PDB Search results for query - 일본 단백질구조 데이터 뱅크

PDB: 115 results

CryoEM structure of Venezuelan equine encephalitis virus VLP in complex with the LDLRAD3 receptor
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Capsid, ...
Authors:	Basore, K, Nelson, C.A, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:	2021-05-27
Release date:	2021-10-13
Last modified:	2021-11-10
Method:	ELECTRON MICROSCOPY (4.3 Å)
Cite:	Structure of Venezuelan equine encephalitis virus in complex with the LDLRAD3 receptor. Nature, 598, 2021

8DAQ

CryoEM structure of Western equine encephalitis virus VLP
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, E1 envelope glycoprotein, E2 envelope glycoprotein
Authors:	Zimmerman, M.I, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)
Deposit date:	2022-06-13
Release date:	2023-12-20
Method:	ELECTRON MICROSCOPY (4.35 Å)
Cite:	Alternate repeat domain usage in an alphavirus entry receptor enables host species expansion To Be Published

8DAN

CryoEM structure of Western equine encephalitis virus VLP in complex with the avian MXRA8 receptor
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, E1 envelope glycoprotein, E2 envelope glycoprotein, ...
Authors:	Zimmerman, M.I, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)
Deposit date:	2022-06-13
Release date:	2023-12-20
Method:	ELECTRON MICROSCOPY (4.74 Å)
Cite:	Alternate domain repeat usage in an alphavirus entry receptor enables host species expansion To Be Published

8DWY

Chikungunya VLP in complex with neutralizing Fab CHK-265 (asymmetric unit)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, CHK-265 heavy chain, CHK-265 light chain, ...
Authors:	Adams, L.J, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:	2022-08-02
Release date:	2023-05-31
Method:	ELECTRON MICROSCOPY (3.18 Å)
Cite:	A chikungunya virus-like particle vaccine induces broadly neutralizing and protective antibodies against alphaviruses in humans. Sci Transl Med, 15, 2023

8DWX

Chikungunya VLP in complex with neutralizing Fab 506.C01 (asymmetric unit)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 506.C01 heavy chain, 506.C01 light chain, ...
Authors:	Adams, L.J, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:	2022-08-02
Release date:	2023-05-31
Method:	ELECTRON MICROSCOPY (3.27 Å)
Cite:	A chikungunya virus-like particle vaccine induces broadly neutralizing and protective antibodies against alphaviruses in humans. Sci Transl Med, 15, 2023

8DWW

Chikungunya VLP in complex with neutralizing Fab 506.A08 (asymmetric unit)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 506.A08 heavy chain, 506.A08 light chain, ...
Authors:	Adams, L.J, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:	2022-08-02
Release date:	2023-05-31
Method:	ELECTRON MICROSCOPY (3.13 Å)
Cite:	A chikungunya virus-like particle vaccine induces broadly neutralizing and protective antibodies against alphaviruses in humans. Sci Transl Med, 15, 2023

5FFL

Crystal structure of mouse CD300lf at 1.6 Angstroms resolution.
Descriptor:	(4S)-2-METHYL-2,4-PENTANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CD300 antigen-like family member F, ...
Authors:	Nelson, C.A, Fremont, D.H.
Deposit date:	2015-12-18
Release date:	2016-08-31
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (1.602 Å)
Cite:	Discovery of a proteinaceous cellular receptor for a norovirus. Science, 353, 2016

2FWO

MHC Class I H-2Kd heavy chain in complex with beta-2microglobulin and peptide derived from influenza nucleoprotein
Descriptor:	Beta-2-microglobulin, H-2 class I histocompatibility antigen, K-D alpha chain, ...
Authors:	Mitaksov, V, Fremont, D.H.
Deposit date:	2006-02-02
Release date:	2006-02-21
Last modified:	2023-08-30
Method:	X-RAY DIFFRACTION (2.6 Å)
Cite:	Structural Definition of the H-2Kd Peptide-binding Motif. J.Biol.Chem., 281, 2006

6V4O

Structure of human 2E01 Fab in complex with influenza virus neuraminidase from B/Phuket/3073/2013
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Antibody Fab heavy chain, Antibody Fab light chain, ...
Authors:	Dai, Y.N, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:	2019-11-28
Release date:	2020-10-07
Last modified:	2020-10-28
Method:	ELECTRON MICROSCOPY (2.8 Å)
Cite:	Human Antibodies Targeting Influenza B Virus Neuraminidase Active Site Are Broadly Protective. Immunity, 53, 2020

