PDB Search results for query - Protein Data Bank Japan

PDB: 558 results

Crystal structure of elongation domain of Phomopsis amygdali fusicoccadiene synthase complexed with cobalt ions and pamidronate
Descriptor:	COBALT (II) ION, Fusicoccadiene synthase, PAMIDRONATE
Authors:	Chen, M, Christianson, D.W.
Deposit date:	2015-11-14
Release date:	2016-01-20
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (2.55 Å)
Cite:	Structure and Function of Fusicoccadiene Synthase, a Hexameric Bifunctional Diterpene Synthase. Acs Chem.Biol., 11, 2016

5EEK

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with trichostatin A
Descriptor:	1,2-ETHANEDIOL, AMMONIUM ION, CHLORIDE ION, ...
Authors:	Hai, Y, Christianson, D.W.
Deposit date:	2015-10-23
Release date:	2016-07-27
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (1.59 Å)
Cite:	Histone deacetylase 6 structure and molecular basis of catalysis and inhibition. Nat.Chem.Biol., 12, 2016

5EEN

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with belinostat
Descriptor:	Belinostat, CHLORIDE ION, Hdac6 protein, ...
Authors:	Hai, Y, Christianson, D.W.
Deposit date:	2015-10-23
Release date:	2016-07-27
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (1.861 Å)
Cite:	Histone deacetylase 6 structure and molecular basis of catalysis and inhibition. Nat.Chem.Biol., 12, 2016

5EEF

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 1 in complex with trichostatin A
Descriptor:	1,2-ETHANEDIOL, AMMONIUM ION, HDAC6, ...
Authors:	Hai, Y, Christianson, D.W.
Deposit date:	2015-10-22
Release date:	2016-07-27
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (2.151 Å)
Cite:	Histone deacetylase 6 structure and molecular basis of catalysis and inhibition. Nat.Chem.Biol., 12, 2016

5EFK

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 (Y745F mutant) in complex with alpha tubulin K40 tripeptide substrate
Descriptor:	1,2-ETHANEDIOL, 7-AMINO-4-METHYL-CHROMEN-2-ONE, DI(HYDROXYETHYL)ETHER, ...
Authors:	Hai, Y, Christianson, D.W.
Deposit date:	2015-10-23
Release date:	2016-07-27
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.82 Å)
Cite:	Histone deacetylase 6 structure and molecular basis of catalysis and inhibition. Nat.Chem.Biol., 12, 2016

5EFH

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with trifluoroketone transition state analogue
Descriptor:	1,2-ETHANEDIOL, 7-[(3-aminopropyl)amino]-1,1,1-trifluoroheptane-2,2-diol, BROMIDE ION, ...
Authors:	Hai, Y, Christianson, D.W.
Deposit date:	2015-10-23
Release date:	2016-07-27
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (2.162 Å)
Cite:	Histone deacetylase 6 structure and molecular basis of catalysis and inhibition. Nat.Chem.Biol., 12, 2016

5EDU

Crystal structure of human histone deacetylase 6 catalytic domain 2 in complex with trichostatin A
Descriptor:	Maltose-binding periplasmic protein, Histone deacetylase 6 chimera, POTASSIUM ION, ...
Authors:	Hai, Y, Christianson, D.W.
Deposit date:	2015-10-22
Release date:	2016-07-27
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (2.79 Å)
Cite:	Histone deacetylase 6 structure and molecular basis of catalysis and inhibition. Nat.Chem.Biol., 12, 2016

5EF8

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with panobinostat
Descriptor:	1,2-ETHANEDIOL, GLYCEROL, Hdac6 protein, ...
Authors:	Hai, Y, Christianson, D.W.
Deposit date:	2015-10-23
Release date:	2016-07-27
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (2.6 Å)
Cite:	Histone deacetylase 6 structure and molecular basis of catalysis and inhibition. Nat.Chem.Biol., 12, 2016

5EEM

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2
Descriptor:	FORMIC ACID, Hdac6 protein, POTASSIUM ION, ...
Authors:	Hai, Y, Christianson, D.W.
Deposit date:	2015-10-23
Release date:	2016-07-27
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Histone deacetylase 6 structure and molecular basis of catalysis and inhibition. Nat.Chem.Biol., 12, 2016

5EFJ

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with HC toxin
Descriptor:	1,2-ETHANEDIOL, GLYCEROL, HC toxin, ...
Authors:	Hai, Y, Christianson, D.W.
Deposit date:	2015-10-23
Release date:	2016-07-27
Last modified:	2024-10-16
Method:	X-RAY DIFFRACTION (1.73 Å)
Cite:	Histone deacetylase 6 structure and molecular basis of catalysis and inhibition. Nat.Chem.Biol., 12, 2016

