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PDB: 25 results

1UDZ
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Isoleucyl-tRNA synthetase editing domain
Descriptor: Isoleucyl-tRNA synthetase
Authors:Fukunaga, R, Fukai, S, Ishitani, R, Nureki, O, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-05-08
Release date:2004-03-23
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of the CP1 domain from Thermus thermophilus isoleucyl-tRNA synthetase and its complex with L-valine.
J.Biol.Chem., 279, 2004
1UE0
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Isoleucyl-tRNA synthetase editing domain complexed with L-Valine
Descriptor: Isoleucyl-tRNA synthetase, VALINE
Authors:Fukunaga, R, Fukai, S, Ishitani, R, Nureki, O, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2003-05-08
Release date:2004-03-23
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of the CP1 domain from Thermus thermophilus isoleucyl-tRNA synthetase and its complex with L-valine.
J.Biol.Chem., 279, 2004
1WK9
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Structural basis for non-cognate amino acid discrimination by the valyl-tRNA synthetase editing domain
Descriptor: 5'-O-(N-(L-THREONYL)-SULFAMOYL)ADENOSINE, Valyl-tRNA synthetase
Authors:Fukunaga, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-30
Release date:2005-06-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural Basis for Non-cognate Amino Acid Discrimination by the Valyl-tRNA Synthetase Editing Domain
J.Biol.Chem., 280, 2005
1WKB
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Crystal Structure of Leucyl-tRNA Synthetase from the Archaeon Pyrococcus horikoshii Reveals a Novel Editing Domain Orientation
Descriptor: Leucyl-tRNA synthetase, SULFATE ION
Authors:Fukunaga, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-30
Release date:2005-02-08
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal Structure of Leucyl-tRNA Synthetase from the Archaeon Pyrococcus horikoshii Reveals a Novel Editing Domain Orientation
J.Mol.Biol., 346, 2005
1WNY
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BU of 1wny by Molmil
Isoleucyl-tRNA synthetase editing domain
Descriptor: isoleucyl-trna synthetase
Authors:Fukunaga, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-08-11
Release date:2005-10-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural basis for substrate recognition by the editing domain of isoleucyl-tRNA synthetase
J.Mol.Biol., 359, 2006
1WZ2
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The crystal structure of Leucyl-tRNA synthetase and tRNA(leucine) complex
Descriptor: Leucyl-tRNA synthetase, tRNA
Authors:Fukunaga, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-02-21
Release date:2005-09-06
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.21 Å)
Cite:The crystal structure of Leucyl-tRNA synthetase and tRNA(leucine) complex
to be published
1WK8
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Isoleucyl-tRNA synthetase editing domain complexed with the pre-transfer editing substrate analogue, Val-AMS
Descriptor: 5'O-[N-(L-VALYL)SULPHAMOYL]ADENOSINE, Isoleucyl-tRNA synthetase
Authors:Fukunaga, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-30
Release date:2005-09-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis for substrate recognition by the editing domain of isoleucyl-tRNA synthetase
J.Mol.Biol., 359, 2006
1WKA
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Structural basis for non-cognate amino acid discrimination by the valyl-tRNA synthetase editing domain
Descriptor: Valyl-tRNA synthetase
Authors:Fukunaga, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-30
Release date:2005-06-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural Basis for Non-cognate Amino Acid Discrimination by the Valyl-tRNA Synthetase Editing Domain
J.Biol.Chem., 280, 2005
1WNZ
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Isoleucyl-tRNA synthetase editing domain complexed with the post-transfer editing substrate analogue, Val-2AA
Descriptor: 2'-(L-VALYL)AMINO-2'-DEOXYADENOSINE, isoleucyl-trna synthetase
Authors:Fukunaga, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-08-11
Release date:2005-10-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis for substrate recognition by the editing domain of isoleucyl-tRNA synthetase
J.Mol.Biol., 359, 2006
2DU3
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Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase complexed with tRNACys and O-phosphoserine
Descriptor: O-phosphoseryl-tRNA synthetase, PHOSPHOSERINE, tRNA
Authors:Fukunaga, R.
