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PDB: 25 件

1UDZ
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Isoleucyl-tRNA synthetase editing domain
分子名称: Isoleucyl-tRNA synthetase
著者Fukunaga, R, Fukai, S, Ishitani, R, Nureki, O, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-05-08
公開日2004-03-23
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structures of the CP1 domain from Thermus thermophilus isoleucyl-tRNA synthetase and its complex with L-valine.
J.Biol.Chem., 279, 2004
1UE0
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Isoleucyl-tRNA synthetase editing domain complexed with L-Valine
分子名称: Isoleucyl-tRNA synthetase, VALINE
著者Fukunaga, R, Fukai, S, Ishitani, R, Nureki, O, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-05-08
公開日2004-03-23
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structures of the CP1 domain from Thermus thermophilus isoleucyl-tRNA synthetase and its complex with L-valine.
J.Biol.Chem., 279, 2004
1WKB
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Crystal Structure of Leucyl-tRNA Synthetase from the Archaeon Pyrococcus horikoshii Reveals a Novel Editing Domain Orientation
分子名称: Leucyl-tRNA synthetase, SULFATE ION
著者Fukunaga, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-30
公開日2005-02-08
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Crystal Structure of Leucyl-tRNA Synthetase from the Archaeon Pyrococcus horikoshii Reveals a Novel Editing Domain Orientation
J.Mol.Biol., 346, 2005
1WK9
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Structural basis for non-cognate amino acid discrimination by the valyl-tRNA synthetase editing domain
分子名称: 5'-O-(N-(L-THREONYL)-SULFAMOYL)ADENOSINE, Valyl-tRNA synthetase
著者Fukunaga, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-30
公開日2005-06-28
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural Basis for Non-cognate Amino Acid Discrimination by the Valyl-tRNA Synthetase Editing Domain
J.Biol.Chem., 280, 2005
1WNY
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Isoleucyl-tRNA synthetase editing domain
分子名称: isoleucyl-trna synthetase
著者Fukunaga, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-08-11
公開日2005-10-25
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural basis for substrate recognition by the editing domain of isoleucyl-tRNA synthetase
J.Mol.Biol., 359, 2006
1WZ2
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The crystal structure of Leucyl-tRNA synthetase and tRNA(leucine) complex
分子名称: Leucyl-tRNA synthetase, tRNA
著者Fukunaga, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-02-21
公開日2005-09-06
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.21 Å)
主引用文献The crystal structure of Leucyl-tRNA synthetase and tRNA(leucine) complex
to be published
1WK8
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Isoleucyl-tRNA synthetase editing domain complexed with the pre-transfer editing substrate analogue, Val-AMS
分子名称: 5'O-[N-(L-VALYL)SULPHAMOYL]ADENOSINE, Isoleucyl-tRNA synthetase
著者Fukunaga, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-30
公開日2005-09-27
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural basis for substrate recognition by the editing domain of isoleucyl-tRNA synthetase
J.Mol.Biol., 359, 2006
1WKA
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Structural basis for non-cognate amino acid discrimination by the valyl-tRNA synthetase editing domain
分子名称: Valyl-tRNA synthetase
著者Fukunaga, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-30
公開日2005-06-28
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural Basis for Non-cognate Amino Acid Discrimination by the Valyl-tRNA Synthetase Editing Domain
J.Biol.Chem., 280, 2005
1WNZ
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Isoleucyl-tRNA synthetase editing domain complexed with the post-transfer editing substrate analogue, Val-2AA
分子名称: 2'-(L-VALYL)AMINO-2'-DEOXYADENOSINE, isoleucyl-trna synthetase
著者Fukunaga, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-08-11
公開日2005-10-25
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural basis for substrate recognition by the editing domain of isoleucyl-tRNA synthetase
J.Mol.Biol., 359, 2006
2DU3
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Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase complexed with tRNACys and O-phosphoserine
分子名称: O-phosphoseryl-tRNA synthetase, PHOSPHOSERINE, tRNA
著者Fukunaga, R.
