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PDB: 393 results

3N2S
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BU of 3n2s by Molmil
Structure of NfrA1 nitroreductase from B. subtilis
Descriptor: CHLORIDE ION, FLAVIN MONONUCLEOTIDE, NADPH-dependent nitro/flavin reductase
Authors:Morera, S, Gueguen-Chaignon, V, Meyer, P, Cortial, S, Ouazzani, J.
Deposit date:2010-05-19
Release date:2010-09-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:NADH oxidase activity of Bacillus subtilis nitroreductase NfrA1: insight into its biological role.
Febs Lett., 584, 2010
5CFE
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BU of 5cfe by Molmil
Bacillus subtilis AP endonuclease ExoA
Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, Exodeoxyribonuclease
Authors:Morera, S, Vigouroux, A.
Deposit date:2015-07-08
Release date:2016-07-06
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structural comparison of AP endonucleases from the exonuclease III family reveals new amino acid residues in human AP endonuclease 1 that are involved in incision of damaged DNA.
Biochimie, 128-129, 2016
6QAK
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BU of 6qak by Molmil
Structure of human ALDH9 in P21212 space group
Descriptor: 1,2-ETHANEDIOL, 4-trimethylaminobutyraldehyde dehydrogenase
Authors:Morera, S, Vigouroux, A, Kopecny, D.
Deposit date:2018-12-19
Release date:2019-04-10
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Kinetic and structural analysis of human ALDH9A1.
Biosci.Rep., 39, 2019
6QAO
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BU of 6qao by Molmil
Structure of human aldehyde dehydrogenase 9A1 in P21 space group
Descriptor: 4-trimethylaminobutyraldehyde dehydrogenase, DI(HYDROXYETHYL)ETHER
Authors:Morera, S, Vigouroux, A.
Deposit date:2018-12-19
Release date:2019-04-10
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:Kinetic and structural analysis of human ALDH9A1.
Biosci.Rep., 39, 2019
6DW1
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BU of 6dw1 by Molmil
Cryo-EM structure of the benzodiazepine-sensitive alpha1beta1gamma2S tri-heteromeric GABAA receptor in complex with GABA (ECD map)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GAMMA-AMINO-BUTANOIC ACID, Gamma-aminobutyric acid receptor subunit alpha-1,Gamma-aminobutyric acid receptor subunit alpha-1, ...
Authors:Phulera, S, Zhu, H, Yu, J, Yoshioka, C, Gouaux, E.
Deposit date:2018-06-26
Release date:2018-08-08
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Cryo-EM structure of the benzodiazepine-sensitive alpha 1 beta 1 gamma 2S tri-heteromeric GABAAreceptor in complex with GABA.
Elife, 7, 2018
6EPY
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BU of 6epy by Molmil
Structure of the PBP MelB (Atu4661) in complex with raffinose from A.fabrum C58
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Periplasmic alpha-galactoside-binding protein, ...
Authors:Morera, S, Vigouroux, A.
Deposit date:2017-10-12
Release date:2018-04-11
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:The plant defense signal galactinol is specifically used as a nutrient by the bacterial pathogenAgrobacterium fabrum.
J. Biol. Chem., 293, 2018
6DW0
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BU of 6dw0 by Molmil
Cryo-EM structure of the benzodiazepine-sensitive alpha1beta1gamma2S tri-heteromeric GABAA receptor in complex with GABA (Whole map)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GAMMA-AMINO-BUTANOIC ACID, Gamma-aminobutyric acid receptor subunit alpha-1,Gamma-aminobutyric acid receptor subunit alpha-1, ...
Authors:Phulera, S, Zhu, H, Yu, J, Yoshioka, C, Gouaux, E.
Deposit date:2018-06-26
Release date:2018-08-08
Last modified:2023-11-15
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Cryo-EM structure of the benzodiazepine-sensitive alpha 1 beta 1 gamma 2S tri-heteromeric GABAAreceptor in complex with GABA.
Elife, 7, 2018
6RU4
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BU of 6ru4 by Molmil
Structure of the SBP FpvC from pseudomonas aeruginosa in complex with Mn2+
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, MANGANESE (II) ION, ...
Authors:Morera, S, Vigouroux, A.
Deposit date:2019-05-27
Release date:2019-07-31
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:A unique ferrous iron binding mode is associated with large conformational changes for the transport protein FpvC of Pseudomonas aeruginosa.
