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PDB: 27 results
455D
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BU of 455d by Molmil
A6/A18 INTER-STRAND DITHIOBIS(PROPANE)-CROSSLINKED DODECAMER (CGCGAATTCGCG)2
Descriptor: DITHIOBIS-(PROPANE), DNA (5'-D(*CP*GP*CP*GP*AP*(SSP)AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION
Authors:Chiu, T.K, Kaczor-Grzeskowiak, M, Dickerson, R.E.
Deposit date:1999-03-04
Release date:1999-10-08
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Absence of minor groove monovalent cations in the crosslinked dodecamer C-G-C-G-A-A-T-T-C-G-C-G.
J.Mol.Biol., 292, 1999
1ENE
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BU of 1ene by Molmil
1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM.
Descriptor: CALCIUM ION, DNA (5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3'), ETHANOL
Authors:Chiu, T.K, Dickerson, R.E.
Deposit date:2000-03-21
Release date:2000-09-25
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (0.985 Å)
Cite:1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium.
J.Mol.Biol., 301, 2000
1EN3
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BU of 1en3 by Molmil
1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM
Descriptor: DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3'), MAGNESIUM ION
Authors:Chiu, T.K, Dickerson, R.E.
Deposit date:2000-03-20
Release date:2000-09-25
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (0.985 Å)
Cite:1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium.
J.Mol.Biol., 301, 2000
1EN8
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BU of 1en8 by Molmil
1 A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM
Descriptor: CALCIUM ION, DNA (5'-D(*CP*CP*AP*AP*CP*GP*TP*TP*GP*G)-3'), ETHANOL
Authors:Chiu, T.K, Dickerson, R.E.
Deposit date:2000-03-20
Release date:2000-09-25
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (0.985 Å)
Cite:1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium.
J.Mol.Biol., 301, 2000
3MUO
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BU of 3muo by Molmil
APPEP_PEPCLOSE+PP closed state
Descriptor: GLYCEROL, N-BENZYLOXYCARBONYL-L-PROLYL-L-PROLINAL, Prolyl endopeptidase, ...
Authors:Chiu, T.K.
Deposit date:2010-05-03
Release date:2011-06-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Route of Substrate Entry in Prolyl Endopeptidase
TO BE PUBLISHED
1EN9
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BU of 1en9 by Molmil
1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM.
Descriptor: DNA (5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3'), MAGNESIUM ION
Authors:Chiu, T.K, Dickerson, R.E.
Deposit date:2000-03-20
Release date:2000-09-25
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (0.985 Å)
Cite:1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium.
J.Mol.Biol., 301, 2000
3MUN
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BU of 3mun by Molmil
APPEP_PEPCLOSE closed state
Descriptor: GLYCEROL, Prolyl endopeptidase, SULFATE ION, ...
Authors:Chiu, T.K.
Deposit date:2010-05-03
Release date:2011-05-18
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Route of Substrate Entry in Prolyl Endopeptidase
TO BE PUBLISHED
1IJW
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BU of 1ijw by Molmil
Testing the Water-Mediated Hin Recombinase DNA Recognition by Systematic Mutations.
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-D(*AP*TP*(CBR)P*TP*TP*AP*TP*CP*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*GP*TP*TP*TP*TP*TP*GP*AP*TP*AP*AP*GP*A)-3', ...
Authors:Chiu, T.K, Sohn, C, Johnson, R.C, Dickerson, R.E.
Deposit date:2001-04-30
Release date:2002-02-22
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Testing water-mediated DNA recognition by the Hin recombinase.
EMBO J., 21, 2002
1JKP
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BU of 1jkp by Molmil
Testing the Water-Mediated HIN Recombinase DNA Recognition by Systematic Mutations
Descriptor: 5'-D(*AP*TP*CP*TP*TP*CP*TP*CP*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*GP*TP*TP*TP*TP*TP*GP*AP*GP*AP*AP*GP*A)-3', DNA-INVERTASE HIN
Authors:Chiu, T.K, Sohn, C, Johnson, R.C, Dickerson, R.E.
Deposit date:2001-07-13
Release date:2002-02-22
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Testing water-mediated DNA recognition by the Hin recombinase.
