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PDB: 75 件

6FOO
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Structure of Ryanodine Receptor 1 in nanodiscs in the presence of calcium and ATP
分子名称: Ryanodine receptor 1, ZINC ION
著者Willegems, K, Efremov, R.G.
登録日2018-02-08
公開日2018-08-08
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (8.2 Å)
主引用文献Influence of Lipid Mimetics on Gating of Ryanodine Receptor.
Structure, 26, 2018
1H2S
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Molecular basis of transmenbrane signalling by sensory rhodopsin II-transducer complex
分子名称: RETINAL, SENSORY RHODOPSIN II, SENSORY RHODOPSIN II TRANSDUCER, ...
著者Gordeliy, V.I, Labahn, J, Moukhametzianov, R, Efremov, R, Granzin, J, Schlesinger, R, Bueldt, G, Savopol, T, Scheidig, A, Klare, J.P, Engelhard, M.
登録日2002-08-15
公開日2002-10-10
最終更新日2023-12-13
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Molecular Basis of Transmembrane Signalling by Sensory Rhodopsin II-Transducer Complex
Nature, 419, 2002
8BX5
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Alvinella pompejana nicotinic acetylcholine receptor Alpo4 in apo state (dataset 1)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Acetylcholine receptor
著者De Gieter, S, Efremov, R.G, Ulens, C.
登録日2022-12-07
公開日2023-07-12
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Sterol derivative binding to the orthosteric site causes conformational changes in an invertebrate Cys-loop receptor.
Elife, 12, 2023
8BXD
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Alvinella pompejana nicotinic acetylcholine receptor Alpo4 in apo state (Alpo4_LMNG_Serotonin dataset 4)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Acetylcholine receptor
著者De Gieter, S, Efremov, R.G, Ulens, C.
登録日2022-12-08
公開日2023-07-12
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (6.2 Å)
主引用文献Sterol derivative binding to the orthosteric site causes conformational changes in an invertebrate Cys-loop receptor.
Elife, 12, 2023
8BXF
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Alvinella pompejana nicotinic acetylcholine receptor Alpo4 in apo state (Alpo4_apo, dataset 1)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Acetylcholine receptor
著者De Gieter, S, Efremov, R.G, Ulens, C.
登録日2022-12-08
公開日2023-07-12
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Sterol derivative binding to the orthosteric site causes conformational changes in an invertebrate Cys-loop receptor.
Elife, 12, 2023
8BXB
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Alvinella pompejana nicotinic acetylcholine receptor Alpo in apo state (dataset 2)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Acetylcholine receptor
著者De Gieter, S, Efremov, R.G, Ulens, C.
登録日2022-12-08
公開日2023-07-12
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Sterol derivative binding to the orthosteric site causes conformational changes in an invertebrate Cys-loop receptor.
Elife, 12, 2023
8BXE
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Alvinella pompejana nicotinic acetylcholine receptor Alpo4 in apo state (Alpo4_comb dataset 3)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Acetylcholine receptor
著者De Gieter, S, Efremov, R.G, Ulens, C.
登録日2022-12-08
公開日2023-07-12
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Sterol derivative binding to the orthosteric site causes conformational changes in an invertebrate Cys-loop receptor.
Elife, 12, 2023
4O9Y
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Crystal Structure of TcdA1
分子名称: TcdA1
著者Meusch, D, Gatsogiannis, C, Efremov, R.G, Lang, A.E, Hofnagel, O, Vetter, I.R, Aktories, K, Raunser, S.
登録日2014-01-03
公開日2014-02-26
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3.502 Å)
主引用文献Mechanism of Tc toxin action revealed in molecular detail.
Nature, 508, 2014
4O9X
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Crystal Structure of TcdB2-TccC3
分子名称: MERCURY (II) ION, TcdB2, TccC3
著者Meusch, D, Gatsogiannis, C, Efremov, R.G, Lang, A.E, Hofnagel, O, Vetter, I.R, Aktories, K, Raunser, S.
