3LZZ
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![BU of 3lzz by Molmil](/molmil-images/mine/3lzz) | Crystal structures of Cupin superfamily BbDUF985 from Branchiostoma belcheri tsingtauense in apo and GDP-bound forms | Descriptor: | ACETATE ION, GUANOSINE-5'-DIPHOSPHATE, Putative uncharacterized protein | Authors: | Du, Y, He, Y.-X, Saren, G, Zhang, X, Zhang, S.-C, Chen, Y, Zhou, C.-Z. | Deposit date: | 2010-03-02 | Release date: | 2010-06-02 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Crystal structures of the apo and GDP-bound forms of a cupin-like protein BbDUF985 from Branchiostoma belcheri tsingtauense Proteins, 2010
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6LQS
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![BU of 6lqs by Molmil](/molmil-images/mine/6lqs) | |
6LQR
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![BU of 6lqr by Molmil](/molmil-images/mine/6lqr) | |
6LQV
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![BU of 6lqv by Molmil](/molmil-images/mine/6lqv) | |
6LQT
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![BU of 6lqt by Molmil](/molmil-images/mine/6lqt) | |
6LQQ
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![BU of 6lqq by Molmil](/molmil-images/mine/6lqq) | |
6LQP
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8JTK
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![BU of 8jtk by Molmil](/molmil-images/mine/8jtk) | Structure of AYWB phytoplasma SAP05 recognizing AtRpn10 | Descriptor: | 26S proteasome non-ATPase regulatory subunit 4 homolog, Sequence-variable mosaic (SVM) signal sequence domain-containing protein | Authors: | Du, Y.X, Zhang, L.Y, Zheng, Q.Y. | Deposit date: | 2023-06-22 | Release date: | 2023-07-19 | Last modified: | 2024-07-17 | Method: | X-RAY DIFFRACTION (1.57 Å) | Cite: | Structure basis for recognition of plant Rpn10 by phytoplasma SAP05 in ubiquitin-independent protein degradation. Iscience, 27, 2024
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3NZ3
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![BU of 3nz3 by Molmil](/molmil-images/mine/3nz3) | Crystal structure of the mucin-binding domain of Spr1345 from Streptococcus pneumoniae | Descriptor: | Putative uncharacterized protein, SULFATE ION, TRIETHYLENE GLYCOL | Authors: | Du, Y, He, Y.-X, Zhang, Z.-Y, Yang, Y.-H, Shi, W.-W, Frolet, C, Guilmi, A.M, Vernet, T, Zhou, C.-Z, Chen, Y. | Deposit date: | 2010-07-15 | Release date: | 2011-04-20 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structure of the mucin-binding domain of Spr1345 from Streptococcus pneumoniae J.Struct.Biol., 174, 2011
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8IYA
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![BU of 8iya by Molmil](/molmil-images/mine/8iya) | Complex of SETDB1-derived peptide bound to UBE2E1 | Descriptor: | Histone-lysine N-methyltransferase SETDB1, SULFATE ION, Ubiquitin-conjugating enzyme E2 E1 | Authors: | Du, Y.X, Liu, L. | Deposit date: | 2023-04-04 | Release date: | 2024-01-03 | Last modified: | 2024-07-17 | Method: | X-RAY DIFFRACTION (2.43 Å) | Cite: | Structure-guided engineering enables E3 ligase-free and versatile protein ubiquitination via UBE2E1. Nat Commun, 15, 2024
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3PPP
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![BU of 3ppp by Molmil](/molmil-images/mine/3ppp) | Structures of the substrate-binding protein provide insights into the multiple compatible solutes binding specificities of Bacillus subtilis ABC transporter OpuC | Descriptor: | Glycine betaine/carnitine/choline-binding protein, TRIMETHYL GLYCINE | Authors: | Du, Y, Shi, W.W, He, Y.X, Yang, Y.H, Zhou, C.Z, Chen, Y. | Deposit date: | 2010-11-25 | Release date: | 2011-05-11 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Structures of the substrate-binding protein provide insights into the multiple compatible solute binding specificities of the Bacillus subtilis ABC transporter OpuC Biochem.J., 436, 2011
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3PPO