6V4N

Structure of human 1G05 Fab in complex with influenza virus neuraminidase from B/Phuket/3073/2013
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Antibody Fab heavy chain, Antibody Fab light chain, ...
Authors:	Dai, Y.N, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:	2019-11-28
Release date:	2020-10-07
Last modified:	2020-10-28
Method:	ELECTRON MICROSCOPY (2.5 Å)
Cite:	Human Antibodies Targeting Influenza B Virus Neuraminidase Active Site Are Broadly Protective. Immunity, 53, 2020

6E47

Crystal Structure of the Murine Norovirus VP1 P domain in complex with the CD300lf Receptor and Glycochenodeoxycholic Acid
Descriptor:	1,2-ETHANEDIOL, CMRF35-like molecule 1, GLYCOCHENODEOXYCHOLIC ACID, ...
Authors:	Nelson, C.A, Fremont, D.H.
Deposit date:	2018-07-16
Release date:	2018-09-12
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (1.95 Å)
Cite:	Structural basis for murine norovirus engagement of bile acids and the CD300lf receptor. Proc. Natl. Acad. Sci. U.S.A., 115, 2018

6E48

Crystal Structure of the Murine Norovirus VP1 P domain in complex with the CD300lf Receptor and Lithocholic Acid
Descriptor:	(3beta,5beta,14beta,17alpha)-3-hydroxycholan-24-oic acid, 1,2-ETHANEDIOL, CALCIUM ION, ...
Authors:	Nelson, C.A, Fremont, D.H.
Deposit date:	2018-07-16
Release date:	2018-09-12
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (1.801 Å)
Cite:	Structural basis for murine norovirus engagement of bile acids and the CD300lf receptor. Proc. Natl. Acad. Sci. U.S.A., 115, 2018

6C6Q

Crystal Structure of the Murine Norovirus VP1 P Domain in complex with the CD300lf Receptor
Descriptor:	1,2-ETHANEDIOL, CHLORIDE ION, CMRF35-like molecule 1, ...
Authors:	Nelson, C.A, Fremont, D.H.
Deposit date:	2018-01-19
Release date:	2018-09-12
Last modified:	2023-10-04
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Structural basis for murine norovirus engagement of bile acids and the CD300lf receptor. Proc. Natl. Acad. Sci. U.S.A., 115, 2018

2HG0

Structure of the West Nile Virus envelope glycoprotein
Descriptor:	2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein
Authors:	Nybakken, G.E, Nelson, C.A, Chen, B.R, Diamond, M.S, Fremont, D.H.
Deposit date:	2006-06-26
Release date:	2006-11-07
Last modified:	2023-08-30
Method:	X-RAY DIFFRACTION (3 Å)
Cite:	Crystal structure of the West Nile virus envelope glycoprotein. J.Virol., 80, 2006

6W37

STRUCTURE OF THE SARS-CoV-2 ORF7A ENCODED ACCESSORY PROTEIN
Descriptor:	ORF7a protein
Authors:	Nelson, C.A, Minasov, G, Shuvalova, L, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:	2020-03-09
Release date:	2020-04-29
Last modified:	2023-10-18
Method:	X-RAY DIFFRACTION (2.9 Å)
Cite:	STRUCTURE OF THE SARS-CoV-2 ORF7A ENCODED ACCESSORY PROTEIN To be published

2GRK

Crystal structure of ectromelia virus EVM1 chemokine binding protein
Descriptor:	EVM001
Authors:	Arnold, P.L, Fremont, D.H.
Deposit date:	2006-04-24
Release date:	2006-05-09
Last modified:	2023-08-30
Method:	X-RAY DIFFRACTION (2.6 Å)
Cite:	Structural determinants of chemokine binding by an ectromelia virus-encoded decoy receptor. J.Virol., 80, 2006

6C74

Crystal Structure of Murine CD300lf in complex with phosphocholine
Descriptor:	CALCIUM ION, CMRF35-like molecule-1, PHOSPHOCHOLINE
Authors:	Nelson, C.A, Fremont, D.H.
Deposit date:	2018-01-19
Release date:	2018-09-12
Last modified:	2023-10-04
Method:	X-RAY DIFFRACTION (1.358 Å)
Cite:	Structural basis for murine norovirus engagement of bile acids and the CD300lf receptor. Proc. Natl. Acad. Sci. U.S.A., 115, 2018

