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PDB: 215 件
3M97
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Structure of the soluble domain of cytochrome c552 with its flexible linker segment from Paracoccus denitrificans
分子名称: Cytochrome c-552, HEME C, ZINC ION
著者Rajendran, C, Ermler, U, Ludwig, B, Michel, H.
登録日2010-03-20
公開日2010-07-21
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.332 Å)
主引用文献Structure at 1.5 A resolution of cytochrome c(552) with its flexible linker segment, a membrane-anchored protein from Paracoccus denitrificans.
Acta Crystallogr.,Sect.D, 66, 2010
3MK7
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BU of 3mk7 by Molmil
The structure of CBB3 cytochrome oxidase
分子名称: 30-mer peptide, CALCIUM ION, COPPER (II) ION, ...
著者Buschmann, S, Warkentin, E, Michel, H, Ermler, U.
登録日2010-04-14
公開日2010-08-04
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献The Structure of cbb3 Cytochrome Oxidase Provides Insights into Proton Pumping
Science, 329, 2010
3MM5
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BU of 3mm5 by Molmil
Dissimilatory sulfite reductase in complex with the substrate sulfite
分子名称: IRON/SULFUR CLUSTER, SIROHEME, SULFITE ION, ...
著者Parey, K, Warkentin, E, Kroneck, P.M.H, Ermler, U.
登録日2010-04-19
公開日2010-07-21
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Reaction cycle of the dissimilatory sulfite reductase from Archaeoglobus fulgidus.
Biochemistry, 49, 2010
3MM6
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BU of 3mm6 by Molmil
Dissimilatory sulfite reductase cyanide complex
分子名称: CYANIDE ION, IRON/SULFUR CLUSTER, SIROHEME, ...
著者Parey, K, Warkentin, E, Kroneck, P.M.H, Ermler, U.
登録日2010-04-19
公開日2010-07-21
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Reaction cycle of the dissimilatory sulfite reductase from Archaeoglobus fulgidus.
Biochemistry, 49, 2010
3MMA
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BU of 3mma by Molmil
Dissimilatory sulfite reductase phosphate complex
分子名称: IRON/SULFUR CLUSTER, PHOSPHATE ION, SIROHEME, ...
著者Parey, K, Warkentin, E, Kroneck, P.M.H, Ermler, U.
登録日2010-04-19
公開日2010-07-21
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Reaction cycle of the dissimilatory sulfite reductase from Archaeoglobus fulgidus.
Biochemistry, 49, 2010
4G9P
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BU of 4g9p by Molmil
Structure of the GcpE-MEcPP (IspG) complex from Thermus thermophilus
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, ...
著者Rekittke, I, Jomaa, H, Ermler, U.
登録日2012-07-24
公開日2012-09-26
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Structure of the GcpE (IspG)-MEcPP complex from Thermus thermophilus.
Febs Lett., 586, 2012
3MMB
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BU of 3mmb by Molmil
Dissimilatory sulfite reductase in complex with the endproduct sulfide
分子名称: HYDROSULFURIC ACID, IRON/SULFUR CLUSTER, SIROHEME, ...
著者Parey, K, Warkentin, E, Kroneck, P.M.H, Ermler, U.
登録日2010-04-19
公開日2010-07-21
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Reaction cycle of the dissimilatory sulfite reductase from Archaeoglobus fulgidus.
Biochemistry, 49, 2010
4GI2
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BU of 4gi2 by Molmil
Crotonyl-CoA Carboxylase/Reductase
分子名称: Crotonyl-CoA carboxylase/reductase, MAGNESIUM ION, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Weidenweber, S, Erb, T.J, Ermler, U.
登録日2012-08-08
公開日2013-08-14
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crotonyl-CoA Carboxylase/Reductase
To be Published
6GGU
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BU of 6ggu by Molmil
Crystal structure of native FE-hydrogenase from Methanothermobacter marburgensis
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 5,10-methenyltetrahydromethanopterin hydrogenase, GLYCEROL, ...
著者Wagner, T, Huang, G, Ermler, U, Shima, S.
登録日2018-05-03
公開日2019-05-22
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Self-protection of the catalytic iron center of a methanogenic [Fe]-hydrogenase via a dynamic dimer-to-hexamer transformation
To Be Published
6HAE
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Crystal structure of [Fe]-hydrogenase (Hmd) from Methanococcus aeolicus in complex with FeGP cofactor and methenyl-tetrahydromethanopterin (close form B)
分子名称: 1-{4-[(6S,6aR,7R)-3-amino-6,7-dimethyl-1-oxo-1,2,5,6,6a,7-hexahydro-8H-imidazo[1,5-f]pteridin-10-ium-8-yl]phenyl}-1-deoxy-5-O-{5-O-[(S)-{[(1S)-1,3-dicarboxypropyl]oxy}(hydroxy)phosphoryl]-alpha-D-ribofuranosyl}-D-ribitol, 5,10-methenyltetrahydromethanopterin hydrogenase, CHLORIDE ION, ...
