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PDB: 1224 件

1CMQ
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SMALL MOLECULE BINDING TO AN ARTIFICIALLY CREATED CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE
分子名称: CYTOCHROME C PEROXIDASE, PROTOPORPHYRIN IX CONTAINING FE
著者Fitzgerald, M.M, Mcree, D.E, Churchill, M.J, Goodin, D.B.
登録日1993-11-23
公開日1994-01-31
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Small molecule binding to an artificially created cavity at the active site of cytochrome c peroxidase.
Biochemistry, 33, 1994
8W01
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Crystal structure of DUF1735 domain-containing protein (GH18-like) from Bacteroides faecium at 2.7 A resolution (Space group C2)
分子名称: DUF1735 domain-containing protein
著者Sastre, D.E, Navarro, M.V.A.S, Sultana, N, Sundberg, E.J.
登録日2024-02-13
公開日2024-05-29
最終更新日2024-06-26
実験手法X-RAY DIFFRACTION (2.67 Å)
主引用文献Human gut microbes express functionally distinct endoglycosidases to metabolize the same N-glycan substrate.
Nat Commun, 15, 2024
8W04
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Crystal structure of DUF1735-domain containing protein (GH18-like) from Bacteroides faecium at 2.9 A resolution (Space group P21)
分子名称: DUF1735 domain-containing protein
著者Sastre, D.E, Navarro, M.V.A.S, Sultana, N, Sundberg, E.J.
登録日2024-02-13
公開日2024-05-29
最終更新日2024-06-26
実験手法X-RAY DIFFRACTION (2.91 Å)
主引用文献Human gut microbes express functionally distinct endoglycosidases to metabolize the same N-glycan substrate.
Nat Commun, 15, 2024
3K3B
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Co-crystal structure of the human kinesin Eg5 with a novel tetrahydro-beta-carboline
分子名称: 3-[(1R)-2-acetyl-6-methyl-2,3,4,9-tetrahydro-1H-beta-carbolin-1-yl]phenol, ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, ...
著者Bussiere, D.E, Bellamacina, C, Le, V.
登録日2009-10-02
公開日2009-12-15
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The discovery of tetrahydro-beta-carbolines as inhibitors of the kinesin Eg5.
Bioorg.Med.Chem.Lett., 20, 2010
6REG
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Crystal structure of Pizza6-S with Zn2+
分子名称: GLYCEROL, Pizza6-S, ZINC ION
著者Noguchi, H, Clarke, D.E, Gryspeerdt, J.L, Feyter, S.D, Voet, A.R.D.
登録日2019-04-12
公開日2019-07-31
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Artificial beta-propeller protein-based hydrolases.
Chem.Commun.(Camb.), 55, 2019
6REK
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Crystal structure of Pizza6-SH with Cu2+
分子名称: COPPER (II) ION, GLYCEROL, Pizza6-SH
著者Noguchi, H, Clarke, D.E, Gryspeerdt, J.L, Feyter, S.D, Voet, A.R.D.
登録日2019-04-12
公開日2019-07-31
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Artificial beta-propeller protein-based hydrolases.
Chem.Commun.(Camb.), 55, 2019
3RV0
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Crystal structure of K. polysporus Dcr1 without the C-terminal dsRBD
分子名称: K. polysporus Dcr1, MAGNESIUM ION
著者Nakanishi, K, Weinberg, D.E, Bartel, D.P, Patel, D.J.
登録日2011-05-05
公開日2011-08-03
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.29 Å)
主引用文献The inside-out mechanism of dicers from budding yeasts.
Cell(Cambridge,Mass.), 146, 2011
8U9F
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Crystal structure of Bacteroides thetaiotamicron BT1285 in complex with NaI
分子名称: 1,2-ETHANEDIOL, Endo-beta-N-acetylglucosaminidase, IODIDE ION, ...
著者Sastre, D.E, Navarro, M.V.A.S, Sundberg, E.J.
登録日2023-09-19
公開日2024-05-29
最終更新日2024-06-26
実験手法X-RAY DIFFRACTION (1.08 Å)
主引用文献Human gut microbes express functionally distinct endoglycosidases to metabolize the same N-glycan substrate.
Nat Commun, 15, 2024
3JCR
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3D structure determination of the human*U4/U6.U5* tri-snRNP complex
分子名称: LSm2, LSm3, LSm4, ...
著者Agafonov, D.E, Kastner, B, Dybkov, O, Hofele, R.V, Liu, W.T, Urlaub, H, Luhrmann, R, Stark, H.
登録日2016-01-21
公開日2016-03-09
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (7 Å)
主引用文献Molecular architecture of the human U4/U6.U5 tri-snRNP.
