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PDB: 2660 results

4LI7
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TANKYRASE-1 complexed with small molecule inhibitor 4-chloro-5-cyano-N-{2-[4-(4-fluorobenzoyl)piperidin-1-yl]ethyl}-2-methoxybenzamide
Descriptor: 4-chloro-5-cyano-N-{2-[4-(4-fluorobenzoyl)piperidin-1-yl]ethyl}-2-methoxybenzamide, SODIUM ION, SULFATE ION, ...
Authors:Kirby, C.A, Stams, T.
Deposit date:2013-07-02
Release date:2013-08-14
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Identification of NVP-TNKS656: The Use of Structure-Efficiency Relationships To Generate a Highly Potent, Selective, and Orally Active Tankyrase Inhibitor.
J.Med.Chem., 56, 2013
3UT9
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BU of 3ut9 by Molmil
Crystal Structure of Nucleosome Core Particle Assembled with a Palindromic Widom '601' Derivative (NCP-601L)
Descriptor: 145-mer DNA, CHLORIDE ION, Histone H2A, ...
Authors:Chua, E.Y.D, Vasudevan, D, Davey, G.E, Wu, B, Davey, C.A.
Deposit date:2011-11-25
Release date:2012-04-11
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The mechanics behind DNA sequence-dependent properties of the nucleosome
Nucleic Acids Res., 40, 2012
1ND4
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BU of 1nd4 by Molmil
Crystal structure of aminoglycoside-3'-phosphotransferase-IIa
Descriptor: ACETATE ION, Aminoglycoside 3'-phosphotransferase, KANAMYCIN A, ...
Authors:Nurizzo, D, Shewry, S.C, Baker, E.N, Smith, C.A.
Deposit date:2002-12-06
Release date:2003-09-16
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The crystal structure of aminoglycoside-3'-phosphotransferase-IIa, an enzyme responsible for antibiotic resistance
J.Mol.Biol., 327, 2003
2NXD
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BU of 2nxd by Molmil
Structure of HIV-1 protease D25N complexed with rt-rh analogue peptide GLY-ALA-ASP-ILE-PHE*TYR-LEU-ASP-GLY-ALA
Descriptor: Analogue of RT-RH pol protease substrate peptide, PROTEASE RETROPEPSIN
Authors:Prabu-Jeyabalan, M, Nalivaika, E, Schiffer, C.A.
Deposit date:2006-11-17
Release date:2007-09-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Computational design and experimental study of tighter binding peptides to an inactivated mutant of HIV-1 protease
Proteins, 70, 2007
4L80
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Crystal Structure of Chloroflexus aurantiacus malyl-CoA lyase in complex with magnesium, oxalate, and propionyl-CoA
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, HpcH/HpaI aldolase, MAGNESIUM ION, ...
Authors:Zarzycki, J, Kerfeld, C.A.
Deposit date:2013-06-15
Release date:2013-12-04
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.008 Å)
Cite:The crystal structures of the tri-functional Chloroflexus aurantiacus and bi-functional Rhodobacter sphaeroides malyl-CoA lyases and comparison with CitE-like superfamily enzymes and malate synthases.
Bmc Struct.Biol., 13, 2013
4LCJ
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BU of 4lcj by Molmil
CtBP2 in complex with substrate MTOB
Descriptor: 4-(METHYLSULFANYL)-2-OXOBUTANOIC ACID, C-terminal-binding protein 2, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Hilbert, B.J, Schiffer, C.A, Royer Jr, W.E.
Deposit date:2013-06-21
Release date:2014-03-19
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.86 Å)
Cite:Crystal structures of human CtBP in complex with substrate MTOB reveal active site features useful for inhibitor design.
Febs Lett., 588, 2014
3UTA
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BU of 3uta by Molmil
Crystal Structure of Nucleosome Core Particle Assembled with an Alpha-Satellite Sequence Containing Two TTAAA elements (NCP-TA2)
Descriptor: 145-mer DNA, CHLORIDE ION, Histone H2A, ...
