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PDB: 229 results

2I9Y
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BU of 2i9y by Molmil
Solution structure of Arabidopsis thaliana protein At1g70830, a member of the major latex protein family
Descriptor: major latex protein-like protein 28 or MLP-like protein 28
Authors:Volkman, B.F, de la Cruz, N.B, Lytle, B.L, Peterson, F.C, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2006-09-06
Release date:2006-09-19
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structures of two Arabidopsis thaliana major latex proteins represent novel helix-grip folds.
Proteins, 76, 2009
2KOM
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BU of 2kom by Molmil
Solution structure of humar Par-3b PDZ2 (residues 451-549)
Descriptor: Partitioning defective 3 homolog
Authors:Volkman, B.F, Tyler, R.C, Peterson, F.C, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2009-09-24
Release date:2009-11-10
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Rapid, robotic, small-scale protein production for NMR screening and structure determination.
Protein Sci., 19, 2010
2KEE
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BU of 2kee by Molmil
Structure of SDF-1/CXCL12
Descriptor: Stromal cell-derived factor 1-alpha
Authors:Volkman, B.F, Veldkamp, C.T, Peterson, F.C.
Deposit date:2009-01-28
Release date:2009-09-29
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Monomeric structure of the cardioprotective chemokine SDF-1/CXCL12
Protein Sci., 18, 2009
2KVB
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BU of 2kvb by Molmil
Solution structure of CI-MPR domain 5 bound to N-acetylglucosaminyl 6-phosphomethylmannoside
Descriptor: Cation-independent mannose-6-phosphate receptor
Authors:Olson, L.J, Peterson, F.C, Volkman, B.F, Dahms, N.M.
Deposit date:2010-03-10
Release date:2010-07-07
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Structural basis for recognition of phosphodiester-containing lysosomal enzymes by the cation-independent mannose 6-phosphate receptor.
Proc.Natl.Acad.Sci.USA, 107, 2010
2KOH
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BU of 2koh by Molmil
NMR structure of mouse Par3-PDZ3 in complex with VE-Cadherin C-terminus
Descriptor: Cadherin-5, Partitioning defective 3 homolog
Authors:Volkman, B.F, Tyler, R.C, Peterson, F.C.
Deposit date:2009-09-22
Release date:2010-02-09
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Distal interactions within the par3-VE-cadherin complex.
Biochemistry, 49, 2010
2KY5
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BU of 2ky5 by Molmil
Solution structure of the PECAM-1 cytoplasmic tail with DPC
Descriptor: Platelet endothelial cell adhesion molecule
Authors:Lytle, B.L, Peterson, F.C, Volkman, B.F, Paddock, C, Newman, D.K, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2010-05-14
Release date:2010-05-26
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Residues within a lipid-associated segment of the PECAM-1 cytoplasmic domain are susceptible to inducible, sequential phosphorylation.
Blood, 117, 2011
2KQN
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BU of 2kqn by Molmil
Solution structure of the AL-09 H87Y immunoglobulin light chain variable domain
Descriptor: Ig kappa chain V-I region AU
Authors:Volkman, B.F, Peterson, F.C, Ramirez-Alvarado, M, Baden, E.M.
Deposit date:2009-11-11
Release date:2010-03-16
Last modified:2022-03-16
Method:SOLUTION NMR
Cite:A single mutation promotes amyloidogenicity through a highly promiscuous dimer interface.
Structure, 18, 2010
6LJA
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BU of 6lja by Molmil
Crystal Structure of exoHep from Bacteroides intestinalis DSM 17393 complexed with disaccharide product
Descriptor: 4-deoxy-2-O-sulfo-alpha-L-threo-hex-4-enopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose, CALCIUM ION, Heparinase II/III-like protein
Authors:Zhang, Q.D, Cao, H.Y, Wei, L, Li, F.C, Zhang, Y.Z.
Deposit date:2019-12-13
Release date:2020-12-23
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.978 Å)
Cite:Discovery of exolytic heparinases and their catalytic mechanism and potential application.
Nat Commun, 12, 2021
6LJL
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BU of 6ljl by Molmil
Crystal Structure of exoHep-Y390A/H555A complexed with a tetrasaccharide substrate
Descriptor: 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose, CALCIUM ION, Heparinase II/III-like protein
Authors:Zhang, Q.D, Cao, H.Y, Wei, L, Li, F.C, Zhang, Y.Z.
Deposit date:2019-12-17
Release date:2020-12-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Discovery of exolytic heparinases and their catalytic mechanism and potential application.
