Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 52974 件

1T96
DownloadVisualize
BU of 1t96 by Molmil
r106g kdo8ps with pep
分子名称: 2-dehydro-3-deoxyphosphooctonate aldolase, CADMIUM ION, PHOSPHATE ION, ...
著者Gatti, D.L.
登録日2004-05-14
公開日2005-06-14
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Effects of the Arg106==>Gly mutation on the catalytic and conformational cycle of Aquifex aeolicus KDO8P synthase.
To be Published
6W79
DownloadVisualize
BU of 6w79 by Molmil
Structure of SARS-CoV main protease bound to potent broad-spectrum non-covalent inhibitor X77
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DIMETHYL SULFOXIDE, Main protease, ...
著者Mesecar, A.D, StJohn, S, Center for Structural Genomics of Infectious Diseases (CSGID)
登録日2020-03-18
公開日2020-08-26
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.46 Å)
主引用文献A taxonomically-driven approach to development of potent, broad-spectrum inhibitors of coronavirus main protease including SARS-CoV-2 (COVID-19)
To Be Published
8A9A
DownloadVisualize
BU of 8a9a by Molmil
Single Particle cryo-EM of the lipid binding protein P116 (MPN213) from Mycoplasma pneumoniae at 3.3 Angstrom resolution.
分子名称: Lipid binding protein P116 (MPN213)
著者Sprankel, L, Vizarraga, D.
登録日2022-06-28
公開日2023-02-22
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Essential protein P116 extracts cholesterol and other indispensable lipids for Mycoplasmas.
Nat.Struct.Mol.Biol., 30, 2023
8TJN
DownloadVisualize
BU of 8tjn by Molmil
Crosslinked 6-deoxyerythronolide B synthase (DEBS) Module 1 in complex with antibody fragment 1B2: Crosslinked State 1
分子名称: Antibody Fragment 1B2, Heavy Chain, Light Chain, ...
著者Cogan, D.P, Soohoo, A.M, Chen, M, Brodsky, K.L, Liu, Y, Khosla, C.
登録日2023-07-23
公開日2024-07-24
実験手法ELECTRON MICROSCOPY (3.73 Å)
主引用文献Structural Basis for Intermodular Communication in Assembly-Line Polyketide Biosynthesis
To Be Published
4R9U
DownloadVisualize
BU of 4r9u by Molmil
Structure of vitamin B12 transporter BtuCD in a nucleotide-bound outward facing state
分子名称: LAURYL DIMETHYLAMINE-N-OXIDE, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
著者Korkhov, V.M, Mireku, S.A, Veprintsev, D.B, Locher, K.P.
登録日2014-09-08
公開日2014-11-19
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.785 Å)
主引用文献Structure of AMP-PNP-bound BtuCD and mechanism of ATP-powered vitamin B12 transport by BtuCD-F.
Nat.Struct.Mol.Biol., 21, 2014
6VQT
DownloadVisualize
BU of 6vqt by Molmil
Structure of a bacterial Atm1-family ABC exporter with MgADPVO4 bound
分子名称: ADENOSINE-5'-DIPHOSPHATE, ATM1-type heavy metal exporter, MAGNESIUM ION, ...
著者Fan, C, Rees, D.C.
登録日2020-02-05
公開日2020-07-29
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.03 Å)
主引用文献A structural framework for unidirectional transport by a bacterial ABC exporter.
Proc.Natl.Acad.Sci.USA, 117, 2020
4R4C
DownloadVisualize
BU of 4r4c by Molmil
Structure of RPA70N in complex with 5-(4-((4-(5-carboxyfuran-2-yl)-2-chlorobenzamido)methyl)phenyl)-1-(3,4-dichlorophenyl)-1H-pyrazole-3-carboxylic acid
分子名称: 5-[4-({[4-(5-carboxyfuran-2-yl)-2-chlorobenzoyl]amino}methyl)phenyl]-1-(3,4-dichlorophenyl)-1H-pyrazole-3-carboxylic acid, Replication protein A 70 kDa DNA-binding subunit
著者Feldkamp, M.D, Waterson, A.G, Kennedy, J.P, Patrone, J.D, Pelz, N.F, Frank, A.O, Vangamudi, B, Sousa-Fagundes, E.M, Rossanese, O.W, Fesik, S.W, Chazin, W.J.