Authors:Chua, E.Y.D, Vasudevan, D, Davey, G.E, Wu, B, Davey, C.A.
Deposit date:2011-11-25
Release date:2012-04-11
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:The mechanics behind DNA sequence-dependent properties of the nucleosome
Nucleic Acids Res., 40, 2012
4FFY
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BU of 4ffy by Molmil
Crystal structure of DENV1-E111 single chain variable fragment bound to DENV-1 DIII, strain 16007.
Descriptor: CHLORIDE ION, DENV1-E111 single chain variable fragment (heavy chain), DENV1-E111 single chain variable fragment (light chain), ...
Authors:Austin, S.K, Nelson, C.A, Fremont, D.H, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2012-06-01
Release date:2012-06-20
Last modified:2012-10-31
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural Basis of Differential Neutralization of DENV-1 Genotypes by an Antibody that Recognizes a Cryptic Epitope.
Plos Pathog., 8, 2012
2O6C
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BU of 2o6c by Molmil
Structure of selenomethionyl rTp34 from Treponema pallidum
Descriptor: 1,2-ETHANEDIOL, 34 kDa membrane antigen, CHLORIDE ION, ...
Authors:Machius, M, Brautigam, C.A, Deka, R.K, Tomchick, D.R, Lumpkins, S.B, Norgard, M.V.
Deposit date:2006-12-07
Release date:2006-12-26
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of the Tp34 (TP0971) lipoprotein of treponema pallidum: implications of its metal-bound state and affinity for human lactoferrin.
J.Biol.Chem., 282, 2007
3MGS
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BU of 3mgs by Molmil
Binding of Cesium ions to the Nucleosome Core particle
Descriptor: CESIUM ION, CHLORIDE ION, DNA (147-MER), ...
Authors:Mohideen, K, Muhammad, R, Davey, C.A.
Deposit date:2010-04-07
Release date:2010-06-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Perturbations in nucleosome structure from heavy metal association.
Nucleic Acids Res., 2010
3V4K
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BU of 3v4k by Molmil
First-In-Class Small Molecule Inhibitors of the Single-strand DNA Cytosine Deaminase APOBEC3G
Descriptor: CHLORIDE ION, DNA dC->dU-editing enzyme APOBEC-3G, MAGNESIUM ION, ...
Authors:Shandilya, S.M.D, Ali, A, Schiffer, C.A.
Deposit date:2011-12-15
Release date:2012-01-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:First-In-Class Small Molecule Inhibitors of the Single-Strand DNA Cytosine Deaminase APOBEC3G.
Acs Chem.Biol., 7, 2012
1PX2
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BU of 1px2 by Molmil
Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP (Form 1)
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, Synapsin I
Authors:Brautigam, C.A, Chelliah, Y, Deisenhofer, J.
Deposit date:2003-07-02
Release date:2004-03-23
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Tetramerization and ATP binding by a protein comprising the A, B, and C domains of rat synapsin I.
J.Biol.Chem., 279, 2004
6BNS
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BU of 6bns by Molmil
STRUCTURE OF HUMAN PREGNANE X RECEPTOR LIGAND BINDING DOMAIN BOUND TETHERED WITH SRC co-activator peptide and Compound 25a AKA BICYCLIC HEXAFLUOROISOPROPYL 2 ALCOHOL SULFONAMIDES
Descriptor: 2-[(2S)-4-[(4-fluorophenyl)sulfonyl]-7-(1,1,1,3,3,3-hexafluoro-2-hydroxypropan-2-yl)-3,4-dihydro-2H-1,4-benzothiazin-2-yl]-N-(2-hydroxy-2-methylpropyl)acetamide, Nuclear receptor subfamily 1 group I member 2,Nuclear receptor coactivator 1 Chimera
Authors:DHAR, T.G, GONG, H, WEINSTEIN, D.S, LU, Z, DUAN, J.J.W, STACHURA, S, HAQUE, L, KARMAKAR, A, HEMAGIRI, H, RAUT, D.K, GUPTA, A.K, KHAN, J.A, SACK, J.S, CAMAC, D.M, PUDZIANOWSKI, A.A, WU, D.R, YARDE, M, SHEN, D.R, BOROWSKI, V, XIE, J.H, SUN, H, ARIENZO, C.D, DABROS, M, GALELLA, M.A, WANG, F, WEIGELT, C.A, ZHAO, Q, FOSTER, W, SOMERVILLE, J.E, SALTER-CID, L.M, BARRISH, J.C, CARTER, P.H.
