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PDB: 219 results

7O9E
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BU of 7o9e by Molmil
diNi-sulerythrin
Descriptor: CHLORIDE ION, NICKEL (II) ION, Sulerythrin
Authors:Jeoung, J.-H, Dobbek, H.
Deposit date:2021-04-15
Release date:2021-12-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Bimetallic Mn, Fe, Co, and Ni Sites in a Four-Helix Bundle Protein: Metal Binding, Structure, and Peroxide Activation.
Inorg.Chem., 60, 2021
7O8A
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BU of 7o8a by Molmil
diFe-sulerythrin reduced with Na-dithionite
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, FE (III) ION, ...
Authors:Jeoung, J.-H, Dobbek, H.
Deposit date:2021-04-15
Release date:2021-12-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.21 Å)
Cite:Bimetallic Mn, Fe, Co, and Ni Sites in a Four-Helix Bundle Protein: Metal Binding, Structure, and Peroxide Activation.
Inorg.Chem., 60, 2021
3ZYY
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BU of 3zyy by Molmil
Reductive activator for corrinoid,iron-sulfur protein
Descriptor: (R,R)-2,3-BUTANEDIOL, FE2/S2 (INORGANIC) CLUSTER, IRON-SULFUR CLUSTER BINDING PROTEIN, ...
Authors:Hennig, S.E, Jeoung, J.-H, Goetzl, S, Dobbek, H.
Deposit date:2011-08-30
Release date:2012-04-04
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Redox-Dependent Complex Formation by an ATP-Dependent Activator of the Corrinoid/Iron-Sulfur Protein.
Proc.Natl.Acad.Sci.USA, 109, 2012
3V15
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BU of 3v15 by Molmil
Crystal structure of the Fe(II)/alpha-ketoglutarate dependent taurine dioxygenase from Pseudomonas putida KT2440
Descriptor: Alpha-ketoglutarate-dependent taurine dioxygenase
Authors:Knauer, S.H, Dobbek, H.
Deposit date:2011-12-09
Release date:2012-01-18
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The Fe(II) / alpha-ketoglutarate dependent taurine dioxygenases from Pseudomonas putida and Escherichia coli are tetramers
Febs J., 279, 2012
7O0D
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BU of 7o0d by Molmil
monomeric acetyl-CoA synthase in open conformation with methanethiol moiety of CoA bound to nickel proximal
Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CO-methylating acetyl-CoA synthase, ...
Authors:Kreibich, J, Jeoung, J.H, Dobbek, H.
Deposit date:2021-03-26
Release date:2022-04-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Ligand binding at the Ni,Ni-[4Fe-4S] cluster of acetyl-CoA synthase
To Be Published
7O89
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BU of 7o89 by Molmil
sulerythrin without metals (apo-state)
Descriptor: CHLORIDE ION, Sulerythrin
Authors:Jeoung, J.-H, Dobbek, H.
Deposit date:2021-04-15
Release date:2021-12-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.16 Å)
Cite:Bimetallic Mn, Fe, Co, and Ni Sites in a Four-Helix Bundle Protein: Metal Binding, Structure, and Peroxide Activation.
Inorg.Chem., 60, 2021
3KNQ
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BU of 3knq by Molmil
Beta Turn Optimization of the Gene-3-Protein of Filamentous Phage Fd
Descriptor: Attachment protein G3P
Authors:Jakob, R.P, Dobbek, H.
Deposit date:2009-11-12
Release date:2009-11-24
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Elimination of a cis-proline-containing loop and turn optimization stabilizes a protein and accelerates its folding.
J.Mol.Biol., 399, 2010
7NYS
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BU of 7nys by Molmil
monomeric acetyl-CoA synthase in closed conformation with carbon monoxide bound to the Ni proximal of cluster A
Descriptor: $l^{3}-oxidanylidynemethylnickel, 2-[3,8,8,12,12-pentakis(2-hydroxy-2-oxoethyl)-2,7,11-tris(oxidanylidene)-1,4,6,9,10,13-hexaoxa-5$l^{6}-titanaspiro[4.4^{5}.4^{5}]tridecan-3-yl]ethanoic acid, CHLORIDE ION, ...