登録日2014-08-19
公開日2014-11-19
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Diphenylpyrazoles as replication protein a inhibitors.
ACS Med Chem Lett, 6, 2015
4ID7
DownloadVisualize
BU of 4id7 by Molmil
ACK1 kinase in complex with the inhibitor cis-3-[8-amino-1-(4-phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol
分子名称: Activated CDC42 kinase 1, SULFATE ION, cis-3-[8-amino-1-(4-phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol
著者Jin, M, Wang, J, Kleinberg, A, Kadalbajoo, M, Siu, K, Cooke, A, Bittner, M, Yao, Y, Thelemann, A, Ji, Q, Bhagwat, S, Crew, A.P, Pachter, J, Epstein, D, Mulvihill, M.J.
登録日2012-12-11
公開日2013-01-30
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Discovery of potent, selective and orally bioavailable imidazo[1,5-a]pyrazine derived ACK1 inhibitors.
Bioorg.Med.Chem.Lett., 23, 2013
6W19
DownloadVisualize
BU of 6w19 by Molmil
Structures of Capsid and Capsid-Associated Tegument Complex inside the Epstein-Barr Virus
分子名称: Major capsid protein, Small capsomere-interacting protein, Triplex capsid protein 1, ...
著者Liu, W, Cui, Y.X, Wang, C.Y, Li, Z.H, Gong, D.Y, Dai, X.H, Bi, G.Q, Sun, R, Zhou, Z.H.
登録日2020-03-03
公開日2020-07-15
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (5.5 Å)
主引用文献Structures of capsid and capsid-associated tegument complex inside the Epstein-Barr virus.
Nat Microbiol, 5, 2020
6W5L
DownloadVisualize
BU of 6w5l by Molmil
2.1 A resolution structure of Norovirus 3CL protease in complex with inhibitor 7g
分子名称: (2~{S})-~{N}-[(1~{R})-1-[bis($l^{1}-oxidanyl)-methoxy-$l^{5}-sulfanyl]-1-oxidanyl-3-[(3~{R})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-2-[[[2-(3-chlorophenyl)-2-methyl-propoxy]-oxidanylidene-methyl]amino]-4-methyl-pentanamide, 3C-LIKE PROTEASE
著者Lovell, S, Kashipathy, M.M, Battaile, K.P, Rathnayake, A.D, Kim, Y, Chang, K.O, Groutas, W.C.
登録日2020-03-13
公開日2020-09-30
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure-Guided Optimization of Dipeptidyl Inhibitors of Norovirus 3CL Protease.
J.Med.Chem., 63, 2020
4II2
DownloadVisualize
BU of 4ii2 by Molmil
Crystal structure of Ubiquitin activating enzyme 1 (Uba1) in complex with the Ub E2 Ubc4, ubiquitin, and ATP/Mg
分子名称: 1,2-ETHANEDIOL, 2-(2-METHOXYETHOXY)ETHANOL, ADENOSINE-5'-TRIPHOSPHATE, ...
著者Olsen, S.K, Lima, C.D.
登録日2012-12-19
公開日2013-02-13
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure of a ubiquitin E1-E2 complex: insights to E1-E2 thioester transfer.
Mol.Cell, 49, 2013
8PTD
DownloadVisualize
BU of 8ptd by Molmil
The surface-exposed lipo-protein of BtuG1 in complex with cyanocobalamin.
分子名称: COBALAMIN, GLYCEROL, HYDROXIDE ION, ...
著者Whittaker, J, Felices Martinez, J.M, Guskov, A, Slotboom, D.J.
登録日2023-07-14
公開日2024-07-24
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The surface-exposed lipo-protein of BtuG1 in complex with cyanocobalamin.
To Be Published
7AUG
DownloadVisualize
BU of 7aug by Molmil
Crystal structure of rsGCamP1.3 in the ON state
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, FORMIC ACID, ...