EMBO J., 21, 2002
1JKQ
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BU of 1jkq by Molmil
Testing the Water-Mediated HIN Recombinase DNA Recognition by Systematic Mutations
Descriptor: 5'-D(*AP*TP*CP*TP*TP*AP*TP*AP*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*GP*TP*TP*TP*TP*TP*TP*AP*TP*AP*AP*GP*A)-3', DNA-INVERTASE HIN
Authors:Chiu, T.K, Sohn, C, Johnson, R.C, Dickerson, R.E.
Deposit date:2001-07-13
Release date:2002-02-22
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:Testing water-mediated DNA recognition by the Hin recombinase.
EMBO J., 21, 2002
1JJ8
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BU of 1jj8 by Molmil
Testing the Water-Mediated HIN Recombinase DNA Recognition by Systematic Mutations
Descriptor: 5'-D(*AP*TP*CP*TP*TP*AP*TP*CP*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*GP*(5IT)P*TP*TP*TP*TP*GP*AP*TP*AP*AP*GP*A)-3', DNA-INVERTASE HIN
Authors:Chiu, T.K, Sohn, C, Johnson, R.C, Dickerson, R.E.
Deposit date:2001-07-03
Release date:2002-02-22
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Testing water-mediated DNA recognition by the Hin recombinase.
EMBO J., 21, 2002
1JJ6
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BU of 1jj6 by Molmil
Testing the Water-Mediated Hin Recombinase DNA Recognition by Systematic Mutations.
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-D(*AP*TP*CP*TP*TP*AP*TP*CP*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*GP*TP*(5IT)P*TP*TP*TP*GP*AP*TP*AP*AP*GP*A)-3', ...
Authors:Chiu, T.K, Sohn, C, Johnson, R.C, Dickerson, R.E.
Deposit date:2001-07-03
Release date:2002-02-22
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Testing water-mediated DNA recognition by the Hin recombinase.
EMBO J., 21, 2002
1JKO
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BU of 1jko by Molmil
Testing the Water-Mediated HIN Recombinase DNA Recognition by Systematic Mutations
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-D(*AP*TP*CP*TP*TP*AP*CP*CP*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*GP*TP*TP*TP*TP*TP*GP*GP*TP*AP*AP*GP*A)-3', ...
Authors:Chiu, T.K, Sohn, C, Johnson, R.C, Dickerson, R.E.
Deposit date:2001-07-12
Release date:2002-02-22
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Testing water-mediated DNA recognition by the Hin recombinase.
EMBO J., 21, 2002
1JKR
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BU of 1jkr by Molmil
Testing the Water-Mediated HIN Recombinase DNA Recognition by Systematic Mutations
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-D(*AP*TP*CP*TP*TP*GP*TP*CP*AP*AP*AP*AP*AP*C)-3', 5'-D(*TP*GP*TP*TP*TP*TP*TP*GP*AP*CP*AP*AP*GP*A)-3', ...
Authors:Chiu, T.K, Sohn, C, Johnson, R.C, Dickerson, R.E.
Deposit date:2001-07-13
Release date:2002-02-22
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Testing water-mediated DNA recognition by the Hin recombinase.
EMBO J., 21, 2002
2F4K
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BU of 2f4k by Molmil
Chicken villin subdomain HP-35, K65(NLE), N68H, K70(NLE), PH9
Descriptor: Villin-1
Authors:Chiu, T.K, Davies, D.R, Kubelka, J, Hofrichter, J, Eaton, W.A.
Deposit date:2005-11-23
Release date:2006-04-11
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Sub-microsecond Protein Folding.
J.Mol.Biol., 359, 2006
1WY4
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BU of 1wy4 by Molmil
Chicken villin subdomain HP-35, K65(NLE), N68H, pH5.1
Descriptor: IODIDE ION, SODIUM ION, Villin
Authors:Chiu, T.K, Kubelka, J, Herbst-Irmer, R, Eaton, W.A, Hofrichter, J, Davies, D.R.
Deposit date:2005-02-04
Release date:2005-05-03
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:High-resolution x-ray crystal structures of the villin headpiece subdomain, an ultrafast folding protein.
