6M2H
| A reaction intermediate of sirohydrochlorin nickelochelatase CfbA in complex with Ni2+ and sirohydrochlorin | Descriptor: | 3,3',3'',3'''-[(7S,8S,12S,13S)-3,8,13,17-tetrakis(carboxymethyl)-8,13-dimethyl-7,8,12,13-tetrahydroporphyrin-2,7,12,18-tetrayl]tetrapropanoic acid, NICKEL (II) ION, Sirohydrochlorin cobaltochelatase | Authors: | Fujishiro, T. | Deposit date: | 2020-02-27 | Release date: | 2021-01-13 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (3.1 Å) | Cite: | The nickel-sirohydrochlorin formation mechanism of the ancestral class II chelatase CfbA in coenzyme F430 biosynthesis. Chem Sci, 12, 2021
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6M2G
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6M26
| Sirohydrochlorin nickelochelatase CfbA in P212121 space group | Descriptor: | Sirohydrochlorin cobaltochelatase | Authors: | Fujishiro, T. | Deposit date: | 2020-02-26 | Release date: | 2021-01-13 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.61 Å) | Cite: | The nickel-sirohydrochlorin formation mechanism of the ancestral class II chelatase CfbA in coenzyme F430 biosynthesis. Chem Sci, 12, 2021
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6M29
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6M25
| Sirohydrochlorin nickelochelatase CfbA in P41 space group | Descriptor: | Sirohydrochlorin cobaltochelatase | Authors: | Fujishiro, T. | Deposit date: | 2020-02-26 | Release date: | 2021-01-13 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | The nickel-sirohydrochlorin formation mechanism of the ancestral class II chelatase CfbA in coenzyme F430 biosynthesis. Chem Sci, 12, 2021
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6M27
| Sirohydrochlorin nickelochelatase CfbA in complex with Ni2+ | Descriptor: | NICKEL (II) ION, Sirohydrochlorin cobaltochelatase | Authors: | Fujishiro, T. | Deposit date: | 2020-02-26 | Release date: | 2021-01-13 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | The nickel-sirohydrochlorin formation mechanism of the ancestral class II chelatase CfbA in coenzyme F430 biosynthesis. Chem Sci, 12, 2021
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6M2A
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6M2E
| Sirohydrochlorin nickelochelatase CfbA in complex with sirohydrochlorin | Descriptor: | 3,3',3'',3'''-[(7S,8S,12S,13S)-3,8,13,17-tetrakis(carboxymethyl)-8,13-dimethyl-7,8,12,13-tetrahydroporphyrin-2,7,12,18-tetrayl]tetrapropanoic acid, Sirohydrochlorin cobaltochelatase | Authors: | Fujishiro, T. | Deposit date: | 2020-02-27 | Release date: | 2021-01-13 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | The nickel-sirohydrochlorin formation mechanism of the ancestral class II chelatase CfbA in coenzyme F430 biosynthesis. Chem Sci, 12, 2021
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6M2F
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3VM4
| Cytochrome P450SP alpha (CYP152B1) in complex with (R)-ibuprophen | Descriptor: | (2R)-2-[4-(2-methylpropyl)phenyl]propanoic acid, (4R)-2-METHYLPENTANE-2,4-DIOL, Fatty acid alpha-hydroxylase, ... | Authors: | Fujishiro, T, Shoji, O, Nagano, S, Sugimoto, H, Shiro, Y, Watanabe, Y. | Deposit date: | 2011-12-08 | Release date: | 2012-05-09 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.94 Å) | Cite: | Chiral-substrate-assisted stereoselective epoxidation catalyzed by H2O2-dependent cytochrome P450SP alpha Chem Asian J, 7, 2012
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5WT6
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5WT5
| L-homocysteine-bound NifS from Helicobacter pylori | Descriptor: | 2-AMINO-4-MERCAPTO-BUTYRIC ACID, Cysteine desulfurase IscS, ISOPROPYL ALCOHOL | Authors: | Fujishiro, T, Takahashi, Y. | Deposit date: | 2016-12-09 | Release date: | 2017-12-13 | Last modified: | 2024-03-06 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structural snapshot of cysteine desulfurase NifS with L-cysteine in initiation of catalysis to be published
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3WSG
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3WSD
| Oxidized HcgD from Methanocaldococcus jannaschii | Descriptor: | CHLORIDE ION, FE (III) ION, Putative GTP cyclohydrolase 1 type 2 | Authors: | Fujishiro, T, Ermler, U, Shima, S. | Deposit date: | 2014-03-13 | Release date: | 2014-08-27 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | A possible iron delivery function of the dinuclear iron center of HcgD in [Fe]-hydrogenase cofactor biosynthesis Febs Lett., 588, 2014
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3WV9
