Lower collar protein, Minor structural protein, Portal protein, ...
Authors:Hrebik, D, Skubnik, K, Fuzik, T, Plevka, P.
Deposit date:2018-11-26
Release date:2019-11-06
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structure and genome ejection mechanism ofStaphylococcus aureusphage P68.
Sci Adv, 5, 2019
6IAW
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BU of 6iaw by Molmil
Structure of head fiber and inner core protein gp22 of native bacteriophage P68
Descriptor: Arstotzka protein, Head fiber, Major head protein, ...
Authors:Hrebik, D, Skubnik, K, Fuzik, T, Plevka, P.
Deposit date:2018-11-27
Release date:2019-11-06
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structure and genome ejection mechanism ofStaphylococcus aureusphage P68.
Sci Adv, 5, 2019
7Z4A
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BU of 7z4a by Molmil
Bacteriophage SU10 tail and bottom part of the capsid (C1)
Descriptor: Adaptor protein, Major head protein, Portal protein, ...
Authors:Siborova, M, Fuzik, T, Prochazkova, M, Novacek, J, Plevka, P.
Deposit date:2022-03-03
Release date:2022-08-17
Last modified:2022-10-12
Method:ELECTRON MICROSCOPY (4.6 Å)
Cite:Tail proteins of phage SU10 reorganize into the nozzle for genome delivery.
Nat Commun, 13, 2022
7Z45
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BU of 7z45 by Molmil
Central part (C10) of bacteriophage SU10 capsid
Descriptor: Major head protein
Authors:Siborova, M, Fuzik, T, Prochazkova, M, Novacek, J, Plevka, P.
Deposit date:2022-03-03
Release date:2022-08-24
Last modified:2022-10-12
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Tail proteins of phage SU10 reorganize into the nozzle for genome delivery.
Nat Commun, 13, 2022
7Z4B
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BU of 7z4b by Molmil
Bacteriophage SU10 virion (C1)
Descriptor: Adaptor, Major head protein, Portal protein, ...
Authors:Siborova, M, Fuzik, T, Prochazkova, M, Novacek, J, Plevka, P.
Deposit date:2022-03-03
Release date:2022-12-28
Method:ELECTRON MICROSCOPY (7.4 Å)
Cite:Tail proteins of phage SU10 reorganize into the nozzle for genome delivery.
Nat Commun, 13, 2022
7Z49
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BU of 7z49 by Molmil
The capsid of bacteriophage SU10.
Descriptor: Major head protein
Authors:Siborova, M, Fuzik, T, Prochazkova, M, Novacek, J, Plevka, P.
Deposit date:2022-03-03
Release date:2022-10-05
Last modified:2023-04-19
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Tail proteins of phage SU10 reorganize into the nozzle for genome delivery.
Nat Commun, 13, 2022

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PDB entries from 2024-06-26

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