Proc.Natl.Acad.Sci.Usa, 102, 2005
1WY3
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BU of 1wy3 by Molmil
Chicken villin subdomain HP-35, K65(NLE), N68H, pH7.0
Descriptor: Villin
Authors:Chiu, T.K, Kubelka, J, Herbst-Irmer, R, Eaton, W.A, Hofrichter, J, Davies, D.R.
Deposit date:2005-02-04
Release date:2005-05-03
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (0.95 Å)
Cite:High-resolution x-ray crystal structures of the villin headpiece subdomain, an ultrafast folding protein.
Proc.Natl.Acad.Sci.Usa, 102, 2005
1YRI
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BU of 1yri by Molmil
Chicken villin subdomain HP-35, N68H, pH6.4
Descriptor: ACETATE ION, IODIDE ION, Villin
Authors:Chiu, T.K, Kubelka, J, Herbst-Irmer, R, Eaton, W.A, Hofrichter, J, Davies, D.R.
Deposit date:2005-02-03
Release date:2005-05-03
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1 Å)
Cite:High-resolution x-ray crystal structures of the villin headpiece subdomain, an ultrafast folding protein.
Proc.Natl.Acad.Sci.Usa, 102, 2005
1YRF
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BU of 1yrf by Molmil
Chicken villin subdomain HP-35, N68H, pH6.7
Descriptor: ACETATE ION, SULFATE ION, Villin
Authors:Chiu, T.K, Kubelka, J, Herbst-Irmer, R, Eaton, W.A, Hofrichter, J, Davies, D.R.
Deposit date:2005-02-03
Release date:2005-05-03
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.07 Å)
Cite:High-resolution x-ray crystal structures of the villin headpiece subdomain, an ultrafast folding protein.
Proc.Natl.Acad.Sci.Usa, 102, 2005
3IUR
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BU of 3iur by Molmil
apPEP_D266Nx+H2H3 opened state
Descriptor: GLYCEROL, H2H3 helices from villin headpiece subdomain HP35, POLYETHYLENE GLYCOL (N=34), ...
Authors:Chiu, T.K.
Deposit date:2009-08-31
Release date:2010-05-05
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Induced-fit mechanism for prolyl endopeptidase
J.Biol.Chem., 285, 2010
3IVM
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BU of 3ivm by Molmil
apPEP_WT+PP closed state
Descriptor: N-BENZYLOXYCARBONYL-L-PROLYL-L-PROLINAL, prolyl endopeptidase
Authors:Chiu, T.K.
Deposit date:2009-09-01
Release date:2010-05-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Induced-fit mechanism for prolyl endopeptidase
J.Biol.Chem., 285, 2010
3IUQ
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BU of 3iuq by Molmil
apPEP_D622N+PP closed state
Descriptor: GLYCEROL, N-BENZYLOXYCARBONYL-L-PROLYL-L-PROLINAL, Prolyl Endopeptidase
Authors:Chiu, T.K.
Deposit date:2009-08-31
Release date:2010-05-05
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Induced-fit mechanism for prolyl endopeptidase
J.Biol.Chem., 285, 2010
3IUL
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BU of 3iul by Molmil
apPEP_WT1 opened state
Descriptor: GLYCEROL, Prolyl endopeptidase
Authors:Chiu, T.K.
Deposit date:2009-08-31
Release date:2010-05-05
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Induced-fit mechanism for prolyl endopeptidase
J.Biol.Chem., 285, 2010
3IUJ
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BU of 3iuj by Molmil
apPEP_WT2 opened state
Descriptor: Prolyl endopeptidase
Authors:Chiu, T.K.
Deposit date:2009-08-31
Release date:2010-05-05
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Induced-fit mechanism for prolyl endopeptidase
J.Biol.Chem., 285, 2010
3IUN
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BU of 3iun by Molmil
apPEP_D622N opened state
Descriptor: GLYCEROL, Prolyl Endopeptidase
Authors:Chiu, T.K.
Deposit date:2009-08-31
Release date:2010-05-05
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Induced-fit mechanism for prolyl endopeptidase
J.Biol.Chem., 285, 2010

 

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