Authors:Kreibich, J, Jeoung, J.H, Dobbek, H.
Deposit date:2021-03-23
Release date:2022-04-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2 Å)
Cite:Ligand binding at the Ni,Ni-[4Fe-4S] cluster of acetyl-CoA synthase
To Be Published
7NZ5
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BU of 7nz5 by Molmil
monomeric acetyl-CoA synthase with Zn at the proximal position of cluster A
Descriptor: (R,R)-2,3-BUTANEDIOL, 2-[3,8,8,12,12-pentakis(2-hydroxy-2-oxoethyl)-2,7,11-tris(oxidanylidene)-1,4,6,9,10,13-hexaoxa-5$l^{6}-titanaspiro[4.4^{5}.4^{5}]tridecan-3-yl]ethanoic acid, CITRIC ACID, ...
Authors:Kreibich, J, Jeoung, J.H, Dobbek, H.
Deposit date:2021-03-23
Release date:2022-04-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Ligand binding at the Ni,Ni-[4Fe-4S] cluster of acetyl-CoA synthase
To Be Published
7NYP
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BU of 7nyp by Molmil
monomeric acetyl-CoA synthase in closed conformation
Descriptor: 2-[3,8,8,12,12-pentakis(2-hydroxy-2-oxoethyl)-2,7,11-tris(oxidanylidene)-1,4,6,9,10,13-hexaoxa-5$l^{6}-titanaspiro[4.4^{5}.4^{5}]tridecan-3-yl]ethanoic acid, CO-methylating acetyl-CoA synthase, DI(HYDROXYETHYL)ETHER, ...
Authors:Kreibich, J, Jeoung, J.H, Dobbek, H.
Deposit date:2021-03-23
Release date:2022-04-13
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Ligand binding at the Ni,Ni-[4Fe-4S] cluster of acetyl-CoA synthase
To Be Published
1RU3
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BU of 1ru3 by Molmil
Crystal Structure of the monomeric acetyl-CoA synthase from Carboxydothermus hydrogenoformans
Descriptor: Acetyl-CoA synthase, GLYCEROL, IRON/SULFUR CLUSTER, ...
Authors:Svetlitchnyi, V, Dobbek, H, Meyer-Klaucke, W, Meins, T, Thiele, B, Rmer, P, Huber, R, Meyer, O.
Deposit date:2003-12-11
Release date:2003-12-23
Last modified:2019-11-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A functional Ni-Ni-[4Fe-4S] cluster in the monomeric acetyl-CoA synthase from Carboxydothermus hydrogenoformans
Proc.Natl.Acad.Sci.USA, 101, 2004
4C1N
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BU of 4c1n by Molmil
Corrinoid protein reactivation complex with activator
Descriptor: CARBON MONOXIDE DEHYDROGENASE CORRINOID/IRON-SULFUR PROTEIN, GAMMA SUBUNIT, CO DEHYDROGENASE/ACETYL-COA SYNTHASE, ...
Authors:Hennig, S.E, Goetzl, S, Jeoung, J.H, Bommer, M, Lendzian, F, Hildebrandt, P, Dobbek, H.
Deposit date:2013-08-13
Release date:2014-08-13
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.53 Å)
Cite:ATP-Induced Electron Transfer by Redox-Selective Partner Recognition
Nat.Commun., 5, 2014
2YCK
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BU of 2yck by Molmil
methyltransferase bound with tetrahydrofolate
Descriptor: (6S)-5,6,7,8-TETRAHYDROFOLATE, 5-METHYLTETRAHYDROFOLATE CORRINOID/IRON SULFUR PROTEIN METHYLTRANSFERASE, GLYCEROL, ...
