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PDB: 71 件
5YTN
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C135A mutant of copper-containing nitrite reductase from Geobacillus thermodenitrificans in complex with peroxide
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, COPPER (II) ION, Copper-containing nitrite reductase, ...
著者Fukuda, Y, Matsusaki, T, Tse, K.M, Mizohata, E, Murphy, M.E.P, Inoue, T.
登録日2017-11-19
公開日2018-08-22
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystallographic study of dioxygen chemistry in a copper-containing nitrite reductase from Geobacillus thermodenitrificans.
Acta Crystallogr D Struct Biol, 74, 2018
5YTM
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C135A mutant of copper-containing nitrite reductase from Geobacillus thermodenitrificans determined by in-ouse source
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, ACETIC ACID, COPPER (II) ION, ...
著者Fukuda, Y, Matsusaki, T, Tse, K.M, Mizohata, E, Murphy, M.E.P, Inoue, T.
登録日2017-11-19
公開日2018-08-22
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystallographic study of dioxygen chemistry in a copper-containing nitrite reductase from Geobacillus thermodenitrificans.
Acta Crystallogr D Struct Biol, 74, 2018
5Z4G
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Crystal structure of secretory abundant heat soluble protein 4 from Ramazzottius varieornatus
分子名称: SAHS4, TETRAETHYLENE GLYCOL, TRIETHYLENE GLYCOL, ...
著者Fukuda, Y, Inoue, T.
登録日2018-01-11
公開日2018-04-11
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structure of secretory abundant heat soluble protein 4 from one of the toughest "water bears" micro-animals Ramazzottius Varieornatus
Protein Sci., 27, 2018
3WKP
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BU of 3wkp by Molmil
C135A mutant of Geobacillus thermodenitrificans copper-containing nitrite reductase in complex with nitrite
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, DI(HYDROXYETHYL)ETHER, ...
著者Fukuda, Y, Inoue, T.
登録日2013-10-29
公開日2013-12-11
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.901 Å)
主引用文献C135A mutant of Geobacillus thermodenitrificans copper-containing nitrite reductase in complex with nitrite
to be published
3WIA
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BU of 3wia by Molmil
Crystal structure of the N-terminal 1-37 residues deleted mutant of Geobacillus copper nitrite reductase
分子名称: COPPER (II) ION, FORMIC ACID, Nitrite reductase
著者Fukuda, Y, Nojiri, M.
登録日2013-09-09
公開日2014-07-23
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Structural and functional characterization of the Geobacillus copper nitrite reductase: involvement of the unique N-terminal region in the interprotein electron transfer with its redox partner
Biochim.Biophys.Acta, 1837, 2014
3WI9
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BU of 3wi9 by Molmil
Crystal structure of copper nitrite reductase from Geobacillus kaustophilus
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETIC ACID, COPPER (II) ION, ...
著者Fukuda, Y, Nojiri, M.
登録日2013-09-09
公開日2014-07-23
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Structural and functional characterization of the Geobacillus copper nitrite reductase: involvement of the unique N-terminal region in the interprotein electron transfer with its redox partner
Biochim.Biophys.Acta, 1837, 2014
3WKQ
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BU of 3wkq by Molmil
Copper-containing nitrite reductase from Geobacillus thermodenitrificans in complex with formate
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, COPPER (II) ION, ...
著者Fukuda, Y, Inoue, T.
登録日2013-10-29
公開日2013-12-11
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Copper-containing nitrite reductase from Geobacillus thermodenitrificans in complex with formate
to be published
3WNJ
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1.20 A resolution crystal structure of dioxygen bound copper-containing nitrite reductase from Geobacillus thermodenitrificans
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, ACETIC ACID, ...
著者Fukuda, Y, Inoue, T.
登録日2013-12-10
公開日2014-12-10
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Crystallographic evidence for side-on dioxygen trapped on type 2 copper in copper-containing nitrite reductase
To be Published
3WNI
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1.50 A resolution crystal structure of dioxygen bound copper-containing nitrite reductase from Geobacillus thermodenitrificans
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETIC ACID, COPPER (II) ION, ...
著者Fukuda, Y, Inoue, T.
登録日2013-12-10
公開日2014-12-10
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystallographic evidence for side-on dioxygen trapped on type 2 copper in copper-containing nitrite reductase
To be Published
3X1E
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BU of 3x1e by Molmil
Structure of copper-containing nitrite reductase from Geobacillus thermodenitrificans without chloride
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, Nitrite reductase, ...
著者Fukuda, Y, Inoue, T.
