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PDB: 34 件
1PGY
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BU of 1pgy by Molmil
Solution structure of the UBA domain in Saccharomyces cerevisiae protein, Swa2p
分子名称: Swa2p
著者Chim, N, Gall, W.E, Xiao, J, Harris, M.P, Graham, T.R, Krezel, A.M.
登録日2003-05-28
公開日2004-03-23
最終更新日2022-02-23
実験手法SOLUTION NMR
主引用文献Solution structure of the ubiquitin-binding domain in Swa2p from Saccharomyces cerevisiae.
PROTEINS: STRUCT.,FUNCT.,GENET., 54, 2004
6DSV
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BU of 6dsv by Molmil
Bst DNA polymerase I post-chemistry (n+2) structure
分子名称: DNA (5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*TP*A)-3'), DNA (5'-D(P*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3'), DNA polymerase I, ...
著者Chim, N, Jackson, L.N, Chaput, J.C.
登録日2018-06-14
公開日2018-10-31
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Crystal structures of DNA polymerase I capture novel intermediates in the DNA synthesis pathway.
Elife, 7, 2018
6DSW
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BU of 6dsw by Molmil
Bst DNA polymerase I pre-chemistry (n) structure
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA (5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*G)-3'), DNA (5'-D(P*AP*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3'), ...
著者Chim, N, Jackson, L.N, Chaput, J.C.
登録日2018-06-14
公開日2018-10-31
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.589 Å)
主引用文献Crystal structures of DNA polymerase I capture novel intermediates in the DNA synthesis pathway.
Elife, 7, 2018
6DSY
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BU of 6dsy by Molmil
Bst DNA polymerase I post-chemistry (n+1) structure
分子名称: DNA (5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*T)-3'), DNA (5'-D(P*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3'), DNA polymerase I, ...
著者Chim, N, Jackson, L.N, Chaput, J.C.
登録日2018-06-14
公開日2018-10-31
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Crystal structures of DNA polymerase I capture novel intermediates in the DNA synthesis pathway.
Elife, 7, 2018
6DSU
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BU of 6dsu by Molmil
Bst DNA polymerase I pre-insertion complex structure
分子名称: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]adenosine, DNA (5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*T)-3'), DNA (5'-D(P*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3'), ...
著者Chim, N, Jackson, L.N, Chaput, J.C.
登録日2018-06-14
公開日2018-10-31
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Crystal structures of DNA polymerase I capture novel intermediates in the DNA synthesis pathway.
Elife, 7, 2018
6DSX
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BU of 6dsx by Molmil
Bst DNA polymerase I post-chemistry (n+1 with dATP soak) structure
分子名称: DNA (5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*TP*A)-3'), DNA (5'-D(*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3'), DNA polymerase I, ...
著者Chim, N, Jackson, L.N, Chaput, J.C.
登録日2018-06-14
公開日2018-10-31
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Crystal structures of DNA polymerase I capture novel intermediates in the DNA synthesis pathway.
Elife, 7, 2018
3HX9
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BU of 3hx9 by Molmil
Structure of heme-degrader, MhuD (Rv3592), from Mycobacterium tuberculosis with two hemes bound in its active site
分子名称: CHLORIDE ION, PROTOPORPHYRIN IX CONTAINING FE, Protein Rv3592
著者Chim, N, Nguyen, T.Q, Iniguez, A, Goulding, C.W.
登録日2009-06-19
公開日2009-12-01
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Unusual Diheme Conformation of the Heme-Degrading Protein from Mycobacterium tuberculosis
J.Mol.Biol., 395, 2009
3IOS
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BU of 3ios by Molmil
Structure of MTB dsbF in its mixed oxidized and reduced forms
分子名称: Disulfide bond forming protein (DsbF)
著者Chim, N, Goulding, C.W.
登録日2009-08-14
公開日2010-01-05
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献An extracellular disulfide bond forming protein (DsbF) from Mycobacterium tuberculosis: structural, biochemical, and gene expression analysis.
J.Mol.Biol., 396, 2010
5VU5
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BU of 5vu5 by Molmil
TNA polymerase, apo
分子名称: DNA polymerase
著者Chim, N, Chaput, J.C.
登録日2017-05-18
公開日2017-12-06
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural basis for TNA synthesis by an engineered TNA polymerase.