Authors:Goetzl, S, Jeoung, J.-H, Hennig, S.E, Dobbek, H.
Deposit date:2011-03-16
Release date:2011-06-08
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural Basis for Electron and Methyl-Group Transfer in a Methyltransferase System Operating in the Reductive Acetyl-Coa Pathway
J.Mol.Biol., 411, 2011
2YCL
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BU of 2ycl by Molmil
complete structure of the corrinoid,iron-sulfur protein including the N-terminal domain with a 4Fe-4S cluster
Descriptor: CARBON MONOXIDE DEHYDROGENASE CORRINOID/IRON-SULFUR PROTEIN, GAMMA SUBUNIT, CO DEHYDROGENASE/ACETYL-COA SYNTHASE, ...
Authors:Goetzl, S, Jeoung, J.H, Hennig, S.E, Dobbek, H.
Deposit date:2011-03-16
Release date:2011-06-08
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural Basis for Electron and Methyl-Group Transfer in a Methyltransferase System Operating in the Reductive Acetyl-Coa Pathway
J.Mol.Biol., 411, 2011
2YCJ
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BU of 2ycj by Molmil
methyltransferase bound with methyltetrahydrofolate
Descriptor: 5-METHYL-5,6,7,8-TETRAHYDROFOLIC ACID, 5-METHYLTETRAHYDROFOLATE CORRINOID/IRON SULFUR PROTEIN METHYLTRANSFERASE, GLYCEROL, ...
Authors:Goetzl, S, Jeoung, J.-H, Hennig, S.E, Dobbek, H.
Deposit date:2011-03-16
Release date:2011-06-08
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.96 Å)
Cite:Structural Basis for Electron and Methyl-Group Transfer in a Methyltransferase System Operating in the Reductive Acetyl-Coa Pathway
J.Mol.Biol., 411, 2011
2YCI
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BU of 2yci by Molmil
methyltransferase native
Descriptor: 5-METHYLTETRAHYDROFOLATE CORRINOID/IRON SULFUR PROTEIN METHYLTRANSFERASE, SULFATE ION
Authors:Goetzl, S, Jeoung, J.H, Hennig, S.E, Dobbek, H.
Deposit date:2011-03-16
Release date:2011-06-08
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Structural Basis for Electron and Methyl-Group Transfer in a Methyltransferase System Operating in the Reductive Acetyl-Coa Pathway
J.Mol.Biol., 411, 2011
4EHU
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BU of 4ehu by Molmil
Activator of the 2-Hydroxyisocaproyl-CoA Dehydratase from Clostridium difficile with bound ADPNP
Descriptor: ACETATE ION, Activator of 2-hydroxyisocaproyl-CoA dehydratase, IRON/SULFUR CLUSTER, ...
Authors:Knauer, S.H, Dobbek, H.
Deposit date:2012-04-04
Release date:2012-08-08
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:On the ATP-Dependent Activation of the Radical Enzyme (R)-2-Hydroxyisocaproyl-CoA Dehydratase.
Biochemistry, 51, 2012
4EHT
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BU of 4eht by Molmil
Activator of the 2-Hydroxyisocaproyl-CoA dehydratase from Clostridium difficile with bound ADP
Descriptor: ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, AMMONIUM ION, ...
Authors:Knauer, S.H, Dobbek, H.
Deposit date:2012-04-04
Release date:2012-08-08
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:On the ATP-Dependent Activation of the Radical Enzyme (R)-2-Hydroxyisocaproyl-CoA Dehydratase.
Biochemistry, 51, 2012
1U8V
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BU of 1u8v by Molmil
Crystal Structure of 4-Hydroxybutyryl-CoA Dehydratase from Clostridium aminobutyricum: Radical catalysis involving a [4Fe-4S] cluster and flavin
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Gamma-aminobutyrate metabolism dehydratase/isomerase, IRON/SULFUR CLUSTER
Authors:Martins, B.M, Dobbek, H, Cinkaya, I, Buckel, W, Messerschmidt, A.