著者Huang, G, Wagner, T, Wodrich, M.D, Ataka, K, Bill, E, Ermler, U, Hu, X, Shima, S.
登録日2018-08-07
公開日2019-08-28
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献The atomic-resolution crystal structure of activated [Fe]-hydrogenase
Nat Catal, 2019
6HAV
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BU of 6hav by Molmil
Crystal structure of [Fe]-hydrogenase (Hmd) from Methanococcus aeolicus in complex with FeGP and methenyl-tetrahydromethanopterin (close form A) at 1.06 A resolution
分子名称: 1-{4-[(6S,6aR,7R)-3-amino-6,7-dimethyl-1-oxo-1,2,5,6,6a,7-hexahydro-8H-imidazo[1,5-f]pteridin-10-ium-8-yl]phenyl}-1-deoxy-5-O-{5-O-[(S)-{[(1S)-1,3-dicarboxypropyl]oxy}(hydroxy)phosphoryl]-alpha-D-ribofuranosyl}-D-ribitol, 5,10-methenyltetrahydromethanopterin hydrogenase, GLYCEROL, ...
著者Huang, G, Wagner, T, Wodrich, M.D, Ataka, K, Bill, E, Ermler, U, Hu, X, Shima, S.
登録日2018-08-08
公開日2019-08-28
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.06 Å)
主引用文献The atomic-resolution crystal structure of activated [Fe]-hydrogenase
Nat Catal, 2019
6HUZ
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BU of 6huz by Molmil
HmdII from Desulfurobacterium thermolithotrophum reconstituted with Fe-guanylylpyridinol (FeGP) cofactor and co-crystallized with methenyl-tetrahydrofolate form B
分子名称: 1,2-ETHANEDIOL, 5,10-Methenyltetrahydrofolate, Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase-related protein, ...
著者Watanabe, T, Wagner, T, Huang, G, Kahnt, J, Ataka, K, Ermler, U, Shima, S.
登録日2018-10-09
公開日2019-01-09
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献The Bacterial [Fe]-Hydrogenase Paralog HmdII Uses Tetrahydrofolate Derivatives as Substrates.
Angew. Chem. Int. Ed. Engl., 58, 2019
6HUY
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BU of 6huy by Molmil
HmdII from Desulfurobacterium thermolithotrophum reconstitued with Fe-guanylylpyridinol (FeGP) cofactor and co-crystallized with methenyl-tetrahydrofolate form A
分子名称: 5,10-Methenyltetrahydrofolate, Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase-related protein, DIMETHYL SULFOXIDE, ...
著者Watanabe, T, Wagner, T, Huang, G, Kahnt, J, Ataka, K, Ermler, U, Shima, S.
登録日2018-10-09
公開日2019-01-09
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献The Bacterial [Fe]-Hydrogenase Paralog HmdII Uses Tetrahydrofolate Derivatives as Substrates.
Angew. Chem. Int. Ed. Engl., 58, 2019
6HAC
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BU of 6hac by Molmil
Crystal structure of [Fe]-hydrogenase (Hmd) holoenzyme from Methanococcus aeolicus (open form)
分子名称: 5,10-methenyltetrahydromethanopterin hydrogenase, GLYCEROL, PENTAETHYLENE GLYCOL, ...
著者Huang, G, Wagner, T, Wodrich, M.D, Ataka, K, Bill, E, Ermler, U, Hu, X, Shima, S.
登録日2018-08-07
公開日2019-08-28
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The atomic-resolution crystal structure of activated [Fe]-hydrogenase
Nat Catal, 2019
6HUX
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BU of 6hux by Molmil
HmdII from Methanocaldococcus jannaschii reconstitued with Fe-guanylylpyridinol (FeGP) cofactor and co-crystallized with methenyl-tetrahydromethanopterin at 2.5 A resolution
分子名称: 1,2-ETHANEDIOL, 1-{4-[(6S,6aR,7R)-3-amino-6,7-dimethyl-1-oxo-1,2,5,6,6a,7-hexahydro-8H-imidazo[1,5-f]pteridin-10-ium-8-yl]phenyl}-1-deoxy-5-O-{5-O-[(S)-{[(1S)-1,3-dicarboxypropyl]oxy}(hydroxy)phosphoryl]-alpha-D-ribofuranosyl}-D-ribitol, ACETATE ION, ...
著者Watanabe, T, Wagner, T, Huang, G, Kahnt, J, Ataka, K, Ermler, U, Shima, S.
登録日2018-10-09
公開日2019-01-09
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The Bacterial [Fe]-Hydrogenase Paralog HmdII Uses Tetrahydrofolate Derivatives as Substrates.
Angew. Chem. Int. Ed. Engl., 58, 2019
1QV9
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BU of 1qv9 by Molmil
Coenzyme F420-dependent methylenetetrahydromethanopterin dehydrogenase (Mtd) from Methanopyrus kandleri: A methanogenic enzyme with an unusual quarternary structure
分子名称: F420-dependent methylenetetrahydromethanopterin dehydrogenase, MAGNESIUM ION
著者Hagemeier, C.H, Shima, S, Thauer, R.K, Bourenkov, G, Bartunik, H.D, Ermler, U.
