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PDB: 58 results

8SCK
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BU of 8sck by Molmil
Bst DNA polymerase I Large Fragment mutant F710Y/D598A with 3'-amino primer, dGTP, and calcium time-resolved 4h
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ...
Authors:Fang, Z, Lelyveld, V.S, Szostak, J.W.
Deposit date:2023-04-05
Release date:2023-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Trivalent rare earth metal cofactors confer rapid NP-DNA polymerase activity.
Science, 382, 2023
8SCI
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BU of 8sci by Molmil
Bst DNA polymerase I Large Fragment mutant F710Y/D598A with 3'-amino primer, dGTP, and calcium time-resolved 1h
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ...
Authors:Fang, Z, Lelyveld, V.S, Szostak, J.W.
Deposit date:2023-04-05
Release date:2023-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.67 Å)
Cite:Trivalent rare earth metal cofactors confer rapid NP-DNA polymerase activity.
Science, 382, 2023
8SCG
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BU of 8scg by Molmil
Bst DNA polymerase I Large Fragment mutant F710Y/D598A with 3'-amino primer, dGTP, and calcium time-resolved 0h (Ground State)
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 3'-Amino DNA Primer, CALCIUM ION, ...
Authors:Fang, Z, Lelyveld, V.S, Szostak, J.W.
Deposit date:2023-04-05
Release date:2023-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Trivalent rare earth metal cofactors confer rapid NP-DNA polymerase activity.
Science, 382, 2023
8SCM
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BU of 8scm by Molmil
Bst DNA polymerase I Large Fragment mutant F710Y/D598A with 3'-amino primer, dGTP, and calcium time-resolved 8h
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ...
Authors:Fang, Z, Lelyveld, V.S, Szostak, J.W.
Deposit date:2023-04-05
Release date:2023-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Trivalent rare earth metal cofactors confer rapid NP-DNA polymerase activity.
Science, 382, 2023
8SCO
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BU of 8sco by Molmil
Bst DNA polymerase I Large Fragment wildtype D598A with 3'-amino primer, dGTP, and calcium time-resolved 0h (Ground State)
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 3'-Amino DNA primer, CALCIUM ION, ...
Authors:Fang, Z, Lelyveld, V.S, Szostak, J.W.
Deposit date:2023-04-05
Release date:2023-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Trivalent rare earth metal cofactors confer rapid NP-DNA polymerase activity.
Science, 382, 2023
8SCN
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BU of 8scn by Molmil
Bst DNA polymerase I Large Fragment mutant F710Y/D598A with 3'-amino primer, dGTP, and calcium time-resolved 24h (Product State)
Descriptor: CALCIUM ION, DIPHOSPHATE, DNA polymerase I, ...
Authors:Fang, Z, Lelyveld, V.S, Szostak, J.W.
Deposit date:2023-04-05
Release date:2023-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Trivalent rare earth metal cofactors confer rapid NP-DNA polymerase activity.
Science, 382, 2023
8SCU
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BU of 8scu by Molmil
Bst DNA polymerase I Large Fragment wildtype D598A with 3'-amino primer, dGTP, and calcium time-resolved 48h (Product State)
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ...
Authors:Fang, Z, Lelyveld, V.S, Szostak, J.W.
Deposit date:2023-04-05
Release date:2023-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Trivalent rare earth metal cofactors confer rapid NP-DNA polymerase activity.
Science, 382, 2023
5USG
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BU of 5usg by Molmil
5-Se-T2/4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant
Descriptor: DNA (5'-D(*AP*(T5S)P*GP*(T5S)P*CP*G)-3'), MAGNESIUM ION, RNA (5'-R(*UP*CP*GP*AP*CP*A)-3'), ...
Authors:Fang, Z, Qin, L, Huang, Z.
Deposit date:2017-02-13
Release date:2017-03-08
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Synthesis of Pyrimidine Modified Seleno-DNA as a Novel Approach to Antisense Candidate
Chemistryselect, 8, 2023
8SCP
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BU of 8scp by Molmil
Bst DNA polymerase I Large Fragment wildtype D598A with 3'-amino primer, dGTP, and calcium time-resolved 1h
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ...
Authors:Fang, Z, Lelyveld, V.S, Szostak, J.W.
Deposit date:2023-04-05
Release date:2023-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Trivalent rare earth metal cofactors confer rapid NP-DNA polymerase activity.
