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PDB: 88 件
1Y28
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BU of 1y28 by Molmil
Crystal structure of the R220A metBJFIXL HEME domain
分子名称: PROTOPORPHYRIN IX CONTAINING FE, Sensor protein fixL
著者Dunham, C.M, Dioum, E.M, Tuckerman, J.R, Gonzalez, G, Scott, W.G, Gilles-Gonzalez, M.A.
登録日2004-11-21
公開日2004-12-07
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献A distal arginine in the oxygen-sensing heme-PAS domains is essential to ligand binding, signal transduction, and structure
Biochemistry, 42, 2003
2UXD
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BU of 2uxd by Molmil
Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.
分子名称: 16S RIBOSOMAL RNA, A-SITE MESSENGER RNA FRAGMENT CGGG, ANTICODON STEM-LOOP OF TRANSFER RNA WITH ANTICODON CCCG, ...
著者Dunham, C.M, Selmer, M, Phelps, S.S, Kelley, A.C, Suzuki, T, Joseph, S, Ramakrishnan, V.
登録日2007-03-28
公開日2007-10-02
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structures of Trnas with an Expanded Anticodon Loop in the Decoding Center of the 30S Ribosomal Subunit.
RNA, 13, 2007
2UXB
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BU of 2uxb by Molmil
Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA GGGU in the context of the Thermus thermophilus 30S subunit.
分子名称: 16S RIBOSOMAL RNA, A-SITE MESSENGER RNA FRAGMENT GGGU, ANTICODON STEM-LOOP OF TRANSFER RNA WITH ANTICODON ACCC, ...
著者Dunham, C.M, Selmer, M, Phelps, S.S, Kelley, A.C, Suzuki, T, Joseph, S, Ramakrishnan, V.
登録日2007-03-28
公開日2007-07-31
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structures of tRNAs with an expanded anticodon loop in the decoding center of the 30S ribosomal subunit.
RNA, 13, 2007
2UXC
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BU of 2uxc by Molmil
Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA UCGU in the context of the Thermus thermophilus 30S subunit.
分子名称: 16S RIBOSOMAL RNA, A-SITE MESSENGER RNA FRAGMENT CGGG, ANTICODON STEM-LOOP OF TRANSFER RNA WITH ANTICODON ACGA, ...
著者Dunham, C.M, Selmer, M, Phelps, S.S, Kelley, A.C, Suzuki, T, Joseph, S, Ramakrishnan, V.
登録日2007-03-28
公開日2007-05-08
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structures of Trnas with an Expanded Anticodon Loop in the Decoding Center of the 30S Ribosomal Subunit.
RNA, 13, 2007
1Q29
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BU of 1q29 by Molmil
Hammerhead Ribozyme with 5'-5' G-G linkage: Conformational change experiment
分子名称: 5'-R(*GP*GP*UP*GP*GP*UP*CP*UP*GP*AP*UP*GP*AP*GP*GP*CP*C)-3', COBALT (II) ION, Ribozyme
著者Dunham, C.M, Murray, J.B, Scott, W.G.
登録日2003-07-23
公開日2004-02-24
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献A helical twist-induced conformational switch activates cleavage in the hammerhead ribozyme.
J.Mol.Biol., 332, 2003
1NYI
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BU of 1nyi by Molmil
Crosslinked Hammerhead Ribozyme Initial State
分子名称: 5'-R(*GP*CP*CP*GP*AP*AP*AP*CP*UP*CP*GP*UP*AP*AP*GP*AP*GP*UP*CP*AP*CP*CP*AP*C)-3', 5'-R(P*GP*UP*GP*GP*UP*CP*UP*GP*AP*UP*GP*AP*GP*GP*CP*C)-3', COBALT (II) ION, ...
著者Dunham, C.M, Murray, J.B, Scott, W.G.
登録日2003-02-12
公開日2004-02-24
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献A helical twist-induced conformational switch activates cleavage in the hammerhead ribozyme.