Nat Commun, 12, 2021
2KQR
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BU of 2kqr by Molmil
Solution structure of the N-terminal domain (residues 1-111) of Brugia malayi asparaginyl-tRNA synthetase
Descriptor: Asparaginyl-tRNA synthetase, cytoplasmic
Authors:Volkman, B.F, Peterson, F.C, Kron, M.A, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2009-11-16
Release date:2009-12-15
Last modified:2024-05-08
Method:SOLUTION NMR
Cite:A Hybrid Structural Model of the Complete Brugia malayi Cytoplasmic Asparaginyl-tRNA Synthetase.
J.Mol.Biol., 405, 2011
6WBU
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BU of 6wbu by Molmil
Putative Peptidyl Prolyl cis-trans Isomerase FKBP12 from Mycobacterium tuberculosis
Descriptor: FKBP12 from Mycobacterium tuberculosis
Authors:Andrade, G.C, Silva, L.F.C, Almeida, F.C.L, AnoBom, C.D.
Deposit date:2020-03-27
Release date:2021-03-31
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure and Biochemical Characterization of a Putative Peptidyl Prolyl cis-trans Isomerase FKBP12 from Mycobacterium tuberculosis
To Be Published
9COJ
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BU of 9coj by Molmil
SH3-like tandem domain of human KIN protein
Descriptor: DNA/RNA-binding protein KIN17
Authors:de Lourenco, I.O, Fossey, M.A, Souza, F.P, Seixas, F.A.V, Fernandez, M.A, Almeida, F.C.L, Caruso, I.P.
Deposit date:2024-07-16
Release date:2024-07-31
Method:SOLUTION NMR
Cite:Solution structure of SH3-like tandem domain of human KIN protein and its interaction with RNA homo-oligonucleotides
To Be Published
7N45
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BU of 7n45 by Molmil
Solution NMR structure of the N-terminal globular domain of the endemic HKU1 coronavirus nucleocapsid protein
Descriptor: Nucleoprotein
Authors:Caruso, I.P, Marques, A.L, Santana-Silva, M.C, Almeida, F.C.L, Amorim, G.C.
Deposit date:2021-06-03
Release date:2022-06-08
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution NMR structure of the N-terminal globular domain of the endemic HKU1 coronavirus nucleocapsid protein.
To Be Published
8B8V
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BU of 8b8v by Molmil
Crystal structure of the Rabies virus RNA free nucleoprotein- phosphoprotein complex
Descriptor: DI(HYDROXYETHYL)ETHER, Nucleoprotein, Phosphoprotein
Authors:Gerard, F.C.A, Jamin, M, Bourhis, J.M.
Deposit date:2022-10-05
Release date:2023-03-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure and Dynamics of the Unassembled Nucleoprotein of Rabies Virus in Complex with Its Phosphoprotein Chaperone Module.
Viruses, 14, 2022
4OKJ
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BU of 4okj by Molmil
Crystal structure of RNase AS from M tuberculosis
Descriptor: 3'-5' exoribonuclease Rv2179c/MT2234.1, MAGNESIUM ION
Authors:Romano, M, van de Weerd, R, Brouwer, F.C.C, Roviello, G.N, Lacroix, R, Sparrius, M, van den Brink-van Stempvoort, G, Maaskant, J.J, van der Sar, A.M, Appelmelk, B.J, Geurtsen, J.J, Berisio, R.
Deposit date:2014-01-22
Release date:2014-05-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure and Function of RNase AS, a Polyadenylate-Specific Exoribonuclease Affecting Mycobacterial Virulence In Vivo
Structure, 22, 2014
4OKK
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BU of 4okk by Molmil
Crystal structure of RNase AS from M tuberculosis in complex with UMP
Descriptor: 3'-5' exoribonuclease Rv2179c/MT2234.1, MAGNESIUM ION, URIDINE-5'-MONOPHOSPHATE
Authors:Romano, M, van de Weerd, R, Brouwer, F.C.C, Roviello, G.N, Lacroix, R, Sparrius, M, van den Brink-van Stempvoort, G, Maaskant, J.J, van der Sar, A.M, Appelmelk, B.J, Geurtsen, J.J, Berisio, R.
Deposit date:2014-01-22
Release date:2014-05-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Structure and Function of RNase AS, a Polyadenylate-Specific Exoribonuclease Affecting Mycobacterial Virulence In Vivo
Structure, 22, 2014
7RU7
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BU of 7ru7 by Molmil
Crystal structure of BtrK, a decarboxylase involved in butirosin biosynthesis
Descriptor: DI(HYDROXYETHYL)ETHER, L-glutamyl-[BtrI acyl-carrier protein] decarboxylase, PYRIDOXAL-5'-PHOSPHATE
Authors:Arenas, L.A.R, Paiva, F.C.R, Huang, F, Leadlay, P, Dias, M.V.B.