Science, 382, 2023
8SCQ
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BU of 8scq by Molmil
Bst DNA polymerase I Large Fragment wildtype D598A with 3'-amino primer, dGTP, and calcium time-resolved 2h
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ...
Authors:Fang, Z, Lelyveld, V.S, Szostak, J.W.
Deposit date:2023-04-05
Release date:2023-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Trivalent rare earth metal cofactors confer rapid NP-DNA polymerase activity.
Science, 382, 2023
8SCR
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BU of 8scr by Molmil
Bst DNA polymerase I Large Fragment wildtype D598A with 3'-amino primer, dGTP, and calcium time-resolved 4h
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ...
Authors:Fang, Z, Lelyveld, V.S, Szostak, J.W.
Deposit date:2023-04-05
Release date:2023-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Trivalent rare earth metal cofactors confer rapid NP-DNA polymerase activity.
Science, 382, 2023
8SCS
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BU of 8scs by Molmil
Bst DNA polymerase I Large Fragment wildtype D598A with 3'-amino primer, dGTP, and calcium time-resolved 8h
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ...
Authors:Fang, Z, Lelyveld, V.S, Szostak, J.W.
Deposit date:2023-04-05
Release date:2023-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Trivalent rare earth metal cofactors confer rapid NP-DNA polymerase activity.
Science, 382, 2023
8SCT
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BU of 8sct by Molmil
Bst DNA polymerase I Large Fragment wildtype D598A with 3'-amino primer, dGTP, and calcium time-resolved 24h
Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, CALCIUM ION, DIPHOSPHATE, ...
Authors:Fang, Z, Lelyveld, V.S, Szostak, J.W.
Deposit date:2023-04-05
Release date:2023-10-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Trivalent rare earth metal cofactors confer rapid NP-DNA polymerase activity.
Science, 382, 2023
8TDY
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BU of 8tdy by Molmil
16mer self-complementary duplex RNA with D:U pair sequence 1
Descriptor: MAGNESIUM ION, RNA
Authors:Fang, Z, Jia, X, Szostak, J.W.
Deposit date:2023-07-05
Release date:2024-06-12
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Diaminopurine in Nonenzymatic RNA Template Copying.
J.Am.Chem.Soc., 146, 2024
8TE2
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BU of 8te2 by Molmil
16mer self-complementary duplex RNA with D:C pair sequence 2
Descriptor: CALCIUM ION, RNA
Authors:Fang, Z, Jia, X, Szostak, J.W.
Deposit date:2023-07-05
Release date:2024-06-12
Last modified:2024-06-26
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Diaminopurine in Nonenzymatic RNA Template Copying.
J.Am.Chem.Soc., 146, 2024
7LNG
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BU of 7lng by Molmil
TNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
Descriptor: 2-azanyl-9-[(2~{R},3~{R},4~{S})-3-oxidanyl-4-[oxidanyl-bis(oxidanylidene)-$l^{6}-phosphanyl]oxy-oxolan-2-yl]-1~{H}-purin-6-one, 4-AMINO-1-[(1S,3R,4R,7S)-7-HYDROXY-1-(HYDROXYMETHYL)-2,5-DIOXABICYCLO[2.2.1]HEPT-3-YL]-5-METHYLPYRIMIDIN-2(1H)-ONE, DIGUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Fang, Z, Giurgiu, C, Szostak, J.W.
Deposit date:2021-02-07
Release date:2021-09-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure-Activity Relationships in Nonenzymatic Template-Directed RNA Synthesis.
Angew.Chem.Int.Ed.Engl., 60, 2021
7LNE
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BU of 7lne by Molmil
ANA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
Descriptor: 4-AMINO-1-[(1S,3R,4R,7S)-7-HYDROXY-1-(HYDROXYMETHYL)-2,5-DIOXABICYCLO[2.2.1]HEPT-3-YL]-5-METHYLPYRIMIDIN-2(1H)-ONE, DIGUANOSINE-5'-TRIPHOSPHATE, GUANINE ARABINOSE-5'-PHOSPHATE, ...
Authors:Fang, Z, Giurgiu, C, Szostak, J.W.
Deposit date:2021-02-07
Release date:2021-09-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Structure-Activity Relationships in Nonenzymatic Template-Directed RNA Synthesis.