Deposit date:2006-07-20
Release date:2007-03-13
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural insights into the first step of RNA-dependent cysteine biosynthesis in archaea.
Nat.Struct.Mol.Biol., 14, 2007
2DU7
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Crystal structure of Methanococcus jannacshii O-phosphoseryl-tRNA synthetase
Descriptor: O-phosphoseryl-tRNA synthetase
Authors:Fukunaga, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-07-20
Release date:2007-03-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Structural insights into the first step of RNA-dependent cysteine biosynthesis in archaea.
Nat.Struct.Mol.Biol., 14, 2007
2DU4
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Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase complexed with tRNACys
Descriptor: O-phosphoseryl-tRNA synthetase, tRNA
Authors:Fukunaga, R.
Deposit date:2006-07-20
Release date:2007-03-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural insights into the first step of RNA-dependent cysteine biosynthesis in archaea.
Nat.Struct.Mol.Biol., 14, 2007
2DU5
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BU of 2du5 by Molmil
Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase E418N/E420N mutant complexed with tRNAOpal and O-phosphoserine ("opal complex")
Descriptor: O-phosphoseryl-tRNA synthetase, PHOSPHOSERINE, tRNA
Authors:Fukunaga, R.
Deposit date:2006-07-20
Release date:2007-03-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural insights into the first step of RNA-dependent cysteine biosynthesis in archaea.
Nat.Struct.Mol.Biol., 14, 2007
2DU6
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BU of 2du6 by Molmil
Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase E418N/E420N mutant complexed with tRNAAmber and O-phosphoserine ("amber complex")
Descriptor: O-phosphoseryl-tRNA synthetase, PHOSPHOSERINE, tRNA
Authors:Fukunaga, R.
Deposit date:2006-07-20
Release date:2007-03-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural insights into the first step of RNA-dependent cysteine biosynthesis in archaea.
Nat.Struct.Mol.Biol., 14, 2007
2E7I
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BU of 2e7i by Molmil
Crystal Structure of Sep-tRNA:Cys-tRNA Synthase from Archaeoglobus fulgidus
Descriptor: PYRIDOXAL-5'-PHOSPHATE, SULFATE ION, Sep-tRNA:Cys-tRNA synthase
Authors:Fukunaga, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-01-10
Release date:2007-07-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural Insights into the Second Step of RNA-dependent Cysteine Biosynthesis in Archaea: Crystal Structure of Sep-tRNA:Cys-tRNA Synthase from Archaeoglobus fulgidus
J.Mol.Biol., 370, 2007
2E7J
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BU of 2e7j by Molmil
Crystal Structure of Sep-tRNA:Cys-tRNA Synthase from Archaeoglobus fulgidus
Descriptor: PYRIDOXAL-5'-PHOSPHATE, SULFATE ION, Sep-tRNA:Cys-tRNA synthase
Authors:Fukunaga, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-01-10
Release date:2007-07-17
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural Insights into the Second Step of RNA-dependent Cysteine Biosynthesis in Archaea: Crystal Structure of Sep-tRNA:Cys-tRNA Synthase from Archaeoglobus fulgidus
J.Mol.Biol., 370, 2007
2E1B
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BU of 2e1b by Molmil
Crystal structure of the AlaX-M trans-editing enzyme from Pyrococcus horikoshii
Descriptor: 216aa long hypothetical alanyl-tRNA synthetase, ZINC ION
Authors:Fukunaga, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-10-20
Release date:2007-03-06
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of the AlaX-M trans-editing enzyme from Pyrococcus horikoshii
ACTA CRYSTALLOGR.,SECT.D, 63, 2007
3WNB
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BU of 3wnb by Molmil
Crystal structure of EF-Pyl in complex with GMPPNP
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Protein translation elongation factor 1A
Authors:Yanagisawa, T, Ishii, R, Fukunaga, R, Sengoku, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2013-12-08
Release date:2014-12-10
Last modified:2020-05-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A SelB/EF-Tu/aIF2 gamma-like protein from Methanosarcina mazei in the GTP-bound form binds cysteinyl-tRNA(Cys.).