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![BU of 3ppo by Molmil](/molmil-images/mine/3ppo) | Structures of the substrate-binding protein provide insights into the multiple compatible solutes binding specificities of Bacillus subtilis ABC transporter OpuC | Descriptor: | (2S)-3-carboxy-2-hydroxy-N,N,N-trimethylpropan-1-aminium, Glycine betaine/carnitine/choline-binding protein | Authors: | Du, Y, Shi, W.W, He, Y.X, Yang, Y.H, Zhou, C.Z, Chen, Y. | Deposit date: | 2010-11-24 | Release date: | 2011-05-11 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Structures of the substrate-binding protein provide insights into the multiple compatible solute binding specificities of the Bacillus subtilis ABC transporter OpuC Biochem.J., 436, 2011
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8JTL
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![BU of 8jtl by Molmil](/molmil-images/mine/8jtl) | Structure of OY phytoplasma SAP05 binding with AtRpn10 | Descriptor: | 26S proteasome non-ATPase regulatory subunit 4 homolog, Sequence-variable mosaic (SVM) signal sequence domain-containing protein | Authors: | Du, Y.X, Zhang, L.Y, Zheng, Q.Y. | Deposit date: | 2023-06-22 | Release date: | 2023-07-12 | Last modified: | 2024-07-17 | Method: | X-RAY DIFFRACTION (1.78 Å) | Cite: | Structure basis for recognition of plant Rpn10 by phytoplasma SAP05 in ubiquitin-independent protein degradation. Iscience, 27, 2024
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3PPN
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![BU of 3ppn by Molmil](/molmil-images/mine/3ppn) | Structures of the substrate-binding protein provide insights into the multiple compatible solutes binding specificities of Bacillus subtilis ABC transporter OpuC | Descriptor: | Glycine betaine/carnitine/choline-binding protein | Authors: | Du, Y, Shi, W.W, He, Y.X, Yang, Y.H, Zhou, C.Z, Chen, Y. | Deposit date: | 2010-11-24 | Release date: | 2011-05-11 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Structures of the substrate-binding protein provide insights into the multiple compatible solute binding specificities of the Bacillus subtilis ABC transporter OpuC Biochem.J., 436, 2011
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3PPQ
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![BU of 3ppq by Molmil](/molmil-images/mine/3ppq) | Structures of the substrate-binding protein provide insights into the multiple compatible solutes binding specificities of Bacillus subtilis ABC transporter OpuC | Descriptor: | CHOLINE ION, Glycine betaine/carnitine/choline-binding protein | Authors: | Du, Y, Shi, W.W, He, Y.X, Yang, Y.H, Zhou, C.Z, Chen, Y. | Deposit date: | 2010-11-25 | Release date: | 2011-05-11 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.91 Å) | Cite: | Structures of the substrate-binding protein provide insights into the multiple compatible solute binding specificities of the Bacillus subtilis ABC transporter OpuC Biochem.J., 436, 2011
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3PPR
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![BU of 3ppr by Molmil](/molmil-images/mine/3ppr) | Structures of the substrate-binding protein provide insights into the multiple compatible solutes binding specificities of Bacillus subtilis ABC transporter OpuC | Descriptor: | (4S)-2-METHYL-1,4,5,6-TETRAHYDROPYRIMIDINE-4-CARBOXYLIC ACID, Glycine betaine/carnitine/choline-binding protein | Authors: | Du, Y, Shi, W.W, He, Y.X, Yang, Y.H, Zhou, C.Z, Chen, Y. | Deposit date: | 2010-11-25 | Release date: | 2011-05-11 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Structures of the substrate-binding protein provide insights into the multiple compatible solute binding specificities of the Bacillus subtilis ABC transporter OpuC Biochem.J., 436, 2011
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6LQU
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![BU of 6lqu by Molmil](/molmil-images/mine/6lqu) | |
6P29
