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PDB: 55924 件

4TTR
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BU of 4ttr by Molmil
Crystal structure of Legionella pneumophila dephospho-CoA kinase in complex with Bu2
分子名称: 1,3-BUTANEDIOL, Dephospho-CoA kinase, PHOSPHATE ION
著者Yu, D, Ge, H.
登録日2014-06-22
公開日2014-12-10
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of Legionella pneumophila dephospho-CoA kinase reveals a non-canonical conformation of P-loop.
J.Struct.Biol., 188, 2014
1F5H
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BU of 1f5h by Molmil
The G7(syn)-G4(anti) structure of r(GCAGGCGUGC)2
分子名称: 5'-R(*GP*CP*AP*GP*GP*CP*GP*UP*GP*C)-3'
著者Burkard, M.E, Turner, D.H.
登録日2000-06-14
公開日2000-06-26
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献NMR structures of r(GCAGGCGUGC)2 and determinants of stability for single guanosine-guanosine base pairs
Biochemistry, 39, 2000
7CQB
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BU of 7cqb by Molmil
Crystal structure of mutant of a Petase mutant
分子名称: Poly(ethylene terephthalate) hydrolase
著者Han, X, Liu, W.D, Zheng, Y.Y, Chen, C.C, Guo, R.T.
登録日2020-08-09
公開日2021-08-11
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Crystal structure of mutant of a Petase mutant
to be published
4XQD
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BU of 4xqd by Molmil
X-ray structure analysis of xylanase-WT at pH4.0
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Endo-1,4-beta-xylanase 2, IODIDE ION
著者Wan, Q, Park, J.M, Riccardi, D.M, Hanson, L.B, Fisher, Z, Smith, J.C, Ostermann, A, Schrader, T, Graham, D.E, Coates, L, Langan, P, Kovalevsky, A.Y.
登録日2015-01-19
公開日2015-09-23
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Direct determination of protonation states and visualization of hydrogen bonding in a glycoside hydrolase with neutron crystallography.
Proc.Natl.Acad.Sci.USA, 112, 2015
6I6S
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BU of 6i6s by Molmil
Circular permutant of ribosomal protein S6, adding 9aa to C terminal of P68-69, L75A mutant
分子名称: 30S ribosomal protein S6,30S ribosomal protein S6,30S ribosomal protein S6,30S ribosomal protein S6,30S ribosomal protein S6,30S ribosomal protein S6,30S ribosomal protein S6,30S ribosomal protein S6, POTASSIUM ION, SODIUM ION
著者Wang, H, Logan, D.T, Oliveberg, M.
登録日2018-11-15
公開日2019-11-27
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.46 Å)
主引用文献Exposing the distinctive modular behavior of beta-strands and alpha-helices in folded proteins.
Proc.Natl.Acad.Sci.USA, 117, 2020
7YNN
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BU of 7ynn by Molmil
ThT-bound alpha-synuclein fibrils conformation 2
分子名称: 2-[4-(dimethylamino)phenyl]-3,6-dimethyl-1,3-benzothiazol-3-ium, Alpha-synuclein
著者Tao, Y.Q, Zhao, Q.Y, Liu, C, Li, D.
登録日2022-07-31
公開日2023-08-02
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献ThT-bound alpha-synuclein fibrils conformation 2
To Be Published
6ZJ4
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BU of 6zj4 by Molmil
apo-Trehalose transferase (apo-TreT) from Thermoproteus uzoniensis
分子名称: THIOCYANATE ION, Trehalose phosphorylase/synthase
著者Bento, I, Mestrom, L, Marsden, S.R, van der Eijk, H, Laustsen, J.U, Jeffries, C.M, Svergun, D.I, Hagedoorn, P.-H, Hanefeld, U.
登録日2020-06-27
公開日2020-09-30
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Anomeric Selectivity of Trehalose Transferase with Rare l-Sugars.
Acs Catalysis, 10, 2020
1RE6
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BU of 1re6 by Molmil
Localisation of Dynein Light Chains 1 and 2 and their Pro-apoptotic Ligands
分子名称: dynein light chain 2
著者Day, C.L, Puthalakath, H, Skea, G, Strasser, A, Barsukov, I, Lian, L.Y, Huang, D.C, Hinds, M.G.
登録日2003-11-06
公開日2004-03-23
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Localization of dynein light chains 1 and 2 and their pro-apoptotic ligands.
Biochem.J., 377, 2004
7YNO
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BU of 7yno by Molmil
PiB-bound alpha-synuclein fibrils conformation 1
分子名称: 2-[4-(methylamino)phenyl]-1,3-benzothiazol-6-ol, Alpha-synuclein
著者Tao, Y.Q, Zhao, Q.Y, Liu, C, Li, D.