著者Janowski, R, Fuenzalida-Werner, J.P, Mishra, K, Stiel, A.C, Niessing, D.
登録日2020-11-03
公開日2021-10-27
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.04 Å)
主引用文献Genetically encoded photo-switchable molecular sensors for optoacoustic and super-resolution imaging.
Nat.Biotechnol., 40, 2022
5V4S
DownloadVisualize
BU of 5v4s by Molmil
CryoEM Structure of a Prokaryotic Cyclic Nucleotide-Gated Ion Channel
分子名称: Transporter, cation channel family / cyclic nucleotide-binding domain multi-domain protein
著者James, Z.M, Borst, A.J, Haitin, Y, Frenz, B, DiMaio, F, Zagotta, W.N, Veesler, D.
登録日2017-03-10
公開日2017-04-12
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献CryoEM structure of a prokaryotic cyclic nucleotide-gated ion channel.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
9BNR
DownloadVisualize
BU of 9bnr by Molmil
4-(2-isothiocyanatoethyl)benzenesulfonamide complexed with Macrophage Migration Inhibitory Factor
分子名称: Macrophage migration inhibitory factor, N-[2-(4-sulfamoylphenyl)ethyl]methanethioamide, SULFATE ION
著者Fellner, M, Rutledge, M.T, Putha, L, Kok, L.K, Gamble, A.B, Wilbanks, S.M, Vernall, A.J, Tyndall, J.D.A.
登録日2024-05-02
公開日2024-07-24
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Covalent isothiocyanate inhibitors of macrophage migration inhibitory factor as potential colorectal cancer treatments.
Chemmedchem, 2024
9BNQ
DownloadVisualize
BU of 9bnq by Molmil
N-(4-(isothiocyanatomethyl)phenyl)methanesulfonamide complexed with Macrophage Migration Inhibitory Factor
分子名称: ISOPROPYL ALCOHOL, Macrophage migration inhibitory factor, N-{[4-(methanesulfonamido)phenyl]methyl}methanethioamide, ...
著者Fellner, M, Rutledge, M.T, Putha, L, Kok, L.K, Gamble, A.B, Wilbanks, S.M, Vernall, A.J, Tyndall, J.D.A.
登録日2024-05-02
公開日2024-07-24
実験手法X-RAY DIFFRACTION (1.09 Å)
主引用文献Covalent isothiocyanate inhibitors of macrophage migration inhibitory factor as potential colorectal cancer treatments.
Chemmedchem, 2024
1TGZ
DownloadVisualize
BU of 1tgz by Molmil
Structure of human Senp2 in complex with SUMO-1
分子名称: SULFATE ION, Sentrin-specific protease 2, Ubiquitin-like protein SMT3C
著者Reverter, D, Lima, C.D.
登録日2004-05-31
公開日2004-09-14
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献A basis for SUMO protease specificity provided by analysis of human Senp2 and a Senp2-SUMO complex
Structure, 12, 2004
7AZ5
DownloadVisualize
BU of 7az5 by Molmil
DNA polymerase sliding clamp from Escherichia coli with peptide 47 bound
分子名称: Beta sliding clamp, DI(HYDROXYETHYL)ETHER, Peptide 47, ...
著者Monsarrat, C, Compain, G, Andre, C, Martiel, I, Engilberge, S, Olieric, V, Wolff, P, Brillet, K, Landolfo, M, Silva da Veiga, C, Wagner, J, Guichard, G, Burnouf, D.Y.
登録日2020-11-16
公開日2021-12-01
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献Iterative Structure-Based Optimization of Short Peptides Targeting the Bacterial Sliding Clamp.
J.Med.Chem., 64, 2021
1JR3
DownloadVisualize
BU of 1jr3 by Molmil
Crystal Structure of the Processivity Clamp Loader Gamma Complex of E. coli DNA Polymerase III
分子名称: DNA polymerase III subunit gamma, DNA polymerase III, delta subunit, ...
著者Jeruzalmi, D, O'Donnell, M, Kuriyan, J.
登録日2001-08-10
公開日2001-09-26
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of the processivity clamp loader gamma (gamma) complex of E. coli DNA polymerase III.