Nat Commun, 8, 2017
5VU7
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BU of 5vu7 by Molmil
TNA polymerase, open ternary complex
分子名称: 5-(6-AMINO-9H-PURIN-9-YL)-4-HYDROXYTETRAHYDROFURAN-3-YL DIHYDROGEN PHOSPHATE, DNA polymerase, DNA template, ...
著者Chim, N, Chaput, J.C.
登録日2017-05-18
公開日2017-12-06
最終更新日2017-12-13
実験手法X-RAY DIFFRACTION (2.72 Å)
主引用文献Structural basis for TNA synthesis by an engineered TNA polymerase.
Nat Commun, 8, 2017
5VU9
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BU of 5vu9 by Molmil
TNA polymerase, translocated product
分子名称: DNA polymerase, DNA template, DNA/TNA hybrid primer
著者Chim, N, Chaput, J.C.
登録日2017-05-18
公開日2017-12-06
最終更新日2017-12-13
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Structural basis for TNA synthesis by an engineered TNA polymerase.
Nat Commun, 8, 2017
5VU8
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BU of 5vu8 by Molmil
TNA polymerase, closed ternary complex
分子名称: DNA polymerase, DNA template, DNA/TNA hybrid primer, ...
著者Chim, N, Chaput, J.C.
登録日2017-05-18
公開日2017-12-06
最終更新日2017-12-13
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structural basis for TNA synthesis by an engineered TNA polymerase.
Nat Commun, 8, 2017
5VU6
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BU of 5vu6 by Molmil
TNA polymerase binary complex with primer/template duplex
分子名称: DNA polymerase, DNA template, DNA/TNA hybrid primer
著者Chim, N, Chaput, J.C.
登録日2017-05-18
公開日2017-12-06
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Structural basis for TNA synthesis by an engineered TNA polymerase.
Nat Commun, 8, 2017
7K5U
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BU of 7k5u by Molmil
Bst DNA polymerase I time-resolved structure, 48 hr post dATP and dCTP addition
分子名称: DNA (5'-D(P*CP*GP*AP*TP*CP*AP*CP*GP*TP*AP*C)-3'), DNA (5'-D(P*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*C)-3'), DNA polymerase I, ...
著者Chim, N, Meza, R.A, Trinh, A.M, Chaput, J.C.
登録日2020-09-17
公開日2021-03-03
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Following replicative DNA synthesis by time-resolved X-ray crystallography.
Nat Commun, 12, 2021
7K5P
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BU of 7k5p by Molmil
Bst DNA polymerase I time-resolved structure, 4 min post dATP addition
分子名称: DNA (5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*T)-3'), DNA (5'-D(P*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3'), DNA polymerase I, ...
著者Chim, N, Meza, R.A, Trinh, A.M, Chaput, J.C.
登録日2020-09-17
公開日2021-03-03
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Following replicative DNA synthesis by time-resolved X-ray crystallography.
Nat Commun, 12, 2021
7K5S
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BU of 7k5s by Molmil
Bst DNA polymerase I time-resolved structure, 4 hr post dATP and dCTP addition
分子名称: DNA (5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*TP*A)-3'), DNA (5'-D(P*AP*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*C)-3'), DNA polymerase I, ...
著者Chim, N, Meza, R.A, Trinh, A.M, Chaput, J.C.
登録日2020-09-17
公開日2021-03-03
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.67 Å)
主引用文献Following replicative DNA synthesis by time-resolved X-ray crystallography.
Nat Commun, 12, 2021
7K5O
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BU of 7k5o by Molmil
Bst DNA polymerase I time-resolved structure, 1 min post dATP addition
分子名称: DNA (5'-D(*GP*CP*GP*AP*TP*CP*AP*CP*GP*T)-3'), DNA (5'-D(P*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3'), DNA polymerase I, ...
著者Chim, N, Meza, R.A, Trinh, A.M, Chaput, J.C.
登録日2020-09-17
公開日2021-03-03
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.16 Å)
主引用文献Following replicative DNA synthesis by time-resolved X-ray crystallography.