Deposit date:2004-08-07
Release date:2004-12-21
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of 4-hydroxybutyryl-CoA dehydratase: radical catalysis involving a [4Fe-4S] cluster and flavin.
Proc.Natl.Acad.Sci.USA, 101, 2004
1T3Q
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BU of 1t3q by Molmil
Crystal structure of quinoline 2-Oxidoreductase from Pseudomonas Putida 86
Descriptor: DIOXOSULFIDOMOLYBDENUM(VI) ION, FE2/S2 (INORGANIC) CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Bonin, I, Martins, B.M, Purvanov, V, Fetzner, S, Huber, R, Dobbek, H.
Deposit date:2004-04-27
Release date:2004-09-14
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Active site geometry and substrate recognition of the molybdenum hydroxylase quinoline 2-oxidoreductase.
STRUCTURE, 12, 2004
4AQ4
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BU of 4aq4 by Molmil
substrate bound sn-glycerol-3-phosphate binding periplasmic protein ugpB from Escherichia coli
Descriptor: CADMIUM ION, COBALT (II) ION, GLYCEROL, ...
Authors:Wuttge, S, Bommer, M, Jaeger, F, Martins, B.M, Jacob, S, Licht, A, Scheffel, F, Dobbek, H, Schneider, E.
Deposit date:2012-04-13
Release date:2012-10-17
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Determinants of Substrate Specificity and Biochemical Properties of the Sn-Glycerol-3-Phosphate ATP Binding Cassette Transporter (Ugpb-Aec(2) ) of Escherichia Coli.
Mol.Microbiol., 86, 2012
4EIA
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BU of 4eia by Molmil
Activator of the 2-Hydroxyisocaproyl-CoA Dehydratase from Clostridium difficile without nucleotide
Descriptor: Activator of 2-hydroxyisocaproyl-CoA dehydratase, IRON/SULFUR CLUSTER
Authors:Knauer, S.H, Dobbek, H.
Deposit date:2012-04-05
Release date:2012-08-08
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:On the ATP-Dependent Activation of the Radical Enzyme (R)-2-Hydroxyisocaproyl-CoA Dehydratase.
Biochemistry, 51, 2012
4EMI
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BU of 4emi by Molmil
Toluene dioxygenase reductase in reduced state in complex with NAD+
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, TodA
Authors:Lin, T.Y, Werther, T, Jeoung, J.H, Dobbek, H.
Deposit date:2012-04-12
Release date:2012-09-26
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.806 Å)
Cite:Suppression of Electron Transfer to Dioxygen by Charge Transfer and Electron Transfer Complexes in the FAD-dependent Reductase Component of Toluene Dioxygenase.
J.Biol.Chem., 287, 2012
4EMJ
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BU of 4emj by Molmil
Complex between the reductase and ferredoxin components of toluene dioxygenase
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, TodA, ...
Authors:Lin, T.Y, Werther, T, Jeoung, J.H, Dobbek, H.
Deposit date:2012-04-12
Release date:2012-09-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Suppression of Electron Transfer to Dioxygen by Charge Transfer and Electron Transfer Complexes in the FAD-dependent Reductase Component of Toluene Dioxygenase.
J.Biol.Chem., 287, 2012
2YIV
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BU of 2yiv by Molmil
NI,FE-CODH with n-butylisocyanate state
Descriptor: CARBON MONOXIDE DEHYDROGENASE 2, FE (III) ION, FE(3)-NI(1)-S(4) CLUSTER, ...
Authors:Jeoung, J.H, Dobbek, H.
Deposit date:2011-05-16
Release date:2012-03-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:N-Butyl Isocyanide Oxidation at the [Nife4S4Oh(X)] Cluster of Co Dehydrogenase.
J.Biol.Inorg.Chem., 17, 2012

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