| Guanylylpyridinol (GP)- and ATP-bound HcgE from Methanothermobacter marburgensis | Descriptor: | 5'-O-[(S)-{[2-(carboxymethyl)-6-hydroxy-3,5-dimethylpyridin-4-yl]oxy}(hydroxy)phosphoryl]guanosine, ADENOSINE-5'-TRIPHOSPHATE, Hmd co-occurring protein HcgE, ... | Authors: | Fujishiro, T, Ermler, U, Shima, S. | Deposit date: | 2014-05-16 | Release date: | 2015-04-29 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.75 Å) | Cite: | Protein-pyridinol thioester precursor for biosynthesis of the organometallic acyl-iron ligand in [Fe]-hydrogenase cofactor Nat Commun, 6, 2015
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3WSE
| Reduced HcgD from Methanocaldococcus jannaschii | Descriptor: | FE (II) ION, PHOSPHATE ION, Putative GTP cyclohydrolase 1 type 2 | Authors: | Fujishiro, T, Ermler, U, Shima, S. | Deposit date: | 2014-03-13 | Release date: | 2014-08-27 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | A possible iron delivery function of the dinuclear iron center of HcgD in [Fe]-hydrogenase cofactor biosynthesis Febs Lett., 588, 2014
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3WSF
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3WSH
| EDTA-treated, oxidized HcgD from Methanocaldococcus jannaschii | Descriptor: | FE (III) ION, Putative GTP cyclohydrolase 1 type 2, SULFATE ION | Authors: | Fujishiro, T, Ermler, U, Shima, S. | Deposit date: | 2014-03-13 | Release date: | 2014-08-27 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | A possible iron delivery function of the dinuclear iron center of HcgD in [Fe]-hydrogenase cofactor biosynthesis Febs Lett., 588, 2014
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5ZT8
| SirB from Bacillus subtilis | Descriptor: | Sirohydrochlorin ferrochelatase | Authors: | Fujishiro, T. | Deposit date: | 2018-05-02 | Release date: | 2019-02-27 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structure of sirohydrochlorin ferrochelatase SirB: the last of the structures of the class II chelatase family. Dalton Trans, 48, 2019
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3WSI
| EDTA-treated, reduced HcgD from Methanocaldococcus jannaschii | Descriptor: | FE (II) ION, PHOSPHATE ION, Putative GTP cyclohydrolase 1 type 2 | Authors: | Fujishiro, T, Ermler, U, Shima, S. | Deposit date: | 2014-03-13 | Release date: | 2014-08-27 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | A possible iron delivery function of the dinuclear iron center of HcgD in [Fe]-hydrogenase cofactor biosynthesis Febs Lett., 588, 2014
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5ZTA
| SirB from Bacillus subtilis with Fe3+ | Descriptor: | FE (III) ION, Sirohydrochlorin ferrochelatase | Authors: | Fujishiro, T. | Deposit date: | 2018-05-02 | Release date: | 2019-06-12 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (3.07 Å) | Cite: | A route for metal acquisition for chelatase reaction catalyzed by SirB from Bacillus subtilis To be published
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5ZT7
| SirB from Bacillus subtilis with Co2+ | Descriptor: | COBALT (II) ION, Sirohydrochlorin ferrochelatase | Authors: | Fujishiro, T. | Deposit date: | 2018-05-02 | Release date: | 2019-02-27 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (2.94 Å) | Cite: | Structure of sirohydrochlorin ferrochelatase SirB: the last of the structures of the class II chelatase family. Dalton Trans, 48, 2019
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5ZT9
| SirB from Bacillus subtilis with Ni2+ | Descriptor: | NICKEL (II) ION, Sirohydrochlorin ferrochelatase | Authors: | Fujishiro, T. | Deposit date: | 2018-05-02 | Release date: | 2019-06-12 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | A route for metal acquisition for chelatase reaction catalyzed by SirB from Bacillus subtilis To be published
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3VOO
| Cytochrome P450SP alpha (CYP152B1) mutant A245E | Descriptor: | Fatty acid alpha-hydroxylase, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Fujishiro, T, Shoji, O, Sugimoto, H, Shiro, Y, Watanabe, Y. | Deposit date: | 2012-01-31 | Release date: | 2013-02-06 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.34 Å) | Cite: | A substrate-binding-state mimic of H2O2-dependent cytochrome P450 produced by one-point mutagenesis and peroxygenation of non-native substrates Catalysis Science And Technology, 6, 2016
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3VNO
| Cytochrome P450SP alpha (CYP152B1) mutant R241E | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, Fatty acid alpha-hydroxylase, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Fujishiro, T, Shoji, O, Sugimoto, H, Shiro, Y, Watanabe, Y. | Deposit date: | 2012-01-17 | Release date: | 2013-02-06 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.17 Å) | Cite: | A substrate-binding-state mimic of H2O2-dependent cytochrome P450 produced by one-point mutagenesis and peroxygenation of non-native substrates Catalysis Science And Technology, 6, 2016
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