Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 71 results

3WNJ
DownloadVisualize
BU of 3wnj by Molmil
1.20 A resolution crystal structure of dioxygen bound copper-containing nitrite reductase from Geobacillus thermodenitrificans
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, ACETIC ACID, ...
Authors:Fukuda, Y, Inoue, T.
Deposit date:2013-12-10
Release date:2014-12-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystallographic evidence for side-on dioxygen trapped on type 2 copper in copper-containing nitrite reductase
To be Published
3WNI
DownloadVisualize
BU of 3wni by Molmil
1.50 A resolution crystal structure of dioxygen bound copper-containing nitrite reductase from Geobacillus thermodenitrificans
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETIC ACID, COPPER (II) ION, ...
Authors:Fukuda, Y, Inoue, T.
Deposit date:2013-12-10
Release date:2014-12-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystallographic evidence for side-on dioxygen trapped on type 2 copper in copper-containing nitrite reductase
To be Published
3X1G
DownloadVisualize
BU of 3x1g by Molmil
H294M mutant of copper-containing nitrite reductase from Geobacillus thermodenitrificans showing two coordination geometries at the T2Cu site
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETIC ACID, COPPER (II) ION, ...
Authors:Fukuda, Y, Inoue, T.
Deposit date:2014-11-16
Release date:2015-11-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Structural evidence of the flexibility of the CuM site
To be Published
3X1E
DownloadVisualize
BU of 3x1e by Molmil
Structure of copper-containing nitrite reductase from Geobacillus thermodenitrificans without chloride
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, Nitrite reductase, ...
Authors:Fukuda, Y, Inoue, T.
Deposit date:2014-11-16
Release date:2015-11-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Structural evidence of the flexibility of the CuM site
To be Published
3X1F
DownloadVisualize
BU of 3x1f by Molmil
H294M mutant of copper-containing nitrite reductase from Geobacillus thermodenitrificans
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETIC ACID, COPPER (II) ION, ...
Authors:Fukuda, Y, Inoue, T.
Deposit date:2014-11-16
Release date:2015-11-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Structural evidence of the flexibility of the CuM site
To be Published
3X1N
DownloadVisualize
BU of 3x1n by Molmil
Nitrite-bound thermostable copper nitrite reductase at 320 K
Descriptor: COPPER (II) ION, NITRITE ION, Nitrite reductase
Authors:Fukuda, Y, Inoue, T.
Deposit date:2014-11-25
Release date:2015-01-21
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:High-temperature and high-resolution crystallography of thermostable copper nitrite reductase.
Chem.Commun.(Camb.), 51, 2015
5X31
DownloadVisualize
BU of 5x31 by Molmil
Pseudoazurin from Alcaligenes faecalis (space group P65)
Descriptor: COPPER (II) ION, Pseudoazurin
Authors:Fukuda, Y, Mizohata, E, Inoue, T.
Deposit date:2017-02-03
Release date:2017-04-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:New molecular packing in a crystal of pseudoazurin from Alcaligenes faecalis: a double-helical arrangement of blue copper
Acta Crystallogr F Struct Biol Commun, 73, 2017
5YTL
DownloadVisualize
BU of 5ytl by Molmil
Crystal structure of Geobacillus thermodenitrificans copper-containing nitrite reductase determined with an anaerobically manipulated crystal
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, ACETIC ACID, ...
Authors:Fukuda, Y, Matsusaki, T, Tse, K.M, Mizohata, E, Murphy, M.E.P, Inoue, T.
Deposit date:2017-11-19
Release date:2018-08-22
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.401 Å)
Cite:Crystallographic study of dioxygen chemistry in a copper-containing nitrite reductase from Geobacillus thermodenitrificans.
Acta Crystallogr D Struct Biol, 74, 2018
5YTN
DownloadVisualize
BU of 5ytn by Molmil
C135A mutant of copper-containing nitrite reductase from Geobacillus thermodenitrificans in complex with peroxide
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, COPPER (II) ION, Copper-containing nitrite reductase, ...
Authors:Fukuda, Y, Matsusaki, T, Tse, K.M, Mizohata, E, Murphy, M.E.P, Inoue, T.
Deposit date:2017-11-19
Release date:2018-08-22
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystallographic study of dioxygen chemistry in a copper-containing nitrite reductase from Geobacillus thermodenitrificans.
Acta Crystallogr D Struct Biol, 74, 2018
5YTM
DownloadVisualize
BU of 5ytm by Molmil
C135A mutant of copper-containing nitrite reductase from Geobacillus thermodenitrificans determined by in-ouse source
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, ACETIC ACID, COPPER (II) ION, ...
Authors:Fukuda, Y, Matsusaki, T, Tse, K.M, Mizohata, E, Murphy, M.E.P, Inoue, T.
Deposit date:2017-11-19
Release date:2018-08-22
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystallographic study of dioxygen chemistry in a copper-containing nitrite reductase from Geobacillus thermodenitrificans.