登録日2014-11-16
公開日2015-11-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Structural evidence of the flexibility of the CuM site
To be Published
3X1G
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BU of 3x1g by Molmil
H294M mutant of copper-containing nitrite reductase from Geobacillus thermodenitrificans showing two coordination geometries at the T2Cu site
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETIC ACID, COPPER (II) ION, ...
著者Fukuda, Y, Inoue, T.
登録日2014-11-16
公開日2015-11-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Structural evidence of the flexibility of the CuM site
To be Published
3X1F
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BU of 3x1f by Molmil
H294M mutant of copper-containing nitrite reductase from Geobacillus thermodenitrificans
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETIC ACID, COPPER (II) ION, ...
著者Fukuda, Y, Inoue, T.
登録日2014-11-16
公開日2015-11-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Structural evidence of the flexibility of the CuM site
To be Published
3X1N
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BU of 3x1n by Molmil
Nitrite-bound thermostable copper nitrite reductase at 320 K
分子名称: COPPER (II) ION, NITRITE ION, Nitrite reductase
著者Fukuda, Y, Inoue, T.
登録日2014-11-25
公開日2015-01-21
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献High-temperature and high-resolution crystallography of thermostable copper nitrite reductase.
Chem.Commun.(Camb.), 51, 2015
4URL
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BU of 4url by Molmil
Crystal Structure of Staph ParE43kDa in complex with KBD
分子名称: (1R,4aS,5S,6S,8aR)-5-{[(5S)-1-(3-O-acetyl-4-O-carbamoyl-6-deoxy-2-O-methyl-alpha-L-talopyranosyl)-4-hydroxy-2-oxo-5-(propan-2-yl)-2,5-dihydro-1H-pyrrol-3-yl]carbonyl}-6-methyl-4-methylidene-1,2,3,4,4a,5,6,8a-octahydronaphthalen-1-yl 2,6-dideoxy-3-C-[(1S)-1-{[(3,4-dichloro-5-methyl-1H-pyrrol-2-yl)carbonyl]amino}ethyl]-beta-D-ribo-hexopyranoside, DNA TOPOISOMERASE IV, B SUBUNIT
著者Lu, J, Patel, S, Sharma, N, Soisson, S, Kishii, R, Takei, M, Fukuda, Y, Lumb, K.J, Singh, S.B.
登録日2014-06-30
公開日2014-07-16
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.29 Å)
主引用文献Structures of Kibdelomycin Bound to Staphylococcus Aureus Gyrb and Pare Showed a Novel U-Shaped Binding Mode.
Acs Chem.Biol., 9, 2014
4URN
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BU of 4urn by Molmil
Crystal Structure of Staph ParE 24kDa in complex with Novobiocin
分子名称: DNA TOPOISOMERASE IV, B SUBUNIT, NOVOBIOCIN
著者Lu, J, Patel, S, Sharma, N, Soisson, S, Kishii, R, Takei, M, Fukuda, Y, Lumb, K.J, Singh, S.B.
登録日2014-07-01
公開日2014-07-16
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structures of Kibdelomycin Bound to Staphylococcus Aureus Gyrb and Pare Showed a Novel U-Shaped Binding Mode.
Acs Chem.Biol., 9, 2014
4URO
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BU of 4uro by Molmil
Crystal Structure of Staph GyraseB 24kDa in complex with Novobiocin
分子名称: DNA GYRASE SUBUNIT B, NOVOBIOCIN
著者Lu, J, Patel, S, Sharma, N, Soisson, S, Kishii, R, Takei, M, Fukuda, Y, Lumb, K.J, Singh, S.B.
登録日2014-07-01
公開日2014-07-30
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.59 Å)
主引用文献Structures of Kibdelomycin Bound to Staphylococcus Aureus Gyrb and Pare Showed a Novel U-Shaped Binding Mode.
Acs Chem.Biol., 9, 2014
4URM
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BU of 4urm by Molmil
Crystal Structure of Staph GyraseB 24kDa in complex with Kibdelomycin
分子名称: (1R,4aS,5S,6S,8aR)-5-{[(5S)-1-(3-O-acetyl-4-O-carbamoyl-6-deoxy-2-O-methyl-alpha-L-talopyranosyl)-4-hydroxy-2-oxo-5-(propan-2-yl)-2,5-dihydro-1H-pyrrol-3-yl]carbonyl}-6-methyl-4-methylidene-1,2,3,4,4a,5,6,8a-octahydronaphthalen-1-yl 2,6-dideoxy-3-C-[(1S)-1-{[(3,4-dichloro-5-methyl-1H-pyrrol-2-yl)carbonyl]amino}ethyl]-beta-D-ribo-hexopyranoside, DNA GYRASE SUBUNIT B
著者Lu, J, Patel, S, Sharma, N, Soisson, S, Kishii, R, Takei, M, Fukuda, Y, Lumb, K.J, Singh, S.B.