J.Mol.Biol., 332, 2003
6M9A
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BU of 6m9a by Molmil
Bordetella pertussis globin coupled sensor regulatory domain (BpeGReg)
分子名称: CALCIUM ION, HYDROGEN PEROXIDE, PROTOPORPHYRIN IX CONTAINING FE, ...
著者Rivera, S.R, Hoffer, E.D, Dunham, C.M, Weinert, E.E.
登録日2018-08-23
公開日2018-11-14
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural Insights into Oxygen-Dependent Signal Transduction within Globin Coupled Sensors.
Inorg Chem, 57, 2018
8GHU
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BU of 8ghu by Molmil
Methyltransferase RmtC bound to the 30S ribosomal subunit
分子名称: 16S rRNA, 16S rRNA (guanine(1405)-N(7))-methyltransferase, 30S ribosomal protein S12, ...
著者Srinivas, P, Conn, G.L, Dunham, C.M.
登録日2023-03-12
公開日2023-04-12
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献30S subunit recognition and G1405 modification by the aminoglycoside-resistance 16S ribosomal RNA methyltransferase RmtC.
Biorxiv, 2023
5IWH
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BU of 5iwh by Molmil
Structure of P. vulgaris HigB toxin delta H92
分子名称: CHLORIDE ION, Endoribonuclease HigB
著者Schureck, M.A, Repack, A.A, Miles, S.J, Marquez, J, Dunham, C.M.
登録日2016-03-22
公開日2016-07-20
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.101 Å)
主引用文献Mechanism of endonuclease cleavage by the HigB toxin.
Nucleic Acids Res., 44, 2016
5IXL
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BU of 5ixl by Molmil
Structure of P. vulgaris HigB toxin Y91A variant
分子名称: CHLORIDE ION, Endoribonuclease HigB
著者Schureck, M.A, Repack, A.A, Miles, S.J, Marquez, J, Dunham, C.M.
登録日2016-03-23
公開日2016-07-20
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Mechanism of endonuclease cleavage by the HigB toxin.
Nucleic Acids Res., 44, 2016
5J30
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BU of 5j30 by Molmil
Thermus thermophilus 70S termination complex containing E. coli RF1
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Hoffer, E.D, Dunham, C.M.
登録日2016-03-30
公開日2016-10-12
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Uniformity of Peptide Release Is Maintained by Methylation of Release Factors.
Cell Rep, 17, 2016
5J3C
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BU of 5j3c by Molmil
Thermus thermophilus 70S termination complex containing E. coli RF1
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Hoffer, E.D, Dunham, C.M.
登録日2016-03-30
公開日2016-10-12
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (3.04 Å)
主引用文献Uniformity of Peptide Release Is Maintained by Methylation of Release Factors.
Cell Rep, 17, 2016
3UZ0
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BU of 3uz0 by Molmil
Crystal Structure of SpoIIIAH and SpoIIQ Complex
分子名称: SULFATE ION, Stage II sporulation protein Q, Stage III sporulation protein AH
著者Maehigashi, T, Meisner, J, Dunham, C.M.
登録日2011-12-07
公開日2012-03-21
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.82 Å)
主引用文献Structure of the basal components of a bacterial transporter.
Proc.Natl.Acad.Sci.USA, 109, 2012
4V4T
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BU of 4v4t by Molmil
Crystal structure of the whole ribosomal complex with a stop codon in the A-site.
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Petry, S, Brodersen, D.E, Murphy IV, F.V, Dunham, C.M, Selmer, M, Tarry, M.J, Kelley, A.C, Ramakrishnan, V.
登録日2005-10-12
公開日2014-07-09
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (6.46 Å)
主引用文献Crystal Structures of the Ribosome in Complex with Release Factors RF1 and RF2 Bound to a Cognate Stop Codon.
Cell(Cambridge,Mass.), 123, 2005
9AX8
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BU of 9ax8 by Molmil
70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Mattingly, J.M, Nguyen, H.A, Dunham, C.M.