登録日2014-01-03
公開日2014-02-26
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.17 Å)
主引用文献Mechanism of Tc toxin action revealed in molecular detail.
Nature, 508, 2014
7QD6
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Cryo-EM structure of Tn4430 TnpA transposase from Tn3 family in complex with strand-transfer like DNA product
分子名称: IR71st non transferred strand, IR71st transferred strand, Transposase for transposon Tn4430
著者Shkumatov, A.V, Oger, C.A, Aryanpour, N, Hallet, B.F, Efremov, R.G.
登録日2021-11-26
公開日2022-10-26
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Structural insight into Tn3 family transposition mechanism.
Nat Commun, 13, 2022
7QD5
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Cryo-EM structure of Tn4430 TnpA transposase from Tn3 family in complex with 48 bp long transposon end DNA
分子名称: IR48 DNA substrate, non transferred strand, IR48 transferred strand, ...
著者Shkumatov, A.V, Oger, C.A, Aryanpour, N, Hallet, B.F, Efremov, R.G.
登録日2021-11-26
公開日2022-10-26
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Structural insight into Tn3 family transposition mechanism.
Nat Commun, 13, 2022
7QD8
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Cryo-EM structure of Tn4430 TnpA transposase from Tn3 family in apo state
分子名称: Transposase for transposon Tn4430
著者Shkumatov, A.V, Oger, C.A, Aryanpour, N, Hallet, B.F, Efremov, R.G.
登録日2021-11-26
公開日2022-10-26
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Structural insight into Tn3 family transposition mechanism.
Nat Commun, 13, 2022
7QD4
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Cryo-EM structure of Tn4430 TnpA transposase from Tn3 family in complex with 100 bp long transposon end DNA
分子名称: IR100 DNA substrate, none transferred strand, transferred strand, ...
著者Shkumatov, A.V, Oger, C.A, Aryanpour, N, Hallet, B.F, Efremov, R.G.
登録日2021-11-26
公開日2022-10-26
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Structural insight into Tn3 family transposition mechanism.
Nat Commun, 13, 2022
1IH9
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BU of 1ih9 by Molmil
NMR Structure of Zervamicin IIB (peptaibol antibiotic) Bound to DPC Micelles
分子名称: ZERVAMICIN IIB
著者Shenkarev, Z.O, Balasheva, T.A, Efremov, R.G, Yakimenko, Z.A, Ovchinnikova, T.V, Raap, J, Arseniev, A.S.
登録日2001-04-19
公開日2002-02-13
最終更新日2012-12-12
実験手法SOLUTION NMR
主引用文献Spatial Structure of Zervamicin Iib Bound to Dpc Micelles: Implications for Voltage-Gating.
Biophys.J., 82, 2002
2G9P
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BU of 2g9p by Molmil
NMR structure of a novel antimicrobial peptide, latarcin 2a, from spider (Lachesana tarabaevi) venom
分子名称: antimicrobial peptide Latarcin 2a
著者Dubovskii, P.V, Volynsky, P.E, Polyansky, A.A, Chupin, V.V, Efremov, R.G, Arseniev, A.S.
登録日2006-03-07
公開日2006-09-12
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Spatial structure and activity mechanism of a novel spider antimicrobial peptide.
Biochemistry, 45, 2006
8RS0
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BU of 8rs0 by Molmil
Structure of RyR1 in detergent in primed state in complex with nanobody and FKBP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CAFFEINE, CALCIUM ION, ...
著者Li, C, Efremov, R.G.
登録日2024-01-24
公開日2024-10-09
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Rapid small-scale nanobody-assisted purification of ryanodine receptors for cryo-EM.
J.Biol.Chem., 300, 2024
8RRS
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BU of 8rrs by Molmil
Structure of mouse RyR2 solubilised in detergent in open state in complex with Ca2+, ATP, caffeine and Nb9657.
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CAFFEINE, CALCIUM ION, ...
著者Li, C, Efremov, R.G.