Deposit date:2021-08-16
Release date:2022-08-17
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of BtrK, a decarboxylase involved in the (S)-4-amino-2-hydroxybutyrate (AHBA) formation during butirosin biosynthesis
J.Mol.Struct., 1267, 2022
6D6X
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BU of 6d6x by Molmil
HSP40 co-chaperone Sis1 J-domain
Descriptor: Type II HSP40 co-chaperone
Authors:Pinheiro, G.M.S, Amorim, G.C, Iqbal, A, Ramos, C.H.I, Almeida, F.C.L.
Deposit date:2018-04-23
Release date:2019-05-01
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution NMR investigation on the structure and function of the isolated J-domain from Sis1: Evidence of transient inter-domain interactions in the full-length protein.
Arch.Biochem.Biophys., 669, 2019
8EOD
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BU of 8eod by Molmil
EEVD:Sis1-81 (J domain) bound conformation
Descriptor: Protein SIS1
Authors:Matos, C.O, Pinheiro, G.M.S, Ramos, C.H.I, Almeida, F.C.L.
Deposit date:2022-10-03
Release date:2023-10-18
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural and dynamical basis for the interaction of HSP70-EEVD with JDP Sis1
To Be Published
6S2P
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BU of 6s2p by Molmil
Structure of the NB-ARC domain from the Tomato immune receptor NRC1
Descriptor: ADENOSINE-5'-DIPHOSPHATE, NRC1
Authors:Steele, J.F.C, Banfield, M.J.
Deposit date:2019-06-21
Release date:2019-07-03
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and biochemical studies of an NB-ARC domain from a plant NLR immune receptor.
Plos One, 14, 2019
1ETU
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BU of 1etu by Molmil
STRUCTURAL DETAILS OF THE BINDING OF GUANOSINE DIPHOSPHATE TO ELONGATION FACTOR TU FROM E. COLI AS STUDIED BY X-RAY CRYSTALLOGRAPHY
Descriptor: ELONGATION FACTOR TU, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
Authors:Clark, B.F.C, Lacour, T.F.M, Kjeldgaard, M, Morikawa, K, Nyborg, J, Rubin, R, Thirup, S.
Deposit date:1988-01-15
Release date:1988-07-16
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural details of the binding of guanosine diphosphate to elongation factor Tu from E. coli as studied by X-ray crystallography.
EMBO J., 4, 1985
1FDM
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BU of 1fdm by Molmil
FD MAJOR COAT PROTEIN IN SDS MICELLES, NMR, 20 STRUCTURES
Descriptor: FD MAJOR COAT PROTEIN
Authors:Almeida, F.C.L, Opella, S.J.
Deposit date:1997-05-28
Release date:1997-09-17
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:fd coat protein structure in membrane environments: structural dynamics of the loop between the hydrophobic trans-membrane helix and the amphipathic in-plane helix.
J.Mol.Biol., 270, 1997
6FGM
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BU of 6fgm by Molmil
The NMR solution structure of the peptide AC12 from Hypsiboas raniceps
Descriptor: ALA-CYS-PHE-LEU-THR-ARG-LEU-GLY-THR-TYR-VAL-CYS
Authors:Popov, C.S.F.C, Simas, B.S, Goodfellow, B.J, Bocca, A.L, Andrade, P.B, Pereira, D, Valentao, P, Pereira, P.J.B, Rodrigues, J.E, Veloso Jr, P.H.H, Rezende, T.M.B.
Deposit date:2018-01-11
Release date:2019-01-09
Last modified:2023-06-14
Method:SOLUTION NMR
Cite:Host-defense peptides AC12, DK16 and RC11 with immunomodulatory activity isolated from Hypsiboas raniceps skin secretion.
Peptides, 113, 2019
8S9E
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BU of 8s9e by Molmil
Solution structure of jarastatin (rJast), a disintegrin from Bothrops jararaca
Descriptor: Disintegrin jarastatin
Authors:Vasconcelos, A.A, Estrada, J.E.C, Zingali, R.B, Almeida, F.C.L.
Deposit date:2023-03-28
Release date:2023-11-29
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Toward the mechanism of jarastatin (rJast) inhibition of the integrin alpha V beta 3.
Int.J.Biol.Macromol., 255, 2024
1JKZ
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BU of 1jkz by Molmil
NMR Solution Structure of Pisum sativum defensin 1 (Psd1)
Descriptor: DEFENSE-RELATED PEPTIDE 1
Authors:Almeida, M.S, Cabral, K.M.S, Kurtenbach, E, Almeida, F.C.L, Valente, A.P.
Deposit date:2001-07-13
Release date:2002-02-06
Last modified:2022-02-23
Method:SOLUTION NMR
Cite:Solution structure of Pisum sativum defensin 1 by high resolution NMR: plant defensins, identical backbone with different mechanisms of action.
J.Mol.Biol., 315, 2002

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