5ERN

Crystal structure of elongation domain of Phomopsis amygdali fusicoccadiene synthase
Descriptor:	Fusicoccadiene synthase
Authors:	Chen, M, Christianson, D.W.
Deposit date:	2015-11-14
Release date:	2016-01-20
Last modified:	2024-03-06
Method:	X-RAY DIFFRACTION (2.434 Å)
Cite:	Structure and Function of Fusicoccadiene Synthase, a Hexameric Bifunctional Diterpene Synthase. Acs Chem.Biol., 11, 2016

5ER8

Crystal structure of cyclization domain of Phomopsis amygdali fusicoccadiene synthase complexed with manganese ions and neridronate
Descriptor:	(6-azanyl-1-oxidanyl-1-phosphono-hexyl)phosphonic acid, CHLORIDE ION, Fusicoccadiene synthase, ...
Authors:	Chen, M, Christianson, D.W.
Deposit date:	2015-11-13
Release date:	2016-01-20
Last modified:	2016-04-27
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	Structure and Function of Fusicoccadiene Synthase, a Hexameric Bifunctional Diterpene Synthase. Acs Chem.Biol., 11, 2016

5EFB

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 in complex with oxamflatin
Descriptor:	Hdac6 protein, Oxamflatin, POTASSIUM ION, ...
Authors:	Hai, Y, Christianson, D.W.
Deposit date:	2015-10-23
Release date:	2016-07-27
Last modified:	2023-09-27
Method:	X-RAY DIFFRACTION (2.543 Å)
Cite:	Histone deacetylase 6 structure and molecular basis of catalysis and inhibition. Nat.Chem.Biol., 12, 2016

5ERM

Crystal structure of cyclization domain of Phomopsis amygdali fusicoccadiene synthase complexed with magnesium ions and pamidronate
Descriptor:	CHLORIDE ION, Fusicoccadiene synthase, MAGNESIUM ION, ...
Authors:	Chen, M, Christianson, D.W.
Deposit date:	2015-11-14
Release date:	2016-01-20
Last modified:	2024-03-06
Method:	X-RAY DIFFRACTION (2.303 Å)
Cite:	Structure and Function of Fusicoccadiene Synthase, a Hexameric Bifunctional Diterpene Synthase. Acs Chem.Biol., 11, 2016

2Q9Z

Trichodiene synthase: Complex with inorganic pyrophosphate resulting from the reaction with 2-fluorofarnesyl diphosphate
Descriptor:	1,2-ETHANEDIOL, MAGNESIUM ION, PYROPHOSPHATE 2-, ...
Authors:	Vedula, L.S, Zhao, Y, Coates, R.M, Koyama, T, Cane, D.E, Christianson, D.W.
Deposit date:	2007-06-14
Release date:	2007-10-30
Last modified:	2023-08-30
Method:	X-RAY DIFFRACTION (2.95 Å)
Cite:	Exploring biosynthetic diversity with trichodiene synthase. Arch.Biochem.Biophys., 466, 2007

2RLA

ALTERING THE BINUCLEAR MANGANESE CLUSTER OF ARGINASE DIMINISHES THERMOSTABILITY AND CATALYTIC FUNCTION
Descriptor:	ARGINASE, MANGANESE (II) ION
Authors:	Scolnick, L.R, Kanyo, Z.F, Christianson, D.W.
Deposit date:	1997-05-07
Release date:	1998-05-13
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (3 Å)
Cite:	Altering the binuclear manganese cluster of arginase diminishes thermostability and catalytic function. Biochemistry, 36, 1997

1P8P

Structural and Functional Importance of First-Shell Metal Ligands in the Binuclear Manganese Cluster of Arginase I.
Descriptor:	Arginase 1, MANGANESE (II) ION
Authors:	Cama, E, Emig, F.A, Ash, D.E, Christianson, D.W.
Deposit date:	2003-05-07
Release date:	2003-06-17
Last modified:	2023-08-16
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	Structural and functional importance of first-shell metal ligands in the binuclear manganese cluster of arginase I Biochemistry, 42, 2003

8SZU

Structure of Kdac1-Citarinostat complex from Acinetobacter baumannii
Descriptor:	Citarinostat, Histone deacetylase domain-containing protein, POTASSIUM ION, ...
Authors:	Watson, P.R, Christianson, D.W.
Deposit date:	2023-05-30
Release date:	2023-09-06
Last modified:	2023-11-08
Method:	X-RAY DIFFRACTION (1.75 Å)
Cite:	Structure and Function of Kdac1, a Class II Deacetylase from the Multidrug-Resistant Pathogen Acinetobacter baumannii . Biochemistry, 62, 2023