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![BU of 6p29 by Molmil](/molmil-images/mine/6p29) | N-demethylindolmycin synthase (PluN2) in complex with N-demethylindolmycin | Descriptor: | (5S)-2-amino-5-[(1R)-1-(1H-indol-3-yl)ethyl]-1,3-oxazol-4(5H)-one, N-demethylindolmycin synthase (PluN2), TRIETHYLENE GLYCOL | Authors: | Du, Y.L, Higgins, M.A, Zhao, G, Ryan, K.S. | Deposit date: | 2019-05-21 | Release date: | 2019-08-07 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Convergent biosynthetic transformations to a bacterial specialized metabolite. Nat.Chem.Biol., 15, 2019
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7D63
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![BU of 7d63 by Molmil](/molmil-images/mine/7d63) | Cryo-EM structure of 90S preribosome with inactive Utp24 (state C) | Descriptor: | 13 kDa ribonucleoprotein-associated protein, 18S rRNA, 40S ribosomal protein S1-A, ... | Authors: | Du, Y, Zhang, J, An, W, Ye, K. | Deposit date: | 2020-09-29 | Release date: | 2021-10-06 | Last modified: | 2024-05-29 | Method: | ELECTRON MICROSCOPY (12.3 Å) | Cite: | Cryo-EM structure of 90S preribosome with inactive Utp24 (state C) To Be Published
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7D4I
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![BU of 7d4i by Molmil](/molmil-images/mine/7d4i) | Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F) | Descriptor: | 13 kDa ribonucleoprotein-associated protein, 18S rRNA, 40S ribosomal protein S1-A, ... | Authors: | Du, Y, Zhang, J, An, W, Ye, K. | Deposit date: | 2020-09-24 | Release date: | 2021-10-06 | Last modified: | 2024-05-29 | Method: | ELECTRON MICROSCOPY (4 Å) | Cite: | Cryo-EM structure of 90S small ribosomal precursors complex with Dhr1 To Be Published
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7D5S
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![BU of 7d5s by Molmil](/molmil-images/mine/7d5s) | Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2) | Descriptor: | 13 kDa ribonucleoprotein-associated protein, 18S rRNA, 40S ribosomal protein S12, ... | Authors: | Du, Y, Zhang, J, An, W, Ye, K. | Deposit date: | 2020-09-28 | Release date: | 2021-10-06 | Last modified: | 2024-05-29 | Method: | ELECTRON MICROSCOPY (4.6 Å) | Cite: | Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2) To Be Published
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7D5T
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![BU of 7d5t by Molmil](/molmil-images/mine/7d5t) | Cryo-EM structure of 90S preribosome with inactive Utp24 (state F1) | Descriptor: | 13 kDa ribonucleoprotein-associated protein, 18S rRNA, 40S ribosomal protein S1-A, ... | Authors: | Du, Y, Zhang, J, An, W, Ye, K. | Deposit date: | 2020-09-28 | Release date: | 2021-10-06 | Last modified: | 2024-05-29 | Method: | ELECTRON MICROSCOPY (6 Å) | Cite: | Cryo-EM structure of 90S preribosome with inactive Utp24 (state F1) To Be Published
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5YZ4
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![BU of 5yz4 by Molmil](/molmil-images/mine/5yz4) | Structure of the PIN domain endonuclease Utp24 | Descriptor: | CALCIUM ION, ZINC ION, rRNA-processing protein fcf1 | Authors: | Du, Y, An, W, Ye, K. | Deposit date: | 2017-12-12 | Release date: | 2018-12-19 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.135 Å) | Cite: | Structural and functional analysis of Utp24, an endonuclease for processing 18S ribosomal RNA. Plos One, 13, 2018
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6KE6
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4GFU
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![BU of 4gfu by Molmil](/molmil-images/mine/4gfu) | PTPN18 in complex with HER2-pY1248 phosphor-peptides | Descriptor: | HER2-pY1248 phosphor-peptide, Tyrosine-protein phosphatase non-receptor type 18 | Authors: | Wang, H.M, Yang, F, Du, Y.J, Yang, D.X, Zhang, Y, Yu, X, Sun, J.P. | Deposit date: | 2012-08-04 | Release date: | 2013-08-07 | Last modified: | 2023-12-06 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | PTPN18-HER2 peptides To be Published
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