Angew.Chem.Int.Ed.Engl., 60, 2021
7KUO
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BU of 7kuo by Molmil
FANA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
Descriptor: DIGUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, RNA (5'-R((LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(GFL))-3')
Authors:Fang, Z, Giurgiu, C, Szostak, J.W.
Deposit date:2020-11-25
Release date:2021-09-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.281 Å)
Cite:Structure-Activity Relationships in Nonenzymatic Template-Directed RNA Synthesis.
Angew.Chem.Int.Ed.Engl., 60, 2021
7KUN
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BU of 7kun by Molmil
2'-F modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
Descriptor: DIGUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, RNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*C)-D(P*(GF2))-3')
Authors:Fang, Z, Giurgiu, C, Szostak, J.W.
Deposit date:2020-11-25
Release date:2021-09-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Structure-Activity Relationships in Nonenzymatic Template-Directed RNA Synthesis.
Angew.Chem.Int.Ed.Engl., 60, 2021
7KUK
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BU of 7kuk by Molmil
High resolution RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
Descriptor: DIGUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, RNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3')
Authors:Fang, Z, Giurgiu, C, Szostak, J.W.
Deposit date:2020-11-25
Release date:2021-09-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Structure-Activity Relationships in Nonenzymatic Template-Directed RNA Synthesis.
Angew.Chem.Int.Ed.Engl., 60, 2021
7KUM
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BU of 7kum by Molmil
LNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
Descriptor: 5'-R((LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(LCG)-3', DIGUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION
Authors:Fang, Z, Giurgiu, C, Szostak, J.W.
Deposit date:2020-11-25
Release date:2021-09-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.714 Å)
Cite:Structure-Activity Relationships in Nonenzymatic Template-Directed RNA Synthesis.
Angew.Chem.Int.Ed.Engl., 60, 2021
7KUL
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BU of 7kul by Molmil
DNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
Descriptor: DIGUANOSINE-5'-TRIPHOSPHATE, DNA/RNA (5'-R(*(LKC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*C)-D(P*G)-3'), MAGNESIUM ION
Authors:Fang, Z, Giurgiu, C, Szostak, J.W.
Deposit date:2020-11-25
Release date:2021-09-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Structure-Activity Relationships in Nonenzymatic Template-Directed RNA Synthesis.
Angew.Chem.Int.Ed.Engl., 60, 2021
7KUP
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BU of 7kup by Molmil
2'-OMe modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
Descriptor: 5'-R((LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(OMG))-3', DIGUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION
Authors:Fang, Z, Giurgiu, C, Szostak, J.W.
Deposit date:2020-11-25
Release date:2021-09-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Structure-Activity Relationships in Nonenzymatic Template-Directed RNA Synthesis.
Angew.Chem.Int.Ed.Engl., 60, 2021
7LNF
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BU of 7lnf by Molmil
3'-deoxy modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
Descriptor: 3'-deoxy-guanosine 5'-monophosphate, 4-AMINO-1-[(1S,3R,4R,7S)-7-HYDROXY-1-(HYDROXYMETHYL)-2,5-DIOXABICYCLO[2.2.1]HEPT-3-YL]-5-METHYLPYRIMIDIN-2(1H)-ONE, COBALT (II) ION, ...
Authors:Fang, Z, Giurgiu, C, Szostak, J.W.
Deposit date:2021-02-07
Release date:2021-09-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.652 Å)
Cite:Structure-Activity Relationships in Nonenzymatic Template-Directed RNA Synthesis.
Angew.Chem.Int.Ed.Engl., 60, 2021
6CC9
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BU of 6cc9 by Molmil
NMR data-driven model of GTPase KRas-GMPPNP:Cmpd2 complex tethered to a nanodisc
Descriptor: (2R,4S)-4-[(5-bromo-1H-indole-3-carbonyl)amino]-2-[(4-chlorophenyl)methyl]piperidin-1-ium, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Apolipoprotein A-I, ...
Authors:Fang, Z, Marshall, C.B, Nishikawa, T, Gossert, A.D, Jansen, J.M, Jahnke, W, Ikura, M.
Deposit date:2018-02-06
Release date:2018-09-05
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Inhibition of K-RAS4B by a Unique Mechanism of Action: Stabilizing Membrane-Dependent Occlusion of the Effector-Binding Site.
Cell Chem Biol, 25, 2018

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