登録日2006-07-20
公開日2007-03-13
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural insights into the first step of RNA-dependent cysteine biosynthesis in archaea.
Nat.Struct.Mol.Biol., 14, 2007
2DU7
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Crystal structure of Methanococcus jannacshii O-phosphoseryl-tRNA synthetase
分子名称: O-phosphoseryl-tRNA synthetase
著者Fukunaga, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-07-20
公開日2007-03-13
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Structural insights into the first step of RNA-dependent cysteine biosynthesis in archaea.
Nat.Struct.Mol.Biol., 14, 2007
2DU4
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Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase complexed with tRNACys
分子名称: O-phosphoseryl-tRNA synthetase, tRNA
著者Fukunaga, R.
登録日2006-07-20
公開日2007-03-13
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural insights into the first step of RNA-dependent cysteine biosynthesis in archaea.
Nat.Struct.Mol.Biol., 14, 2007
2DU5
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Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase E418N/E420N mutant complexed with tRNAOpal and O-phosphoserine ("opal complex")
分子名称: O-phosphoseryl-tRNA synthetase, PHOSPHOSERINE, tRNA
著者Fukunaga, R.
登録日2006-07-20
公開日2007-03-13
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structural insights into the first step of RNA-dependent cysteine biosynthesis in archaea.
Nat.Struct.Mol.Biol., 14, 2007
2E7I
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Crystal Structure of Sep-tRNA:Cys-tRNA Synthase from Archaeoglobus fulgidus
分子名称: PYRIDOXAL-5'-PHOSPHATE, SULFATE ION, Sep-tRNA:Cys-tRNA synthase
著者Fukunaga, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-01-10
公開日2007-07-17
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural Insights into the Second Step of RNA-dependent Cysteine Biosynthesis in Archaea: Crystal Structure of Sep-tRNA:Cys-tRNA Synthase from Archaeoglobus fulgidus
J.Mol.Biol., 370, 2007
2E1B
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Crystal structure of the AlaX-M trans-editing enzyme from Pyrococcus horikoshii
分子名称: 216aa long hypothetical alanyl-tRNA synthetase, ZINC ION
著者Fukunaga, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-10-20
公開日2007-03-06
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structure of the AlaX-M trans-editing enzyme from Pyrococcus horikoshii
ACTA CRYSTALLOGR.,SECT.D, 63, 2007
2DU6
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Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase E418N/E420N mutant complexed with tRNAAmber and O-phosphoserine ("amber complex")
分子名称: O-phosphoseryl-tRNA synthetase, PHOSPHOSERINE, tRNA
著者Fukunaga, R.
登録日2006-07-20
公開日2007-03-13
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Structural insights into the first step of RNA-dependent cysteine biosynthesis in archaea.
Nat.Struct.Mol.Biol., 14, 2007
2E7J
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BU of 2e7j by Molmil
Crystal Structure of Sep-tRNA:Cys-tRNA Synthase from Archaeoglobus fulgidus
分子名称: PYRIDOXAL-5'-PHOSPHATE, SULFATE ION, Sep-tRNA:Cys-tRNA synthase
著者Fukunaga, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-01-10
公開日2007-07-17
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural Insights into the Second Step of RNA-dependent Cysteine Biosynthesis in Archaea: Crystal Structure of Sep-tRNA:Cys-tRNA Synthase from Archaeoglobus fulgidus
J.Mol.Biol., 370, 2007
3WNC
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BU of 3wnc by Molmil
Crystal structure of EF-Pyl in complex with GDP
分子名称: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Protein translation elongation factor 1A
著者Yanagisawa, T, Ishii, R, Fukunaga, R, Sengoku, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2013-12-08
公開日2014-12-10
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献A SelB/EF-Tu/aIF2 gamma-like protein from Methanosarcina mazei in the GTP-bound form binds cysteinyl-tRNA(Cys.).