登録日2003-08-27
公開日2003-11-11
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Coenzyme F420-dependent methylenetetrahydromethanopterin dehydrogenase (Mtd) from Methanopyrus kandleri: a methanogenic enzyme with an unusual quarternary structure
J.Mol.Biol., 332, 2003
1RGV
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BU of 1rgv by Molmil
Crystal Structure of the Ferredoxin from Thauera aromatica
分子名称: IRON/SULFUR CLUSTER, ferredoxin
著者Unciuleac, M, Boll, M, Warkentin, E, Ermler, U.
登録日2003-11-13
公開日2004-02-10
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Crystallization of 4-hydroxybenzoyl-CoA reductase and the structure of its electron donor ferredoxin.
Acta Crystallogr.,Sect.D, 60, 2004
1RM6
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BU of 1rm6 by Molmil
Structure of 4-hydroxybenzoyl-CoA reductase from Thauera aromatica
分子名称: (MOLYBDOPTERIN-CYTOSINE DINUCLEOTIDE-S,S)-DIOXO-AQUA-MOLYBDENUM(V), 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 4-hydroxybenzoyl-CoA reductase alpha subunit, ...
著者Unciuleac, M, Warkentin, E, Page, C.C, Dutton, P.L, Boll, M, Ermler, U.
登録日2003-11-27
公開日2004-12-21
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure of a Xanthine Oxidase-Related 4-Hydroxybenzoyl-CoA Reductase with an Additional [4Fe-4S] Cluster and an Inverted Electron Flow
Structure, 12, 2004
1RHC
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BU of 1rhc by Molmil
F420-dependent secondary alcohol dehydrogenase in complex with an F420-acetone adduct
分子名称: ACETONE, CHLORIDE ION, COENZYME F420, ...
著者Aufhammer, S.W, Warkentin, E, Berk, H, Shima, S, Thauer, R.K, Ermler, U.
登録日2003-11-14
公開日2004-03-30
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Coenzyme binding in f(420)-dependent secondary alcohol dehydrogenase, a member of the bacterial luciferase family.
Structure, 12, 2004
3WSG
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BU of 3wsg by Molmil
Reduced HcgD from Methanocaldococcus jannaschii with citrate
分子名称: CITRIC ACID, FE (II) ION, Putative GTP cyclohydrolase 1 type 2
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2014-03-13
公開日2014-08-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.996 Å)
主引用文献A possible iron delivery function of the dinuclear iron center of HcgD in [Fe]-hydrogenase cofactor biosynthesis
Febs Lett., 588, 2014
3WV7
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BU of 3wv7 by Molmil
HcgE from Methanothermobacter marburgensis
分子名称: ADENOSINE-5'-DIPHOSPHATE, Hmd co-occurring protein HcgE
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2014-05-16
公開日2015-04-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Protein-pyridinol thioester precursor for biosynthesis of the organometallic acyl-iron ligand in [Fe]-hydrogenase cofactor
Nat Commun, 6, 2015
3WB0
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BU of 3wb0 by Molmil
HcgB from Methanocaldococcus jannaschii in complex with light-decomposed FeGP cofactor of [Fe]-hydrogenase
分子名称: 5'-O-[(S)-{[2-(carboxymethyl)-6-hydroxy-3,5-dimethylpyridin-4-yl]oxy}(hydroxy)phosphoryl]guanosine, Uncharacterized protein MJ0488
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2013-05-10
公開日2014-02-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Identification of the HcgB enzyme in [Fe]-hydrogenase-cofactor biosynthesis.
Angew.Chem.Int.Ed.Engl., 52, 2013
3WB1
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BU of 3wb1 by Molmil
HcgB from Methanocaldococcus jannaschii
分子名称: SULFATE ION, Uncharacterized protein MJ0488
著者Tamura, H, Fujishiro, T, Ermler, U, Shima, S.
登録日2013-05-11
公開日2014-02-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Identification of the HcgB enzyme in [Fe]-hydrogenase-cofactor biosynthesis.
Angew.Chem.Int.Ed.Engl., 52, 2013
3WV8
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BU of 3wv8 by Molmil
ATP-bound HcgE from Methanothermobacter marburgensis
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Hmd co-occurring protein HcgE, SULFATE ION
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2014-05-16
公開日2015-04-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Protein-pyridinol thioester precursor for biosynthesis of the organometallic acyl-iron ligand in [Fe]-hydrogenase cofactor
Nat Commun, 6, 2015
3WSD
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BU of 3wsd by Molmil
Oxidized HcgD from Methanocaldococcus jannaschii
分子名称: CHLORIDE ION, FE (III) ION, Putative GTP cyclohydrolase 1 type 2
著者Fujishiro, T, Ermler, U, Shima, S.
登録日2014-03-13
公開日2014-08-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献A possible iron delivery function of the dinuclear iron center of HcgD in [Fe]-hydrogenase cofactor biosynthesis
Febs Lett., 588, 2014

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