Acta Crystallogr D Struct Biol, 74, 2018
3WKP
DownloadVisualize
BU of 3wkp by Molmil
C135A mutant of Geobacillus thermodenitrificans copper-containing nitrite reductase in complex with nitrite
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Fukuda, Y, Inoue, T.
Deposit date:2013-10-29
Release date:2013-12-11
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:C135A mutant of Geobacillus thermodenitrificans copper-containing nitrite reductase in complex with nitrite
to be published
3WIA
DownloadVisualize
BU of 3wia by Molmil
Crystal structure of the N-terminal 1-37 residues deleted mutant of Geobacillus copper nitrite reductase
Descriptor: COPPER (II) ION, FORMIC ACID, Nitrite reductase
Authors:Fukuda, Y, Nojiri, M.
Deposit date:2013-09-09
Release date:2014-07-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structural and functional characterization of the Geobacillus copper nitrite reductase: involvement of the unique N-terminal region in the interprotein electron transfer with its redox partner
Biochim.Biophys.Acta, 1837, 2014
7DF2
DownloadVisualize
BU of 7df2 by Molmil
Crystal structure of a C2 domain protein from Ramazzottius varieornatus
Descriptor: C2 domain protein, CALCIUM ION, beta-D-glucopyranose-(1-1)-alpha-D-glucopyranose
Authors:Fukuda, Y, Inoue, T.
Deposit date:2020-11-06
Release date:2020-12-09
Last modified:2021-03-03
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural insights into a C2 domain protein specifically found in tardigrades.
Protein Sci., 30, 2021
4URL
DownloadVisualize
BU of 4url by Molmil
Crystal Structure of Staph ParE43kDa in complex with KBD
Descriptor: (1R,4aS,5S,6S,8aR)-5-{[(5S)-1-(3-O-acetyl-4-O-carbamoyl-6-deoxy-2-O-methyl-alpha-L-talopyranosyl)-4-hydroxy-2-oxo-5-(propan-2-yl)-2,5-dihydro-1H-pyrrol-3-yl]carbonyl}-6-methyl-4-methylidene-1,2,3,4,4a,5,6,8a-octahydronaphthalen-1-yl 2,6-dideoxy-3-C-[(1S)-1-{[(3,4-dichloro-5-methyl-1H-pyrrol-2-yl)carbonyl]amino}ethyl]-beta-D-ribo-hexopyranoside, DNA TOPOISOMERASE IV, B SUBUNIT
Authors:Lu, J, Patel, S, Sharma, N, Soisson, S, Kishii, R, Takei, M, Fukuda, Y, Lumb, K.J, Singh, S.B.
Deposit date:2014-06-30
Release date:2014-07-16
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Structures of Kibdelomycin Bound to Staphylococcus Aureus Gyrb and Pare Showed a Novel U-Shaped Binding Mode.
Acs Chem.Biol., 9, 2014
4URN
DownloadVisualize
BU of 4urn by Molmil
Crystal Structure of Staph ParE 24kDa in complex with Novobiocin
Descriptor: DNA TOPOISOMERASE IV, B SUBUNIT, NOVOBIOCIN
Authors:Lu, J, Patel, S, Sharma, N, Soisson, S, Kishii, R, Takei, M, Fukuda, Y, Lumb, K.J, Singh, S.B.
Deposit date:2014-07-01
Release date:2014-07-16
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of Kibdelomycin Bound to Staphylococcus Aureus Gyrb and Pare Showed a Novel U-Shaped Binding Mode.
Acs Chem.Biol., 9, 2014
4URO
DownloadVisualize
BU of 4uro by Molmil
Crystal Structure of Staph GyraseB 24kDa in complex with Novobiocin
Descriptor: DNA GYRASE SUBUNIT B, NOVOBIOCIN
Authors:Lu, J, Patel, S, Sharma, N, Soisson, S, Kishii, R, Takei, M, Fukuda, Y, Lumb, K.J, Singh, S.B.
Deposit date:2014-07-01
Release date:2014-07-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.59 Å)
Cite:Structures of Kibdelomycin Bound to Staphylococcus Aureus Gyrb and Pare Showed a Novel U-Shaped Binding Mode.
Acs Chem.Biol., 9, 2014
4URM
DownloadVisualize
BU of 4urm by Molmil
Crystal Structure of Staph GyraseB 24kDa in complex with Kibdelomycin
Descriptor: (1R,4aS,5S,6S,8aR)-5-{[(5S)-1-(3-O-acetyl-4-O-carbamoyl-6-deoxy-2-O-methyl-alpha-L-talopyranosyl)-4-hydroxy-2-oxo-5-(propan-2-yl)-2,5-dihydro-1H-pyrrol-3-yl]carbonyl}-6-methyl-4-methylidene-1,2,3,4,4a,5,6,8a-octahydronaphthalen-1-yl 2,6-dideoxy-3-C-[(1S)-1-{[(3,4-dichloro-5-methyl-1H-pyrrol-2-yl)carbonyl]amino}ethyl]-beta-D-ribo-hexopyranoside, DNA GYRASE SUBUNIT B
Authors:Lu, J, Patel, S, Sharma, N, Soisson, S, Kishii, R, Takei, M, Fukuda, Y, Lumb, K.J, Singh, S.B.