J. Struct. Funct. Genomics, 16, 2015
3WNB
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Crystal structure of EF-Pyl in complex with GMPPNP
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Protein translation elongation factor 1A
著者Yanagisawa, T, Ishii, R, Fukunaga, R, Sengoku, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2013-12-08
公開日2014-12-10
最終更新日2020-05-06
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献A SelB/EF-Tu/aIF2 gamma-like protein from Methanosarcina mazei in the GTP-bound form binds cysteinyl-tRNA(Cys.).
J. Struct. Funct. Genomics, 16, 2015
3WND
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Crystal structure of EF-Pyl
分子名称: CITRIC ACID, Protein translation elongation factor 1A
著者Yanagisawa, T, Ishii, R, Fukunaga, R, Sengoku, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2013-12-08
公開日2014-12-10
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献A SelB/EF-Tu/aIF2 gamma-like protein from Methanosarcina mazei in the GTP-bound form binds cysteinyl-tRNA(Cys.).
J. Struct. Funct. Genomics, 16, 2015
1WWR
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BU of 1wwr by Molmil
Crystal structure of tRNA adenosine deaminase TadA from Aquifex aeolicus
分子名称: ZINC ION, tRNA adenosine deaminase TadA
著者Kuratani, M, Ishii, R, Bessho, Y, Fukunaga, R, Sengoku, T, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-01-12
公開日2005-02-01
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of tRNA Adenosine Deaminase (TadA) from Aquifex aeolicus
J.Biol.Chem., 280, 2005
2ZTG
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Crystal structure of Archaeoglobus fulgidus alanyl-tRNA synthetase lacking the C-terminal dimerization domain in complex with Ala-SA
分子名称: '5'-O-(N-(L-ALANYL)-SULFAMOYL)ADENOSINE, Alanyl-tRNA synthetase, ZINC ION
著者Naganuma, M, Sekine, S, Fukunaga, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2008-10-01
公開日2009-06-30
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Unique protein architecture of alanyl-tRNA synthetase for aminoacylation, editing, and dimerization.
Proc.Natl.Acad.Sci.USA, 106, 2009
2ZVF
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Crystal structure of Archaeoglobus fulgidus alanyl-tRNA synthetase C-terminal dimerization domain
分子名称: Alanyl-tRNA synthetase, SULFATE ION
著者Naganuma, M, Sekine, S, Fukunaga, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2008-11-06
公開日2009-06-30
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Unique protein architecture of alanyl-tRNA synthetase for aminoacylation, editing, and dimerization.
Proc.Natl.Acad.Sci.USA, 106, 2009
2BYT
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Thermus thermophilus Leucyl-tRNA synthetase complexed with a tRNAleu transcript in the post-editing conformation
分子名称: LEUCINE, LEUCYL-TRNA SYNTHETASE, MERCURY (II) ION, ...
著者Cusack, S, Tukalo, M, Yaremchuk, A, Fukunaga, R, Yokoyama, S.
登録日2005-08-04
公開日2005-09-15
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献The Crystal Structure of Leucyl-tRNA Synthetase Complexed with tRNA(Leu) in the Post-Transfer-Editing Conformation.
Nat.Struct.Mol.Biol., 12, 2005
2BTE
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Thermus thermophilus Leucyl-tRNA synthetase complexed with a tRNAleu transcript in the post-editing conformation and a post- transfer editing substrate analogue
分子名称: 2'-AMINO-2'-DEOXYADENOSINE, AMINOACYL-TRNA SYNTHETASE, LEUCINE, ...
著者Cusack, S, Tukalo, M, Yaremchuk, A, Fukunaga, R, Yokoyama, S.
登録日2005-05-31
公開日2005-09-15
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献The Crystal Structure of Leucyl-tRNA Synthetase Complexed with tRNA(Leu) in the Post-Transfer- Editing Conformation.
Nat.Struct.Mol.Biol., 12, 2005

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