7RF1
| RT XFEL structure of Photosystem II averaged across all S-states at 1.89 Angstrom resolution | Descriptor: | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... | Authors: | Hussein, R, Ibrahim, M, Bhowmick, A, Simon, P.S, Chatterjee, R, Lassalle, L, Doyle, M.D, Bogacz, I, Kim, I.-S, Cheah, M.H, Gul, S, de Lichtenberg, C, Chernev, P, Pham, C.C, Young, I.D, Carbajo, S, Fuller, F.D, Alonso-Mori, R, Batyuk, A, Sutherlin, K.D, Brewster, A.S, Bolotovski, R, Mendez, D, Holton, J.M, Moriarty, N.W, Adams, P.D, Bergmann, U, Sauter, N.K, Dobbek, H, Messinger, J, Zouni, A, Kern, J, Yachandra, V.K, Yano, J. | Deposit date: | 2021-07-13 | Release date: | 2021-11-10 | Last modified: | 2023-10-18 | Method: | X-RAY DIFFRACTION (1.89 Å) | Cite: | Structural dynamics in the water and proton channels of photosystem II during the S 2 to S 3 transition. Nat Commun, 12, 2021
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6ELQ
| Carbon Monoxide Dehydrogenase IV from Carboxydothermus hydrogenoformans | Descriptor: | Carbon Monoxide Dehydrogenase, FE(4)-NI(1)-S(5) CLUSTER with Oxygen, IRON/SULFUR CLUSTER | Authors: | Domnik, L, Goetzl, S, Jeoung, J.H, Dobbek, H. | Deposit date: | 2017-09-29 | Release date: | 2018-01-03 | Last modified: | 2024-05-08 | Method: | X-RAY DIFFRACTION (2.52 Å) | Cite: | CODH-IV: A High-Efficiency CO-Scavenging CO Dehydrogenase with Resistance to O2. Angew. Chem. Int. Ed. Engl., 56, 2017
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7ZXX
| K563H Mutant of Recombinant CODH-II | Descriptor: | Carbon monoxide dehydrogenase 2, DI(HYDROXYETHYL)ETHER, FE2/S2 (INORGANIC) CLUSTER, ... | Authors: | Basak, Y, Jeoung, J.H, Dobbek, H. | Deposit date: | 2022-05-23 | Release date: | 2023-03-15 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | Substrate Activation at the Ni,Fe Cluster of CO Dehydrogenases: The Influence of the Protein Matrix Acs Catalysis, 2022
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7ZY1
| I567A Mutant of Recombinant CODH-II | Descriptor: | Carbon monoxide dehydrogenase 2, FE (II) ION, FE(3)-NI(1)-S(4) CLUSTER, ... | Authors: | Basak, Y, Jeoung, J.H, Dobbek, H. | Deposit date: | 2022-05-23 | Release date: | 2023-03-15 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (1.434 Å) | Cite: | Substrate Activation at the Ni,Fe Cluster of CO Dehydrogenases: The Influence of the Protein Matrix Acs Catalysis, 2022
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7ZXC
| H96D Mutant of Recombinant CODH-II | Descriptor: | Carbon monoxide dehydrogenase 2, FE (III) ION, FE(3)-NI(1)-S(4) CLUSTER, ... | Authors: | Basak, Y, Jeoung, J.H, Dobbek, H. | Deposit date: | 2022-05-20 | Release date: | 2023-03-15 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (1.696 Å) | Cite: | Substrate Activation at the Ni,Fe Cluster of CO Dehydrogenases: The Influence of the Protein Matrix Acs Catalysis, 2022
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7ZX5
| I567T Mutant of Recombinant CODH-II | Descriptor: | Carbon monoxide dehydrogenase 2, FE (II) ION, FE(3)-NI(1)-S(4) CLUSTER, ... | Authors: | Basak, Y, Jeoung, J.H, Dobbek, H. | Deposit date: | 2022-05-20 | Release date: | 2023-03-15 | Last modified: | 2024-02-07 | Method: | X-RAY DIFFRACTION (1.544 Å) | Cite: | Substrate Activation at the Ni,Fe Cluster of CO Dehydrogenases: The Influence of the Protein Matrix Acs Catalysis, 2022
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6G2G
| Fe-S assembly Cfd1 | Descriptor: | Cytosolic Fe-S cluster assembly factor CFD1, IRON/SULFUR CLUSTER, SULFATE ION | Authors: | Jeoung, J.H, Dobbek, H. | Deposit date: | 2018-03-23 | Release date: | 2019-01-23 | Last modified: | 2024-05-08 | Method: | X-RAY DIFFRACTION (2.57 Å) | Cite: | Function and crystal structure of the dimeric P-loop ATPase CFD1 coordinating an exposed [4Fe-4S] cluster for transfer to apoproteins. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
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3ZDS