登録日2014-06-30
公開日2014-07-30
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.94 Å)
主引用文献Structures of Kibdelomycin Bound to Staphylococcus Aureus Gyrb and Pare Showed a Novel U-Shaped Binding Mode.
Acs Chem.Biol., 9, 2014
7X6H
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BU of 7x6h by Molmil
Outer membrane lipoprotein QseG of Escherichia coli O157:H7
分子名称: Quorum-sensing regulator protein G
著者Matsumoto, K, Fukuda, Y, Inoue, T.
登録日2022-03-07
公開日2023-03-15
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structures of QseE and QseG: elements of a three-component system from Escherichia coli.
Acta Crystallogr.,Sect.F, 79, 2023
7X6F
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BU of 7x6f by Molmil
Outer membrane lipoprotein QseG of Escherichia coli O157:H7
分子名称: 1,2-ETHANEDIOL, ACETATE ION, CITRATE ANION, ...
著者Matsumoto, K, Fukuda, Y, Inoue, T.
登録日2022-03-07
公開日2023-03-15
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structures of QseE and QseG: elements of a three-component system from Escherichia coli.
Acta Crystallogr.,Sect.F, 79, 2023
7X6G
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BU of 7x6g by Molmil
Outer membrane lipoprotein QseG of Escherichia coli O157:H7
分子名称: Quorum-sensing regulator protein G
著者Matsumoto, K, Fukuda, Y, Inoue, T.
登録日2022-03-07
公開日2023-03-15
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Crystal structures of QseE and QseG: elements of a three-component system from Escherichia coli.
Acta Crystallogr.,Sect.F, 79, 2023
8W9K
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BU of 8w9k by Molmil
Structure of apo RvY_06210
分子名称: RvY_06210
著者Kato, S, Fukuda, Y, Inoue, T.
登録日2023-09-05
公開日2024-09-11
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Metabolite phosphatase from anhydrobiotic tardigrades
To Be Published
8WAI
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BU of 8wai by Molmil
Structure of RvY_06210 at 1.45 angstrom resolution
分子名称: 1,2-ETHANEDIOL, RvY_06210, ZINC ION
著者Kato, S, Fukuda, Y, Inoue, T.
登録日2023-09-07
公開日2024-09-11
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Metabolite phosphatase from anhydrobiotic tardigrades
To Be Published
7BWH
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BU of 7bwh by Molmil
Soluble cytochrome b5 from Ramazzottius varieornatus
分子名称: CHLORIDE ION, Cytochrome b5 heme-binding domain-containing protein, PROTOPORPHYRIN IX CONTAINING FE
著者Kim, J, Inoue, T, Fukuda, Y.
登録日2020-04-14
公開日2020-06-10
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structure of cytochrome b5unique to tardigrades.
Protein Sci., 29, 2020
8J81
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BU of 8j81 by Molmil
MDM2 bound with a peptoid
分子名称: (2S)-2-[[(2S)-2-[(6-chloranyl-1H-indol-3-yl)methyl-[(2S)-2-[[(2S)-2-[ethanoyl-(phenylmethyl)amino]propanoyl]-methyl-amino]propanoyl]amino]propanoyl]-methyl-amino]-N-(3,3-dimethylbutyl)-N-[(2S)-1-oxidanylidene-1-piperazin-1-yl-propan-2-yl]propanamide, CHLORIDE ION, E3 ubiquitin-protein ligase Mdm2
著者Yokomine, M, Fukuda, Y, Ago, H, Matsuura, H, Ueno, G, Nagatoishi, S, Yamamoto, M, Tsumoto, K, Jumpei, M, Sando, S.
登録日2023-04-28
公開日2024-05-01
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献A structural and physicochemical study of how a peptoid binds to a protein
To Be Published
8JWD
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BU of 8jwd by Molmil
Histidine kinase QseE sensor domain of Escherichia coli O157:H7
分子名称: 1,2-ETHANEDIOL, histidine kinase
著者Matsumoto, K, Fukuda, Y, Inoue, T.
登録日2023-06-28
公開日2023-11-15
実験手法X-RAY DIFFRACTION (1.33 Å)
主引用文献Crystal structures of QseE and QseG: elements of a three-component system from Escherichia coli.
Acta Crystallogr.,Sect.F, 79, 2023

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件を2024-10-09に公開中

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