7MKM

SARS-CoV-2 Spike RBD in complex with neutralizing Fab SARS2-38 (local refinement)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, SARS2-38 Fv heavy chain, SARS2-38 Fv light chain, ...
Authors:	Adams, L.J, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:	2021-04-24
Release date:	2021-05-12
Last modified:	2021-12-01
Method:	ELECTRON MICROSCOPY (3.16 Å)
Cite:	A potently neutralizing SARS-CoV-2 antibody inhibits variants of concern by utilizing unique binding residues in a highly conserved epitope. Immunity, 54, 2021

7MKL

SARS-CoV-2 Spike in complex with neutralizing Fab SARS2-38 (three down conformation)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, SARS2-38 Fv heavy chain, ...
Authors:	Adams, L.J, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:	2021-04-24
Release date:	2021-05-12
Last modified:	2021-12-01
Method:	ELECTRON MICROSCOPY (3.2 Å)
Cite:	A potently neutralizing SARS-CoV-2 antibody inhibits variants of concern by utilizing unique binding residues in a highly conserved epitope. Immunity, 54, 2021

4ZLT

Crystal structure of viral chemokine binding protein R17 in complex with CCL3
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, C-C motif chemokine 3, Putative uncharacterized protein
Authors:	Lubman, O.Y, Fremont, D.H.
Deposit date:	2015-05-01
Release date:	2015-11-18
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (3 Å)
Cite:	Parallel Evolution of Chemokine Binding by Structurally Related Herpesvirus Decoy Receptors. Structure, 24, 2016

1XAU

STRUCTURE OF THE BTLA ECTODOMAIN
Descriptor:	B- and T-lymphocyte attenuator, CADMIUM ION
Authors:	Nelson, C.A, Fremont, D.H, Midwest Center for Structural Genomics (MCSG)
Deposit date:	2004-08-26
Release date:	2004-10-05
Last modified:	2011-07-13
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Structural determinants of herpesvirus entry mediator recognition by murine B and T lymphocyte attenuator. J.Immunol., 180, 2008

4GIQ

Crystal Structure of mouse RANK bound to RANKL
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, SODIUM ION, ...
Authors:	Nelson, C.A, Wang, M.W.-H, Fremont, D.H.
Deposit date:	2012-08-08
Release date:	2012-10-24
Last modified:	2023-09-13
Method:	X-RAY DIFFRACTION (2.7 Å)
Cite:	RANKL Employs Distinct Binding Modes to Engage RANK and the Osteoprotegerin Decoy Receptor. Structure, 20, 2012

4ZKQ

Viral chemokine binding protein R17 encoded by rodent gammaherpesvirus Peru ( RHVP)
Descriptor:	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Putative uncharacterized protein
Authors:	Lubman, O.Y, Fremont, D.H.
Deposit date:	2015-04-30
Release date:	2015-11-18
Last modified:	2020-07-29
Method:	X-RAY DIFFRACTION (1.898 Å)
Cite:	Parallel Evolution of Chemokine Binding by Structurally Related Herpesvirus Decoy Receptors. Structure, 24, 2016

5KVG

Zika specific antibody, ZV-67, bound to ZIKA envelope DIII
Descriptor:	CHLORIDE ION, ZIKA Envelope DIII, ZV-67 Antibody Fab Heavy Chain, ...
Authors:	Zhao, H, Nelson, C.A, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:	2016-07-14
Release date:	2016-08-03
Last modified:	2016-08-24
Method:	X-RAY DIFFRACTION (1.4 Å)
Cite:	Structural Basis of Zika Virus-Specific Antibody Protection. Cell, 166, 2016

5KVF

Zika specific antibody, ZV-64, bound to ZIKA envelope DIII
Descriptor:	GLYCEROL, ZV-64 Antibody Fab Heavy Chain, ZV-64 Antibody Fab Light Chain, ...
Authors:	Zhao, H, Nelson, C.A, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:	2016-07-14
Release date:	2016-08-03
Last modified:	2016-08-24
Method:	X-RAY DIFFRACTION (1.4 Å)
Cite:	Structural Basis of Zika Virus-Specific Antibody Protection. Cell, 166, 2016

<123 4 5 >

Total results:	115
Displayed results:	25
Sorted by:	Hit score (from highest)
Deposition authors:	"Fremont, D"