| Structure of homogentisate 1,2-dioxygenase in complex with reaction intermediates of homogentisate with oxygen. | Descriptor: | 2-(3,6-DIHYDROXYPHENYL)ACETIC ACID, 2-(6-oxidanyl-3-oxidanylidene-cyclohexa-1,4-dien-1-yl)ethanoic acid, 2-[(6R)-6-(dioxidanyl)-6-oxidanyl-3-oxidanylidene-cyclohexa-1,4-dien-1-yl]ethanoic acid, ... | Authors: | Jeoung, J.-H, Bommer, M, Lin, T.-Y, Dobbek, H. | Deposit date: | 2012-11-30 | Release date: | 2013-07-24 | Last modified: | 2023-12-20 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Visualizing the Substrate-, Superoxo-, Alkylperoxo- and Product-Bound States at the Non-Heme Fe(II) Site of Homogentisate Dioxygenase Proc.Natl.Acad.Sci.USA, 110, 2013
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3I39
| NI,FE-CODH-320 MV+CN state | Descriptor: | CYANIDE ION, Carbon monoxide dehydrogenase 2, FE (II) ION, ... | Authors: | Jeoung, J.-H, Dobbek, H. | Deposit date: | 2009-06-30 | Release date: | 2009-08-11 | Last modified: | 2024-02-21 | Method: | X-RAY DIFFRACTION (1.36 Å) | Cite: | Structural basis of cyanide inhibition of Ni, Fe-containing carbon monoxide dehydrogenase J.Am.Chem.Soc., 131, 2009
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3KJI
| Zn and ADP bound state of CooC1 | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC, ... | Authors: | Jeoung, J.-H, Dobbek, H. | Deposit date: | 2009-11-03 | Release date: | 2010-01-19 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.13 Å) | Cite: | Crystal Structure of the ATP-Dependent Maturation Factor of Ni,Fe-Containing Carbon Monoxide Dehydrogenases J.Mol.Biol., 396, 2010
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3HRD
| Crystal structure of nicotinate dehydrogenase | Descriptor: | CALCIUM ION, DIOXOTHIOMOLYBDENUM(VI) ION, FE2/S2 (INORGANIC) CLUSTER, ... | Authors: | Wagener, N, Pierik, A.J, Hille, R, Dobbek, H. | Deposit date: | 2009-06-09 | Release date: | 2009-06-30 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | The Mo-Se active site of nicotinate dehydrogenase Proc.Natl.Acad.Sci.USA, 106, 2009
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6ENO
| Double cubane cluster oxidoreductase | Descriptor: | CITRIC ACID, Dehydratase family protein, Double cubane cluster, ... | Authors: | Jeoung, J.H, Dobbek, H. | Deposit date: | 2017-10-05 | Release date: | 2018-03-14 | Last modified: | 2024-05-08 | Method: | X-RAY DIFFRACTION (1.635 Å) | Cite: | ATP-dependent substrate reduction at an [Fe8S9] double-cubane cluster. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
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3KJH
| Zn-bound state of CooC1 | Descriptor: | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC, ZINC ION | Authors: | Jeoung, J.-H, Dobbek, H. | Deposit date: | 2009-11-03 | Release date: | 2010-01-19 | Last modified: | 2024-02-21 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal Structure of the ATP-Dependent Maturation Factor of Ni,Fe-Containing Carbon Monoxide Dehydrogenases J.Mol.Biol., 396, 2010
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4AQ2
| resting state of homogentisate 1,2-dioxygenase | Descriptor: | 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FE (III) ION, HOMOGENTISATE 1,2-DIOXYGENASE | Authors: | Jeoung, J.-H, Lin, T.-Y, Bommer, M, Dobbek, H. | Deposit date: | 2012-04-12 | Release date: | 2013-04-24 | Last modified: | 2023-12-20 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | Visualizing the Substrate-, Superoxo-, Alkylperoxo-, and Product-Bound States at the Nonheme Fe(II) Site of Homogentisate Dioxygenase. Proc.Natl.Acad.Sci.USA, 110, 2013
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3KJG
| ADP-bound state of CooC1 | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | Authors: | Jeoung, J.-H, Dobbek, H. | Deposit date: | 2009-11-03 | Release date: | 2010-01-19 | Last modified: | 2024-02-21 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal Structure of the ATP-Dependent Maturation Factor of Ni,Fe-Containing Carbon Monoxide Dehydrogenases J.Mol.Biol., 396, 2010
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4AQ6