Science, 351, 2016
8VZ4
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L54G Mutant of E. coli Dihydrofolate Reductase Complexed with Nicotinamide Adenine Dinucleotide Phosphate (oxidized form)
分子名称: Dihydrofolate reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Fried, S.D.E, Boxer, S.G.
登録日2024-02-09
公開日2024-04-17
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献Role of Electrostatics in Hydride Transfer by Dihydrofolate Reductase
To Be Published
1C06
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SOLUTION STRUCTURE OF RIBOSOMAL PROTEIN S4 DELTA 41, REFINED WITH DIPOLAR COUPLINGS (ENSEMBLE OF 16 STRUCTURES)
分子名称: RIBOSOMAL PROTEIN S4 DELTA 41
著者Markus, M.A, Gerstner, R.B, Draper, D.E, Torchia, D.A.
登録日1999-07-14
公開日1999-09-29
最終更新日2024-04-10
実験手法SOLUTION NMR
主引用文献Refining the overall structure and subdomain orientation of ribosomal protein S4 delta41 with dipolar couplings measured by NMR in uniaxial liquid crystalline phases.
J.Mol.Biol., 292, 1999
6Q4Z
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Structure of an inactive variant (D94N) of MPT-2, a GDP-Man-dependent mannosyltransferase from Leishmania mexicana, in complex with beta-1,2-mannobiose
分子名称: LmxM MPT-2 D94N, beta-D-mannopyranose-(1-2)-alpha-D-mannopyranose
著者Sobala, L.F, Males, A, Bastidas, L.M, Ward, T, Sernee, M.F, Ralton, J.E, Nero, T.L, Kloehn, J, Viera-Lara, M, Stanton, L, Cobbold, S, Pires, D.E, Hanssen, E, Parker, M.W, Ascher, D.B, Williams, S.J, McConville, M.J, Davies, G.J.
登録日2018-12-06
公開日2019-09-25
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献A Family of Dual-Activity Glycosyltransferase-Phosphorylases Mediates Mannogen Turnover and Virulence in Leishmania Parasites.
Cell Host Microbe, 26, 2019
3VDI
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BU of 3vdi by Molmil
Structure of the FMO protein from Pelodictyon phaeum
分子名称: BACTERIOCHLOROPHYLL A, TETRAETHYLENE GLYCOL, bacteriochlorophyll A protein
著者Tronrud, D.E, Larson, C.R, Seng, C.O, Lauman, L, Matthies, H.J, Wen, J, Blankenship, R.E, Allen, J.P.
登録日2012-01-05
公開日2012-01-25
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Reinterpretation of the electron density at the site of the eighth bacteriochlorophyll in the FMO protein from Pelodictyon phaeum.
Photosynth.Res., 112, 2012
3K6T
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BU of 3k6t by Molmil
Crystal structure of the GLD-1 homodimerization domain from Caenorhabditis elegans at 2.04 A resolution
分子名称: Female germline-specific tumor suppressor gld-1
著者Beuck, C, Szymczyna, B.R, Kerkow, D.E, Carmel, A.B, Columbus, L, Stanfield, R.L, Williamson, J.R.
登録日2009-10-09
公開日2010-03-09
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献Structure of the GLD-1 homodimerization domain: insights into STAR protein-mediated translational regulation.
Structure, 18, 2010
8U47
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Crystal structure of Bacteroides thetaiotaomicron VPI-5482 Endoglycosidase BT1285
分子名称: Endo-beta-N-acetylglucosaminidase, MAGNESIUM ION, PHOSPHATE ION
著者Sastre, D.E, Sultana, N, Sundberg, E.J.
登録日2023-09-09
公開日2024-05-29
最終更新日2024-06-26
実験手法X-RAY DIFFRACTION (1.33 Å)
主引用文献Human gut microbes express functionally distinct endoglycosidases to metabolize the same N-glycan substrate.
Nat Commun, 15, 2024
3SNF
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BU of 3snf by Molmil
Onconase, atomic resolution crystal structure
分子名称: ACETATE ION, Protein P-30, SULFATE ION
著者Holloway, D.E, Singh, U.P, Shogen, K, Acharya, K.R.
登録日2011-06-29
公開日2011-10-05
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Crystal structure of Onconase at 1.1 angstrom resolution--insights into substrate binding and collective motion.
Febs J., 278, 2011
8U46
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Crystal structure of Bacteroides thetaiotaomicron VPI-5482 Endoglycosidase BT1285 D161A-E163A inactive version
分子名称: Endo-beta-N-acetylglucosaminidase
著者Sastre, D.E, Sultana, N, Sundberg, E.J.