Cell(Cambridge,Mass.), 106, 2001
5K8J
DownloadVisualize
BU of 5k8j by Molmil
Structure of Caulobacter crescentus VapBC1 (apo form)
分子名称: GLYCEROL, Ribonuclease VapC, VapB family protein
著者Bendtsen, K.L, Xu, K, Luckmann, M, Brodersen, D.E.
登録日2016-05-30
公開日2016-12-28
最終更新日2018-01-17
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Toxin inhibition in C. crescentus VapBC1 is mediated by a flexible pseudo-palindromic protein motif and modulated by DNA binding.
Nucleic Acids Res., 45, 2017
6W2R
DownloadVisualize
BU of 6w2r by Molmil
Junction 19, DHR54-DHR79
分子名称: Junction 19 DHR54-DHR79
著者Bick, M.J, Brunette, T.J, Baker, D.
登録日2020-03-08
公開日2020-04-15
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.344 Å)
主引用文献Modular repeat protein sculpting using rigid helical junctions.
Proc.Natl.Acad.Sci.USA, 117, 2020
2IFM
DownloadVisualize
BU of 2ifm by Molmil
PF1 FILAMENTOUS BACTERIOPHAGE: REFINEMENT OF A MOLECULAR MODEL BY SIMULATED ANNEALING USING 3.3 ANGSTROMS RESOLUTION X-RAY FIBRE DIFFRACTION DATA
分子名称: PF1 FILAMENTOUS BACTERIOPHAGE
著者Marvin, D.A.
登録日1995-01-16
公開日1996-01-01
最終更新日2024-02-21
実験手法FIBER DIFFRACTION (3.3 Å)
主引用文献Pf1 filamentous bacteriophage: refinement of a molecular model by simulated annealing using 3.3 A resolution X-ray fibre diffraction data.
Acta Crystallogr.,Sect.D, 51, 1995
3ZDW
DownloadVisualize
BU of 3zdw by Molmil
Substrate and dioxygen binding to the endospore coat laccase CotA from Bacillus subtilis
分子名称: 3-ETHYL-2-[(2Z)-2-(3-ETHYL-6-SULFO-1,3-BENZOTHIAZOL-2(3H)-YLIDENE)HYDRAZINO]-6-SULFO-3H-1,3-BENZOTHIAZOL-1-IUM, COPPER (I) ION, COTA LACCASE, ...
著者Enguita, F.J, Marcal, D, Grenha, R, Lindley, P.F, Carrondo, M.A.
登録日2012-12-01
公開日2012-12-19
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Substrate and Dioxygen Binding to the Endospore Coat Laccase from Bacillus Subtilis.
J.Biol.Chem., 279, 2004
5UZZ
DownloadVisualize
BU of 5uzz by Molmil
Structure of wild type pre-miR21 apical loop
分子名称: 14-mer Peptide, pre-miR21
著者Shortridge, M.D, Varani, G.
登録日2017-02-27
公開日2017-06-14
最終更新日2023-06-14
実験手法SOLUTION NMR
主引用文献A Macrocyclic Peptide Ligand Binds the Oncogenic MicroRNA-21 Precursor and Suppresses Dicer Processing.
ACS Chem. Biol., 12, 2017
7AP5
DownloadVisualize
BU of 7ap5 by Molmil
Crystal structure of phycoerythrin from cyanobacterium Nostoc sp. WR13 contains multiple stacks of hexameric assemblies which resemble the rods of phycobilisome.
分子名称: 1,2-ETHANEDIOL, 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL, 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL, ...
著者Patel, H.M, Roszak, A.W, Cogdell, R.J, Madamwar, D, Liu, H, Gross, M.L, Blankenship, R.E.
登録日2020-10-15
公開日2021-11-17
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.131 Å)
主引用文献The crystal stacks of hexameric assemblies of phycoerythrin from cyanobacterium Nostoc sp. WR13 resemble rods of phycobilisome
To Be Published

222926

件を2024-07-24に公開中

PDB statisticsPDBj update infoContact PDBjnumon