Febs J., 287, 2020
6R6K
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BU of 6r6k by Molmil
Structure of a FpvC mutant from pseudomonas aeruginosa
Descriptor: 1,2-ETHANEDIOL, ABC transporter substrate-binding protein, DI(HYDROXYETHYL)ETHER, ...
Authors:Morera, S, Vigouroux, A.
Deposit date:2019-03-27
Release date:2019-07-31
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A unique ferrous iron binding mode is associated with large conformational changes for the transport protein FpvC of Pseudomonas aeruginosa.
Febs J., 287, 2020
5Y3C
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BU of 5y3c by Molmil
Crystal structure of zebrafish Ccd1 DIX domain
Descriptor: Dixin-A
Authors:Terawaki, S, Shibata, N, Higuchi, Y.
Deposit date:2017-07-28
Release date:2017-09-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Structural basis for Ccd1 auto-inhibition in the Wnt pathway through homomerization of the DIX domain.
Sci Rep, 7, 2017
5Y3B
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BU of 5y3b by Molmil
Crystal structure of mouse Ccd1 DIX domain
Descriptor: Dixin
Authors:Terawaki, S, Shibata, N, Higuchi, Y.
Deposit date:2017-07-28
Release date:2017-09-06
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis for Ccd1 auto-inhibition in the Wnt pathway through homomerization of the DIX domain.
Sci Rep, 7, 2017
6R3Z
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BU of 6r3z by Molmil
Structure of the SBP FpvC in complex with Ni2+ ion from P. aeruginosa in P212121 space group
Descriptor: 1,2-ETHANEDIOL, NICKEL (II) ION, Probable adhesion protein
Authors:Morera, S, Marty, L.
Deposit date:2019-03-21
Release date:2019-07-31
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:A unique ferrous iron binding mode is associated with large conformational changes for the transport protein FpvC of Pseudomonas aeruginosa.
Febs J., 287, 2020
6R44
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BU of 6r44 by Molmil
Structure of the SBP FpvC in complex with Ni2+ ion from P.aeruginosa from P21 space group
Descriptor: NICKEL (II) ION, Probable adhesion protein
Authors:Morera, S, Marty, L.
Deposit date:2019-03-21
Release date:2019-07-31
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:A unique ferrous iron binding mode is associated with large conformational changes for the transport protein FpvC of Pseudomonas aeruginosa.
Febs J., 287, 2020
6R5S
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BU of 6r5s by Molmil
Structure of the SBP FpvC from pseudomonas aeruginosa in complex with Fe(II)
Descriptor: 1,2-ETHANEDIOL, Adhesion protein, FE (II) ION
Authors:Morera, S, Vigouroux, A.
Deposit date:2019-03-25
Release date:2019-07-31
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:A unique ferrous iron binding mode is associated with large conformational changes for the transport protein FpvC of Pseudomonas aeruginosa.
Febs J., 287, 2020
4K8M
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BU of 4k8m by Molmil
High resolution structure of M.tb NRDH
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Phulera, S, Mande, S.C.
Deposit date:2013-04-18
Release date:2014-06-18
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (0.87 Å)
Cite:The crystal structure of Mycobacterium tuberculosis NrdH at 0.87 angstrom suggests a possible mode of its activity.
Biochemistry, 52, 2013
4K1G
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BU of 4k1g by Molmil
Structure of E. coli Nfo(Endo IV)-H69A mutant bound to a cleaved DNA duplex containing a alphadA:T basepair
Descriptor: DI(HYDROXYETHYL)ETHER, DNA (5'-D(*CP*GP*TP*CP*GP*TP*CP*GP*TP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*TP*CP*C)-3'), ...
Authors:Morera, S, Vigouroux, A.
Deposit date:2013-04-05
Release date:2013-07-31
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Insight into mechanisms of 3'-5' exonuclease activity and removal of bulky 8,5'-cyclopurine adducts by apurinic/apyrimidinic endonucleases.
Proc.Natl.Acad.Sci.USA, 110, 2013
4POW
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BU of 4pow by Molmil
Structure of the PBP NocT in complex with pyronopaline
Descriptor: 1,2-ETHANEDIOL, 1-[(1S)-4-carbamimidamido-1-carboxybutyl]-5-oxo-D-proline, Nopaline-binding periplasmic protein
Authors:Morera, S, Vigouroux, A.