J. Struct. Funct. Genomics, 16, 2015
3WND
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BU of 3wnd by Molmil
Crystal structure of EF-Pyl
Descriptor: CITRIC ACID, Protein translation elongation factor 1A
Authors:Yanagisawa, T, Ishii, R, Fukunaga, R, Sengoku, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2013-12-08
Release date:2014-12-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:A SelB/EF-Tu/aIF2 gamma-like protein from Methanosarcina mazei in the GTP-bound form binds cysteinyl-tRNA(Cys.).
J. Struct. Funct. Genomics, 16, 2015
3WNC
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BU of 3wnc by Molmil
Crystal structure of EF-Pyl in complex with GDP
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Protein translation elongation factor 1A
Authors:Yanagisawa, T, Ishii, R, Fukunaga, R, Sengoku, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2013-12-08
Release date:2014-12-10
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A SelB/EF-Tu/aIF2 gamma-like protein from Methanosarcina mazei in the GTP-bound form binds cysteinyl-tRNA(Cys.).
J. Struct. Funct. Genomics, 16, 2015
1WWR
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BU of 1wwr by Molmil
Crystal structure of tRNA adenosine deaminase TadA from Aquifex aeolicus
Descriptor: ZINC ION, tRNA adenosine deaminase TadA
Authors:Kuratani, M, Ishii, R, Bessho, Y, Fukunaga, R, Sengoku, T, Sekine, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-01-12
Release date:2005-02-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure of tRNA Adenosine Deaminase (TadA) from Aquifex aeolicus
J.Biol.Chem., 280, 2005
2ZVF
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BU of 2zvf by Molmil
Crystal structure of Archaeoglobus fulgidus alanyl-tRNA synthetase C-terminal dimerization domain
Descriptor: Alanyl-tRNA synthetase, SULFATE ION
Authors:Naganuma, M, Sekine, S, Fukunaga, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-11-06
Release date:2009-06-30
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Unique protein architecture of alanyl-tRNA synthetase for aminoacylation, editing, and dimerization.
Proc.Natl.Acad.Sci.USA, 106, 2009
2ZTG
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BU of 2ztg by Molmil
Crystal structure of Archaeoglobus fulgidus alanyl-tRNA synthetase lacking the C-terminal dimerization domain in complex with Ala-SA
Descriptor: '5'-O-(N-(L-ALANYL)-SULFAMOYL)ADENOSINE, Alanyl-tRNA synthetase, ZINC ION
Authors:Naganuma, M, Sekine, S, Fukunaga, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2008-10-01
Release date:2009-06-30
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Unique protein architecture of alanyl-tRNA synthetase for aminoacylation, editing, and dimerization.
Proc.Natl.Acad.Sci.USA, 106, 2009
2BTE
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BU of 2bte by Molmil
Thermus thermophilus Leucyl-tRNA synthetase complexed with a tRNAleu transcript in the post-editing conformation and a post- transfer editing substrate analogue
Descriptor: 2'-AMINO-2'-DEOXYADENOSINE, AMINOACYL-TRNA SYNTHETASE, LEUCINE, ...
Authors:Cusack, S, Tukalo, M, Yaremchuk, A, Fukunaga, R, Yokoyama, S.
Deposit date:2005-05-31
Release date:2005-09-15
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The Crystal Structure of Leucyl-tRNA Synthetase Complexed with tRNA(Leu) in the Post-Transfer- Editing Conformation.
Nat.Struct.Mol.Biol., 12, 2005
2BYT
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Thermus thermophilus Leucyl-tRNA synthetase complexed with a tRNAleu transcript in the post-editing conformation
Descriptor: LEUCINE, LEUCYL-TRNA SYNTHETASE, MERCURY (II) ION, ...
Authors:Cusack, S, Tukalo, M, Yaremchuk, A, Fukunaga, R, Yokoyama, S.
Deposit date:2005-08-04
Release date:2005-09-15
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:The Crystal Structure of Leucyl-tRNA Synthetase Complexed with tRNA(Leu) in the Post-Transfer-Editing Conformation.
Nat.Struct.Mol.Biol., 12, 2005

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