8SU1

F96H epi-Isozizaene Synthase: complex with 3 Mg2+ and pamidronate
Descriptor:	Epi-isozizaene synthase, MAGNESIUM ION, PAMIDRONATE, ...
Authors:	Eaton, S.A, Christianson, D.W.
Deposit date:	2023-05-11
Release date:	2023-07-26
Last modified:	2023-08-16
Method:	X-RAY DIFFRACTION (1.37 Å)
Cite:	Reprogramming the Cyclization Cascade of epi -Isozizaene Synthase to Generate Alternative Terpene Products. Biochemistry, 62, 2023

8SU3

F95S epi-Isozizaene Synthase: complex with 3 Mg2+, inorganic pyrophosphate, and benzyl triethyl ammonium cation
Descriptor:	Epi-isozizaene synthase, GLYCEROL, MAGNESIUM ION, ...
Authors:	Eaton, S.A, Christianson, D.W.
Deposit date:	2023-05-11
Release date:	2023-07-26
Last modified:	2023-08-16
Method:	X-RAY DIFFRACTION (1.29 Å)
Cite:	Reprogramming the Cyclization Cascade of epi -Isozizaene Synthase to Generate Alternative Terpene Products. Biochemistry, 62, 2023

8SZT

Structure of Kdac1 from Acinetobacter baumannii
Descriptor:	CHLORIDE ION, Histone deacetylase domain-containing protein, POTASSIUM ION, ...
Authors:	Watson, P.R, Christianson, D.W.
Deposit date:	2023-05-30
Release date:	2023-09-06
Last modified:	2023-10-04
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	Structure and Function of Kdac1, a Class II Deacetylase from the Multidrug-Resistant Pathogen Acinetobacter baumannii . Biochemistry, 62, 2023

8TQ0

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with (R)-Lipoic Acid
Descriptor:	DIHYDROLIPOIC ACID, Hdac6 protein, POTASSIUM ION, ...
Authors:	Watson, P.R, Christianson, D.W.
Deposit date:	2023-08-06
Release date:	2023-09-20
Last modified:	2024-04-03
Method:	X-RAY DIFFRACTION (2.4 Å)
Cite:	Crystal structure of histone deacetylase 6 complexed with (R)-lipoic acid, an essential cofactor in central carbon metabolism. J.Biol.Chem., 299, 2023

8SU4

F198S epi-Isozizaene Synthase: complex with 3 Mg2+, inorganic pyrophosphate, and benzyl triethyl ammonium cation
Descriptor:	Epi-isozizaene synthase, GLYCEROL, MAGNESIUM ION, ...
Authors:	Eaton, S.A, Christianson, D.W.
Deposit date:	2023-05-11
Release date:	2023-07-26
Last modified:	2023-08-16
Method:	X-RAY DIFFRACTION (1.43 Å)
Cite:	Reprogramming the Cyclization Cascade of epi -Isozizaene Synthase to Generate Alternative Terpene Products. Biochemistry, 62, 2023

8SU0

Unliganded F96H epi-Isozizaene Synthase
Descriptor:	Epi-isozizaene synthase, SULFATE ION
Authors:	Eaton, S.A, Christianson, D.W.
Deposit date:	2023-05-11
Release date:	2023-07-26
Last modified:	2023-08-16
Method:	X-RAY DIFFRACTION (1.99 Å)
Cite:	Reprogramming the Cyclization Cascade of epi -Isozizaene Synthase to Generate Alternative Terpene Products. Biochemistry, 62, 2023

8SU2

F96H epi-Isozizaene Synthase: complex with 3 Mg2+ and risedronate
Descriptor:	1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDENE BIS-PHOSPHONIC ACID, Epi-isozizaene synthase, GLYCEROL, ...
Authors:	Eaton, S.A, Christianson, D.W.
Deposit date:	2023-05-11
Release date:	2023-07-26
Last modified:	2023-08-16
Method:	X-RAY DIFFRACTION (1.33 Å)
Cite:	Reprogramming the Cyclization Cascade of epi -Isozizaene Synthase to Generate Alternative Terpene Products. Biochemistry, 62, 2023

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Total results:	558
Displayed results:	25
Sorted by:	Hit score (from highest)
Deposition authors:	"Christianson, D.W."