登録日2023-09-09
公開日2024-05-29
最終更新日2024-06-26
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Human gut microbes express functionally distinct endoglycosidases to metabolize the same N-glycan substrate.
Nat Commun, 15, 2024
3KBK
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Epi-isozizaene synthase complexed with Hg
分子名称: CHLORIDE ION, Epi-isozizaene synthase, MERCURY (II) ION, ...
著者Aaron, J.A, Lin, X, Cane, D.E, Christianson, D.W.
登録日2009-10-20
公開日2010-02-09
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of Epi-Isozizaene Synthase from Streptomyces coelicolor A3(2), a Platform for New Terpenoid Cyclization Templates
Biochemistry, 49, 2010
8U48
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Crystal structure of Bacteroides thetaiotamicron BT1285 D161A-E163A inactive Endoglycosidase in complex with high-mannose N-glycan (Man9GlcNAc2) substrate
分子名称: Endo-beta-N-acetylglucosaminidase, PHOSPHATE ION, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
著者Sastre, D.E, Sultana, N, Navarro, M.V.A.S, Sundberg, E.J.
登録日2023-09-09
公開日2024-05-29
最終更新日2024-06-26
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Human gut microbes express functionally distinct endoglycosidases to metabolize the same N-glycan substrate.
Nat Commun, 15, 2024
1DJM
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SOLUTION STRUCTURE OF BEF3-ACTIVATED CHEY FROM ESCHERICHIA COLI
分子名称: CHEMOTAXIS PROTEIN Y
著者Cho, H.S, Lee, S.Y, Yan, D, Pan, X, Parkinson, J.S, Kustu, S, Wemmer, D.E, Pelton, J.G.
登録日1999-12-03
公開日2000-04-05
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献NMR structure of activated CheY.
J.Mol.Biol., 297, 2000
1ECI
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ECTATOMIN (WATER SOLUTION, NMR 20 STRUCTURES)
分子名称: ECTATOMIN
著者Nolde, D.E, Sobol, A.G, Pluzhnikov, K.A, Arseniev, A.S, Grishin, E.V.
登録日1995-08-16
公開日1995-12-07
最終更新日2022-02-16
実験手法SOLUTION NMR
主引用文献Three-dimensional structure of ectatomin from Ectatomma tuberculatum ant venom.
J.Biomol.NMR, 5, 1995
1CMP
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SMALL MOLECULE BINDING TO AN ARTIFICIALLY CREATED CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE
分子名称: 2,3-DIMETHYLIMIDAZOLIUM ION, CYTOCHROME C PEROXIDASE, PROTOPORPHYRIN IX CONTAINING FE
著者Fitzgerald, M.M, Mcree, D.E, Churchill, M.J, Goodin, D.B.
登録日1993-11-23
公開日1994-01-31
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Small molecule binding to an artificially created cavity at the active site of cytochrome c peroxidase.
Biochemistry, 33, 1994
1C05
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BU of 1c05 by Molmil
SOLUTION STRUCTURE OF RIBOSOMAL PROTEIN S4 DELTA 41, REFINED WITH DIPOLAR COUPLINGS (MINIMIZED AVERAGE STRUCTURE)
分子名称: RIBOSOMAL PROTEIN S4 DELTA 41
著者Markus, M.A, Gerstner, R.B, Draper, D.E, Torchia, D.A.
登録日1999-07-14
公開日1999-09-29
最終更新日2024-04-10
実験手法SOLUTION NMR
主引用文献Refining the overall structure and subdomain orientation of ribosomal protein S4 delta41 with dipolar couplings measured by NMR in uniaxial liquid crystalline phases.
J.Mol.Biol., 292, 1999
6THH
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BU of 6thh by Molmil
Crystal structure of type I-D CRISPR-Cas nuclease Cas10d in complex with the SIRV3 AcrID1 (gp02) anti-CRISPR protein
分子名称: CRISPR-associated protein, CscA, PHOSPHATE ION, ...
著者Manav, M.C, Brodersen, D.E.
登録日2019-11-20
公開日2020-10-28
最終更新日2021-06-30
実験手法X-RAY DIFFRACTION (3.48 Å)
主引用文献Structural basis for inhibition of an archaeal CRISPR-Cas type I-D large subunit by an anti-CRISPR protein.
Nat Commun, 11, 2020
3TRW
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Crystal structure of racemic villin headpiece subdomain crystallized in space group P-1
分子名称: Villin-1
著者Mortenson, D.E, Satyshur, K.A, Gellman, S.H, Forest, K.T.
登録日2011-09-11
公開日2012-01-25
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Quasiracemic crystallization as a tool to assess the accommodation of noncanonical residues in nativelike protein conformations.
J.Am.Chem.Soc., 134, 2012

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