Deposit date:2014-02-26
Release date:2014-10-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Agrobacterium uses a unique ligand-binding mode for trapping opines and acquiring a competitive advantage in the niche construction on plant host.
Plos Pathog., 10, 2014
4PZ2
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BU of 4pz2 by Molmil
Structure of Zm ALDH2-6 (RF2F) in complex with NAD
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Morera, S, Vigouroux, A, Kopecny, D.
Deposit date:2014-03-28
Release date:2015-03-18
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Role and structural characterization of plant aldehyde dehydrogenases from family 2 and family 7.
Biochem.J., 468, 2015
4PXL
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BU of 4pxl by Molmil
Structure of Zm ALDH2-3 (RF2C) in complex with NAD
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Cytosolic aldehyde dehydrogenase RF2C, ...
Authors:Morera, S, Vigouroux, A, Kopecny, D.
Deposit date:2014-03-24
Release date:2015-03-18
Last modified:2015-05-20
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Role and structural characterization of plant aldehyde dehydrogenases from family 2 and family 7.
Biochem.J., 468, 2015
4PP0
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BU of 4pp0 by Molmil
Structure of the PBP NocT-M117N in complex with pyronopaline
Descriptor: 1,2-ETHANEDIOL, 1-[(1S)-4-carbamimidamido-1-carboxybutyl]-5-oxo-D-proline, DI(HYDROXYETHYL)ETHER, ...
Authors:Morera, S, Vigouroux, A.
Deposit date:2014-02-26
Release date:2014-10-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Agrobacterium uses a unique ligand-binding mode for trapping opines and acquiring a competitive advantage in the niche construction on plant host.
Plos Pathog., 10, 2014
4KPN
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BU of 4kpn by Molmil
Plant nucleoside hydrolase - PpNRh1 enzyme
Descriptor: CALCIUM ION, Nucleoside N-ribohydrolase 1
Authors:Morera, S, Vigouroux, A, Kopecny, D.
Deposit date:2013-05-14
Release date:2013-11-27
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.35 Å)
Cite:Structure and Function of Nucleoside Hydrolases from Physcomitrella patens and Maize Catalyzing the Hydrolysis of Purine, Pyrimidine, and Cytokinin Ribosides.
Plant Physiol., 163, 2013
4YTD
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BU of 4ytd by Molmil
Crystal structure of the C-terminal Coiled Coil of mouse Bicaudal D1
Descriptor: PHOSPHATE ION, Protein bicaudal D homolog 1
Authors:Terawaki, S, Yoshikane, A, Higuchi, Y, Wakamatsu, K.
Deposit date:2015-03-17
Release date:2015-04-08
Last modified:2020-02-05
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural basis for cargo binding and autoinhibition of Bicaudal-D1 by a parallel coiled-coil with homotypic registry
Biochem.Biophys.Res.Commun., 460, 2015
4I8P
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BU of 4i8p by Molmil
Crystal structure of aminoaldehyde dehydrogenase 1a from Zea mays (ZmAMADH1a)
Descriptor: 1,2-ETHANEDIOL, Aminoaldehyde dehydrogenase 1, DI(HYDROXYETHYL)ETHER, ...
Authors:Morera, S, Vigouroux, A, Kopecny, D.
Deposit date:2012-12-04
Release date:2013-02-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Plant ALDH10 family: identifying critical residues for substrate specificity and trapping a thiohemiacetal intermediate.
J.Biol.Chem., 288, 2013
3FJO
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BU of 3fjo by Molmil
Structure of chimeric YH CPR
Descriptor: FLAVIN MONONUCLEOTIDE, FLAVIN-ADENINE DINUCLEOTIDE, NADPH-cytochrome P450 reductase
Authors:Morera, S, Aigrain, L, Truan, G.
Deposit date:2008-12-15
Release date:2009-06-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of the open conformation of a functional chimeric NADPH cytochrome P450 reductase
Embo Rep., 10, 2009
2YVC
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BU of 2yvc by Molmil
Crystal structure of the Radixin FERM domain complexed with the NEP cytoplasmic tail
Descriptor: Neprilysin, Radixin
Authors:Terawaki, S, Kitano, K, Hakoshima, T.
Deposit date:2007-04-11
Release date:2007-04-24
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis for type II membrane protein binding by ERM proteins revealed by the radixin-neutral endopeptidase 24.11 (NEP) complex
J.Biol.Chem., 282, 2007

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