Nat Commun, 12, 2021
7K5R
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BU of 7k5r by Molmil
Bst DNA polymerase I time-resolved structure, 120 min post dATP addition
分子名称: DNA (5'-D(P*GP*CP*GP*AP*TP*CP*AP*CP*GP*TP*A)-3'), DNA (5'-D(P*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3'), DNA polymerase I, ...
著者Chim, N, Meza, R.A, Trinh, A.M, Chaput, J.C.
登録日2020-09-17
公開日2021-03-03
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Following replicative DNA synthesis by time-resolved X-ray crystallography.
Nat Commun, 12, 2021
7K5Q
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BU of 7k5q by Molmil
Bst DNA polymerase I time-resolved structure, 8 min post dATP addition
分子名称: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA (5'-D(P*G*CP*GP*AP*TP*CP*AP*CP*GP*T)-3'), DNA (5'-D(P*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*CP*A)-3'), ...
著者Chim, N, Meza, R.A, Trinh, A.M, Chaput, J.C.
登録日2020-09-17
公開日2021-03-03
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Following replicative DNA synthesis by time-resolved X-ray crystallography.
Nat Commun, 12, 2021
7K5T
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BU of 7k5t by Molmil
Bst DNA polymerase I time-resolved structure, 25.5 hr post dATP and dCTP addition
分子名称: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA (5'-D(P*CP*GP*AP*TP*CP*AP*CP*GP*TP*A)-3'), DNA (5'-D(P*CP*GP*TP*AP*CP*GP*TP*GP*AP*TP*CP*GP*C)-3'), ...
著者Chim, N, Meza, R.A, Trinh, A.M, Chaput, J.C.
登録日2020-09-17
公開日2021-03-03
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Following replicative DNA synthesis by time-resolved X-ray crystallography.
Nat Commun, 12, 2021
4Y0L
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BU of 4y0l by Molmil
Mycobacterial membrane protein MmpL11D2
分子名称: IODIDE ION, Putative membrane protein mmpL11, SULFATE ION
著者Torres, R, Chim, N, Goulding, C.W.
登録日2015-02-06
公開日2015-08-12
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The Structure and Interactions of Periplasmic Domains of Crucial MmpL Membrane Proteins from Mycobacterium tuberculosis.
Chem.Biol., 22, 2015
6MU4
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BU of 6mu4 by Molmil
Bst DNA polymerase I FANA/DNA binary complex
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA (5'-D(P*GP*CP*GP*AP*TP*CP*AP*CP*GP*T)-3'), DNA polymerase I, ...
著者Jackson, L.N, Chim, N, Chaput, J.C.
登録日2018-10-22
公開日2019-06-05
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.62 Å)
主引用文献Crystal structures of a natural DNA polymerase that functions as an XNA reverse transcriptase.
Nucleic Acids Res., 47, 2019
6MU5
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BU of 6mu5 by Molmil
Bst DNA polymerase I TNA/DNA binary complex
分子名称: DNA (5'-D(P*GP*CP*GP*AP*TP*CP*AP*CP*GP*T)-3'), DNA polymerase I, SULFATE ION, ...
著者Jackson, L.N, Chim, N, Chaput, J.C.
登録日2018-10-22
公開日2019-06-05
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.912 Å)
主引用文献Crystal structures of a natural DNA polymerase that functions as an XNA reverse transcriptase.
Nucleic Acids Res., 47, 2019
2QH3
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BU of 2qh3 by Molmil
Solution structure of the U64 H/ACA snoRNA 3' terminal hairpin loop
分子名称: Human U64 H/ACA snoRNA
著者Feigon, J, Theimer, C.A, Chim, N, Breece, K.E.
登録日2007-06-29
公開日2007-09-25
最終更新日2022-03-16
実験手法SOLUTION NMR
主引用文献Structural and functional characterization of human telomerase RNA processing and cajal body localization signals.
Mol.Cell, 27, 2007
2QH2
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BU of 2qh2 by Molmil
Solution structure of the CR7 terminal hairpin loop from human telomerase RNA
分子名称: Human telomerase RNA CR7 terminal hairpin loop
著者Feigon, J, Theimer, C.A, Chim, N, Breece, K.E.
登録日2007-06-29
公開日2007-09-25
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structural and functional characterization of human telomerase RNA processing and cajal body localization signals.
Mol.Cell, 27, 2007

 

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