Deposit date:2014-06-30
Release date:2014-07-30
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.94 Å)
Cite:Structures of Kibdelomycin Bound to Staphylococcus Aureus Gyrb and Pare Showed a Novel U-Shaped Binding Mode.
Acs Chem.Biol., 9, 2014
8W9K
DownloadVisualize
BU of 8w9k by Molmil
Structure of apo RvY_06210
Descriptor: RvY_06210
Authors:Kato, S, Fukuda, Y, Inoue, T.
Deposit date:2023-09-05
Release date:2024-09-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Metabolite phosphatase from anhydrobiotic tardigrades
To Be Published
8WAI
DownloadVisualize
BU of 8wai by Molmil
Structure of RvY_06210 at 1.45 angstrom resolution
Descriptor: 1,2-ETHANEDIOL, RvY_06210, ZINC ION
Authors:Kato, S, Fukuda, Y, Inoue, T.
Deposit date:2023-09-07
Release date:2024-09-11
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Metabolite phosphatase from anhydrobiotic tardigrades
To Be Published
7BWH
DownloadVisualize
BU of 7bwh by Molmil
Soluble cytochrome b5 from Ramazzottius varieornatus
Descriptor: CHLORIDE ION, Cytochrome b5 heme-binding domain-containing protein, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kim, J, Inoue, T, Fukuda, Y.
Deposit date:2020-04-14
Release date:2020-06-10
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structure of cytochrome b5unique to tardigrades.
Protein Sci., 29, 2020
5YZD
DownloadVisualize
BU of 5yzd by Molmil
Crystal structure of the prefusion form of measles virus fusion protein in complex with a fusion inhibitor peptide (FIP)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, glycoprotein F1,measles virus fusion protein, ...
Authors:Hashiguchi, T, Fukuda, Y, Matsuoka, R, Kuroda, D, Kubota, M, Shirogane, Y, Watanabe, S, Tsumoto, K, Kohda, D, Plemper, R.K, Yanagi, Y.
Deposit date:2017-12-14
Release date:2018-02-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.636 Å)
Cite:Structures of the prefusion form of measles virus fusion protein in complex with inhibitors.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5YZC
DownloadVisualize
BU of 5yzc by Molmil
Crystal structure of the prefusion form of measles virus fusion protein in complex with a fusion inhibitor compound (AS-48)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4-nitro-2-[(phenylacetyl)amino]benzamide, ...
Authors:Hashiguchi, T, Fukuda, Y, Matsuoka, R, Kuroda, D, Kubota, M, Shirogane, Y, Watanabe, S, Tsumoto, K, Kohda, D, Plemper, R.K, Yanagi, Y.
Deposit date:2017-12-14
Release date:2018-02-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.334 Å)
Cite:Structures of the prefusion form of measles virus fusion protein in complex with inhibitors.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
7VEL
DownloadVisualize
BU of 7vel by Molmil
Crystal structure of Phytolacca americana UGT3 with UDP-2fluoroglucose
Descriptor: 1,2-ETHANEDIOL, 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, Glycosyltransferase, ...
Authors:Maharjan, R, Fukuda, Y, Nakayama, T, Nakayama, T, Hamada, H, Ozaki, S, Inoue, T.
Deposit date:2021-09-09
Release date:2022-03-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural basis for substrate recognition in the Phytolacca americana glycosyltransferase PaGT3.
Acta Crystallogr D Struct Biol, 78, 2022
7VEJ
DownloadVisualize
BU of 7vej by Molmil
Crystal structure of Phytolacca americana UGT3 with kaempferol and UDP-2fluoroglucose
Descriptor: 1,2-ETHANEDIOL, 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, 3,5,7-TRIHYDROXY-2-(4-HYDROXYPHENYL)-4H-CHROMEN-4-ONE, ...
Authors:Maharjan, R, Fukuda, Y, Nakayama, T, Nakayama, T, Hamada, H, Ozaki, S, Inoue, T.
Deposit date:2021-09-09
Release date:2022-03-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural basis for substrate recognition in the Phytolacca americana glycosyltransferase PaGT3.
Acta Crystallogr D Struct Biol, 78, 2022
7VEK
DownloadVisualize
BU of 7vek by Molmil
Crystal structure of Phytolacca americana UGT3 with capsaicin and UDP-2fluoroglucose
Descriptor: (6E)-N-(4-hydroxy-3-methoxybenzyl)-8-methylnon-6-enamide, 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE, Glycosyltransferase, ...
Authors:Maharjan, R, Fukuda, Y, Nakayama, T, Nakayama, T, Hamada, H, Ozaki, S, Inoue, T.
Deposit date:2021-09-09
Release date:2022-03-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for substrate recognition in the Phytolacca americana glycosyltransferase PaGT3.
Acta Crystallogr D Struct Biol, 78, 2022

224931

건을2024-09-11부터공개중

PDB statisticsPDBj update infoContact PDBjnumon