登録日2024-01-23
公開日2024-10-09
最終更新日2024-11-06
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Rapid small-scale nanobody-assisted purification of ryanodine receptors for cryo-EM.
J.Biol.Chem., 300, 2024
8RRT
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BU of 8rrt by Molmil
Structure of rabbit RyR1 reconstituted into lipid liposomes in open state in complex with FKBP and Nb9657
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CAFFEINE, CALCIUM ION, ...
著者Li, C, Efremov, R.G.
登録日2024-01-23
公開日2024-10-09
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (4.6 Å)
主引用文献Rapid small-scale nanobody-assisted purification of ryanodine receptors for cryo-EM.
J.Biol.Chem., 300, 2024
8RRU
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Structure of RyR1 reconstituted into lipid liposomes in primed state in complex with FKBP and Nb9657.
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CAFFEINE, CALCIUM ION, ...
著者Li, C, Efremov, R.G.
登録日2024-01-23
公開日2024-10-09
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (4.7 Å)
主引用文献Rapid small-scale nanobody-assisted purification of ryanodine receptors for cryo-EM.
J.Biol.Chem., 300, 2024
8RRW
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BU of 8rrw by Molmil
Structure of RyR1 in detergent in open state in complex with FKBP and Nb9657.
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CAFFEINE, CALCIUM ION, ...
著者Li, C, Efremov, R.G.
登録日2024-01-23
公開日2024-10-09
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献Rapid small-scale nanobody-assisted purification of ryanodine receptors for cryo-EM.
J.Biol.Chem., 300, 2024
8RRX
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Structure of RyR1 reconstituted into lipid nanodisc in primed state in complex with Ca2+, ATP, caffeine and Nb9657
分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, ADENOSINE-5'-TRIPHOSPHATE, CAFFEINE, ...
著者Li, C, Efremov, R.G.
登録日2024-01-23
公開日2024-10-09
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Rapid small-scale nanobody-assisted purification of ryanodine receptors for cryo-EM.
J.Biol.Chem., 300, 2024
8RRV
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Structure of RyR1 in detergent in close state in complex with FKBP and Nb9657.
分子名称: Peptidyl-prolyl cis-trans isomerase FKBP1B, Ryanodine receptor 1, ZINC ION, ...
著者Li, C, Efremov, R.G.
登録日2024-01-23
公開日2024-10-09
最終更新日2024-10-16
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Rapid small-scale nanobody-assisted purification of ryanodine receptors for cryo-EM.
J.Biol.Chem., 300, 2024
8BM0
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Structure of GroEL:GroES-ATP complex plunge frozen 200 ms after reaction initiation
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Chaperonin GroEL, Co-chaperonin GroES, ...
著者Dhurandhar, M, Torino, S, Efremov, R.
登録日2022-11-10
公開日2023-08-09
最終更新日2024-01-31
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Time-resolved cryo-EM using a combination of droplet microfluidics with on-demand jetting.
Nat.Methods, 20, 2023
7Z09
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Crystal structure of the ground state of bacteriorhodopsin at 1.05 Angstrom resolution
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Bacteriorhodopsin, EICOSANE, ...
著者Borshchevskiy, V, Kovalev, K, Round, E, Efremov, R, Bourenkov, G, Gordeliy, V.
登録日2022-02-22
公開日2022-05-04
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献True-atomic-resolution insights into the structure and functional role of linear chains and low-barrier hydrogen bonds in proteins.
Nat.Struct.Mol.Biol., 29, 2022
7Z0A
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Crystal structure of the ground state of bacteriorhodopsin at 1.22 Angstrom resolution
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Bacteriorhodopsin, EICOSANE, ...
著者Borshchevskiy, V, Kovalev, K, Round, E, Efremov, R, Bourenkov, G, Gordeliy, V.
登録日2022-02-22
公開日2022-05-04
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.22 Å)
主引用文献True-atomic-resolution insights into the structure and functional role of linear chains and low-barrier hydrogen bonds in proteins.
Nat.Struct.Mol.Biol., 29, 2022

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