登録日2022-07-31
公開日2023-08-02
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献PiB-bound alpha-synuclein fibrils conformation 1
To Be Published
6WQZ
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BU of 6wqz by Molmil
Structure of human ATG9A, the only transmembrane protein of the core autophagy machinery
分子名称: Autophagy-related protein 9A, Lauryl Maltose Neopentyl Glycol
著者Guardia, C.M, Tan, X, Lian, T, Rana, M.S, Zhou, W, Christenson, E.T, Lowry, A.J, Faraldo-Gomez, J.D, Bonifacino, J.S, Jiang, J, Banerjee, A.
登録日2020-04-29
公開日2020-07-08
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Structure of Human ATG9A, the Only Transmembrane Protein of the Core Autophagy Machinery.
Cell Rep, 31, 2020
5HM9
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BU of 5hm9 by Molmil
Crystal structure of MamO protease domain from Magnetospirillum magneticum (apo form)
分子名称: MamO protease domain, poly(UNK)
著者Hershey, D.M, Ren, X, Hurley, J.H, Komeili, A.
登録日2016-01-15
公開日2016-03-23
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献MamO Is a Repurposed Serine Protease that Promotes Magnetite Biomineralization through Direct Transition Metal Binding in Magnetotactic Bacteria.
Plos Biol., 14, 2016
6NNQ
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BU of 6nnq by Molmil
Non-covalent structure of SENP1 in complex with SUMO2
分子名称: Sentrin-specific protease 1, Small ubiquitin-related modifier 3
著者Ambaye, N.D.
登録日2019-01-15
公開日2019-05-08
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.621 Å)
主引用文献Noncovalent structure of SENP1 in complex with SUMO2.
Acta Crystallogr.,Sect.F, 75, 2019
9CMP
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BU of 9cmp by Molmil
Structure of human Argonaute2-guide-target complex in a fully paired, slicing-competent conformation
分子名称: MAGNESIUM ION, Protein argonaute-2, RNA (5'-R(*CP*AP*AP*CP*AP*AP*AP*AP*UP*CP*AP*CP*UP*AP*GP*UP*CP*UP*UP*CP*CP*A)-3'), ...
著者Mohamed, A.A, Wang, P.Y, Bartel, D.P, Vos, S.M.
登録日2024-07-15
公開日2024-12-11
最終更新日2025-02-26
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献The structural basis for RNA slicing by human Argonaute2.
Cell Rep, 44, 2025
6ZLY
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BU of 6zly by Molmil
Crystal structure of the complex between PPARgamma LBD and the ligand NV1362 (7a)
分子名称: (2~{S})-2-[(4-hexoxyphenyl)carbonylamino]-3-methyl-butanoic acid, Peroxisome proliferator-activated receptor gamma
著者Pochetti, G, Montanari, R, Capelli, D.
登録日2020-07-01
公開日2020-11-25
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献A Novel N-Substituted Valine Derivative with Unique Peroxisome Proliferator-Activated Receptor gamma Binding Properties and Biological Activities.
J.Med.Chem., 63, 2020
1E10
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BU of 1e10 by Molmil
[2Fe-2S]-Ferredoxin from Halobacterium salinarum
分子名称: ACETYL GROUP, FE2/S2 (INORGANIC) CLUSTER, FERREDOXIN
著者Marg, B.-L, Schweimer, K, Oesterhelt, D, Roesch, P, Sticht, H.
登録日2000-04-12
公開日2001-04-09
最終更新日2025-04-09
実験手法SOLUTION NMR
主引用文献A Two-Alpha-Helix Extra Domain Mediates the Halophilic Character of a Plant-Type Ferredoxin from Halophilic Archaea.
Biochemistry, 44, 2005
8BSC
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BU of 8bsc by Molmil
CryoEM structure of the RAD51 nucleoprotein filament in the presence of ADP and Ca2+
分子名称: ADENOSINE-5'-DIPHOSPHATE, CALCIUM ION, DNA repair protein RAD51 homolog 1
著者Appleby, R, Bollschweiler, D, Pellegrini, L.
登録日2022-11-24
公開日2023-05-03
最終更新日2024-07-24
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献A metal ion-dependent mechanism of RAD51 nucleoprotein filament disassembly.
Iscience, 26, 2023
9CJC
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BU of 9cjc by Molmil
CryoEM structure of nitrogenase MoFe-protein 20 minute time point under alkaline turnover
分子名称: 3-HYDROXY-3-CARBOXY-ADIPIC ACID, FE (III) ION, FE(8)-S(7) CLUSTER, ...
著者Warmack, R.A, Rees, D.C.