登録日2024-03-06
公開日2024-09-18
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (2.6 Å)
主引用文献Structural analysis of noncanonical translation initiation complexes.
J.Biol.Chem., 300, 2024
9CG6
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BU of 9cg6 by Molmil
70S initiation complex (tRNA-fMet M1 + GUG start codon)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Mattingly, J.M, Nguyen, H.A, Dunham, C.M.
登録日2024-06-28
公開日2024-09-18
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (2.61 Å)
主引用文献Structural analysis of noncanonical translation initiation complexes.
J.Biol.Chem., 300, 2024
9CG5
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BU of 9cg5 by Molmil
70S initiation complex (tRNA-fMet M1 + UUG start codon)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Mattingly, J.M, Nguyen, H.A, Dunham, C.M.
登録日2024-06-28
公開日2024-09-18
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (2.59 Å)
主引用文献Structural analysis of noncanonical translation initiation complexes.
J.Biol.Chem., 300, 2024
9CG7
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BU of 9cg7 by Molmil
70S initiation complex (tRNA-fMet M1 + AUG start codon)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Mattingly, J.M, Nguyen, H.A, Dunham, C.M.
登録日2024-06-28
公開日2024-09-18
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (2.75 Å)
主引用文献Structural analysis of noncanonical translation initiation complexes.
J.Biol.Chem., 300, 2024
9AX7
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BU of 9ax7 by Molmil
70S initiation complex (tRNA-fMet M1 + CUG start codon)
分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
著者Mattingly, J.M, Nguyen, H.A, Dunham, C.M.
登録日2024-03-06
公開日2024-09-18
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (2.63 Å)
主引用文献Structural analysis of noncanonical translation initiation complexes.
J.Biol.Chem., 300, 2024
4TUA
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BU of 4tua by Molmil
Crystal structure of ASL-Thr bound to Codon ACC-A on the Ribosome
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Fagan, C.E, Dunham, C.M.
登録日2014-06-24
公開日2015-05-13
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Structural insights into translational recoding by frameshift suppressor tRNASufJ.
Rna, 20, 2014
4TUC
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BU of 4tuc by Molmil
Crystal structure of ASL-SufJ bound to Codon ACC-A on the Ribosome
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Fagan, C.E, Dunham, C.M.
登録日2014-06-24
公開日2015-05-13
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Structural insights into translational recoding by frameshift suppressor tRNASufJ.
Rna, 20, 2014
4TUE
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BU of 4tue by Molmil
Crystal structure of ASL-SufJ bound to Codon ACC-U on the Ribosome
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Fagan, C.E, Dunham, C.M.
登録日2014-06-24
公開日2015-05-13
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Structural insights into translational recoding by frameshift suppressor tRNASufJ.
Rna, 20, 2014
4TUD
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BU of 4tud by Molmil
Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Fagan, C.E, Dunham, C.M.
登録日2014-06-24
公開日2015-05-13
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Structural insights into translational recoding by frameshift suppressor tRNASufJ.
Rna, 20, 2014
4TUB
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BU of 4tub by Molmil
Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome
分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
著者Fagan, C.E, Dunham, C.M.
登録日2014-06-24
公開日2015-05-13
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Structural insights into translational recoding by frameshift suppressor tRNASufJ.
Rna, 20, 2014
4V7J
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BU of 4v7j by Molmil
Structure of RelE nuclease bound to the 70S ribosome (precleavage state)
分子名称: 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ...
著者Neubauer, C, Gao, Y.-G, Andersen, K.R, Dunham, C.M, Kelley, A.C, Hentschel, J, Gerdes, K, Ramakrishnan, V, Brodersen, D.E.
登録日2009-11-02
公開日2014-07-09
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献The structural basis for mRNA recognition and cleavage by the ribosome-dependent endonuclease RelE.
Cell(Cambridge,Mass.), 139, 2009

 

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