| substrate bound homogentisate 1,2-dioxygenase | Descriptor: | 2-(3,6-DIHYDROXYPHENYL)ACETIC ACID, 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FE (III) ION, ... | Authors: | Jeoung, J.-H, Lin, T.-Y, Bommer, M, Dobbek, H. | Deposit date: | 2012-04-12 | Release date: | 2013-04-24 | Last modified: | 2023-12-20 | Method: | X-RAY DIFFRACTION (1.98 Å) | Cite: | Visualizing the Substrate-, Superoxo-, Alkylperoxo- and Product-Bound States at the Non-Heme Fe(II) Site of Homogentisate Dioxygenase Proc.Natl.Acad.Sci.USA, 110, 2013
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3KJE
| Empty state of CooC1 | Descriptor: | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | Authors: | Jeoung, J.-H, Dobbek, H. | Deposit date: | 2009-11-03 | Release date: | 2010-01-19 | Last modified: | 2024-02-21 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal Structure of the ATP-Dependent Maturation Factor of Ni,Fe-Containing Carbon Monoxide Dehydrogenases J.Mol.Biol., 396, 2010
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3V17
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7O90
| Mono-Fe-sulerythrin | Descriptor: | CHLORIDE ION, FE (III) ION, Sulerythrin | Authors: | Jeoung, J.-H, Dobbek, H. | Deposit date: | 2021-04-15 | Release date: | 2021-12-01 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (1.49 Å) | Cite: | Bimetallic Mn, Fe, Co, and Ni Sites in a Four-Helix Bundle Protein: Metal Binding, Structure, and Peroxide Activation. Inorg.Chem., 60, 2021
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7O93
| diMn-sulerythrin | Descriptor: | (R,R)-2,3-BUTANEDIOL, CHLORIDE ION, HYDROGEN PEROXIDE, ... | Authors: | Jeoung, J.-H, Dobbek, H. | Deposit date: | 2021-04-15 | Release date: | 2021-12-01 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (1.17 Å) | Cite: | Bimetallic Mn, Fe, Co, and Ni Sites in a Four-Helix Bundle Protein: Metal Binding, Structure, and Peroxide Activation. Inorg.Chem., 60, 2021
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7O9C
| diNi-sulerythrin treated by hydrogen perxoide | Descriptor: | CHLORIDE ION, NICKEL (II) ION, Sulerythrin | Authors: | Jeoung, J.-H, Dobbek, H. | Deposit date: | 2021-04-15 | Release date: | 2021-12-01 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Bimetallic Mn, Fe, Co, and Ni Sites in a Four-Helix Bundle Protein: Metal Binding, Structure, and Peroxide Activation. Inorg.Chem., 60, 2021
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7O8D
| diFe-sulerythrin oxidised by H2O2 | Descriptor: | CHLORIDE ION, FE (III) ION, Sulerythrin | Authors: | Jeoung, J.-H, Dobbek, H. | Deposit date: | 2021-04-15 | Release date: | 2021-12-01 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (1.12 Å) | Cite: | Bimetallic Mn, Fe, Co, and Ni Sites in a Four-Helix Bundle Protein: Metal Binding, Structure, and Peroxide Activation. Inorg.Chem., 60, 2021
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7O9D
| peroxide-bound diCo-sulerythrin | Descriptor: | CHLORIDE ION, COBALT (II) ION, HYDROGEN PEROXIDE, ... | Authors: | Jeoung, J.-H, Dobbek, H. | Deposit date: | 2021-04-15 | Release date: | 2021-12-01 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (1.28 Å) | Cite: | Bimetallic Mn, Fe, Co, and Ni Sites in a Four-Helix Bundle Protein: Metal Binding, Structure, and Peroxide Activation. Inorg.Chem., 60, 2021
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7O99
| diMn-sulerythrin | Descriptor: | CHLORIDE ION, COBALT (II) ION, Sulerythrin | Authors: | Jeoung, J.-H, Dobbek, H. | Deposit date: | 2021-04-15 | Release date: | 2021-12-01 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (1.24 Å) | Cite: | Bimetallic Mn, Fe, Co, and Ni Sites in a Four-Helix Bundle Protein: Metal Binding, Structure, and Peroxide Activation. Inorg.Chem., 60, 2021
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7O91
| diMn-sulerythrin | Descriptor: | CHLORIDE ION, DI(HYDROXYETHYL)ETHER, MANGANESE (II) ION, ... | Authors: | Jeoung, J.-H, Dobbek, H. | Deposit date: | 2021-04-15 | Release date: | 2021-12-01 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (1.1 Å) | Cite: | Bimetallic Mn, Fe, Co, and Ni Sites in a Four-Helix Bundle Protein: Metal Binding, Structure, and Peroxide Activation. Inorg.Chem., 60, 2021
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