登録日2024-07-05
公開日2024-12-18
実験手法ELECTRON MICROSCOPY (2.04 Å)
主引用文献Structural evolution of nitrogenase states under alkaline turnover.
Nat Commun, 15, 2024
6NSK
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BU of 6nsk by Molmil
CryoEM structure of Helicobacter pylori urea channel in open state.
分子名称: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHATE, Acid-activated urea channel
著者Cui, Y.X, Zhou, K, Strugatsky, D, Wen, Y, Sachs, G, Munson, K, Zhou, Z.H.
登録日2019-01-24
公開日2019-04-03
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献pH-dependent gating mechanism of theHelicobacter pyloriurea channel revealed by cryo-EM.
Sci Adv, 5, 2019
6WI5
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BU of 6wi5 by Molmil
De novo designed protein Foldit4
分子名称: De novo designed protein Foldit4
著者Bera, A.K, Koepnick, B, Boykov, A, Baker, D.
登録日2020-04-08
公開日2020-04-22
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.83 Å)
主引用文献De novo design of protein logic gates.
Science, 368, 2020
4RSD
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BU of 4rsd by Molmil
STRUCTURE OF THE D121A VARIANT OF RIBONUCLEASE A
分子名称: ACETATE ION, CHLORIDE ION, RIBONUCLEASE A
著者Schultz, L.W, Quirk, D.J, Raines, R.T.
登録日1998-02-05
公開日1998-07-15
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献His...Asp catalytic dyad of ribonuclease A: structure and function of the wild-type, D121N, and D121A enzymes.
Biochemistry, 37, 1998
7MYV
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BU of 7myv by Molmil
Plasmodium falciparum HAD5/PMM
分子名称: MAGNESIUM ION, Phosphomannomutase
著者Frasse, P.M, Odom John, A.R, Goldberg, D.E.
登録日2021-05-21
公開日2022-03-30
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3.51 Å)
主引用文献Enzymatic and structural characterization of HAD5, an essential phosphomannomutase of malaria-causing parasites.
J.Biol.Chem., 298, 2022
7N05
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BU of 7n05 by Molmil
Crystal structure of the F240 antibody fragment bound to the HIV-1 gp41 immunodominant region
分子名称: ACETATE ION, Fab F240 heavy chain, Fab F240 light chain, ...
著者Cook, J.D, Lee, J.E.
登録日2021-05-25
公開日2022-03-30
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Conformational plasticity of the HIV-1 gp41 immunodominant region is recognized by multiple non-neutralizing antibodies.
Commun Biol, 5, 2022
5R5U
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BU of 5r5u by Molmil
PanDDA analysis group deposition -- Crystal Structure of FIBRINOGEN-LIKE GLOBE DOMAIN OF HUMAN TENASCIN-C in complex with Z1545312521
分子名称: (2S)-N-(3-chloro-2-methylphenyl)oxolane-2-carboxamide, Tenascin C (Hexabrachion), isoform CRA_a
著者Coker, J.A, Bezerra, G.A, von Delft, F, Arrowsmith, C.H, Bountra, C, Edwards, A.M, Yue, W.W, Marsden, B.D.
登録日2020-02-28
公開日2020-10-28
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (1.52 Å)
主引用文献PanDDA analysis group deposition
To Be Published
8C70
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BU of 8c70 by Molmil
Pyrrolidine fragment 1 bound to endothiapepsin
分子名称: (3~{R},4~{R})-4-[4-[(5-bromanylpyridin-3-yl)oxymethyl]-1,2,3-triazol-1-yl]pyrrolidin-3-ol, Endothiapepsin
著者Wiese, J.N, Buehrmann, M, Mueller, M.P, Rauh, D.
登録日2023-01-12
公開日2023-05-24
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Fragtory: Pharmacophore-Focused Design, Synthesis, and Evaluation of an sp 3 -Enriched Fragment Library.
J.Med.Chem., 66, 2023
1EF4
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BU of 1ef4 by Molmil
SOLUTION STRUCTURE OF THE ESSENTIAL RNA POLYMERASE SUBUNIT RPB10 FROM METHANOBACTERIUM THERMOAUTOTROPHICUM
分子名称: DNA-DIRECTED RNA POLYMERASE, ZINC ION
著者Mackereth, C.D, Arrowsmith, C.H, Edwards, A.M, Mcintosh, L.P, Northeast Structural Genomics Consortium (NESG)
登録日2000-02-07
公開日2000-06-14
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Zinc-bundle structure of the essential RNA polymerase subunit RPB10 from Methanobacterium thermoautotrophicum.
Proc.Natl.Acad.Sci.USA, 97, 2000

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