Deposit date:2017-11-17
Release date:2017-12-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Identification of bicyclic hexafluoroisopropyl alcohol sulfonamides as retinoic acid receptor-related orphan receptor gamma (ROR gamma /RORc) inverse agonists. Employing structure-based drug design to improve pregnane X receptor (PXR) selectivity.
Bioorg. Med. Chem. Lett., 28, 2018
3MJE
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BU of 3mje by Molmil
Structure of A-type Ketoreductases from Modular Polyketide Synthase
Descriptor: AmphB, GLYCEROL, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Zheng, J, Taylor, C.A, Piasecki, S.K, Keatinge-Clay, A.T.
Deposit date:2010-04-12
Release date:2010-08-18
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Structural and Functional Analysis of A-Type Ketoreductases from the Amphotericin Modular Polyketide Synthase.
Structure, 18, 2010
4JF5
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BU of 4jf5 by Molmil
Structure of OXA-23 at pH 4.1
Descriptor: 1,2-ETHANEDIOL, Beta-lactamase, CITRATE ANION
Authors:Smith, C.A, Vakulenko, S.B.
Deposit date:2013-02-27
Release date:2013-09-25
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Structural Basis for Carbapenemase Activity of the OXA-23 beta-Lactamase from Acinetobacter baumannii.
Chem.Biol., 20, 2013
3M5R
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BU of 3m5r by Molmil
Crystal Structure of Swine Flu Virus NS1 Effector Domain from H1N1 Influenza A/California/07/2009
Descriptor: Nonstructural protein 1
Authors:Fremont, D.H, Yu, Y.Y.L, Nelson, C.A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2010-03-13
Release date:2010-04-07
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Swine Flu Virus NS1 Effector Domain from H1N1 Influenza A/California/07/2009
To be Published
2OIX
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BU of 2oix by Molmil
Xanthomonas XopD C470A Mutant
Descriptor: Xanthomonas outer protein D
Authors:Chosed, R, Tomchick, D.R, Brautigam, C.A, Machius, M, Orth, K.
Deposit date:2007-01-11
Release date:2007-05-29
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural analysis of Xanthomonas XopD provides insights into substrate specificity of ubiquitin-like protein proteases.
J.Biol.Chem., 282, 2007
3M7U
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BU of 3m7u by Molmil
Crystal Structure of Alpha-Lytic Protease SB1+2 R64A/E182Q Mutant
Descriptor: Alpha-lytic protease, SELF-PROTEOLYSIS PRODUCT (RESIDUES 184-187), SULFATE ION
Authors:Agard, D.A, Erciyas Bailey, F.P, Waddling, C.A.
Deposit date:2010-03-17
Release date:2011-02-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Quantifying protein unfolding cooperativity with acid sensitive probes: Interdomain salt bridge contributions to unfolding cooperativity are combined efficiently in alpha-Lytic Protease
To be Published
2G06
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BU of 2g06 by Molmil
X-ray structure of mouse pyrimidine 5'-nucleotidase type 1, with bound magnesium(II)
Descriptor: Cytosolic 5'-nucleotidase III, MAGNESIUM ION, PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID)
Authors:Bitto, E, Bingman, C.A, Wesenberg, G.E, Phillips Jr, G.N, Center for Eukaryotic Structural Genomics (CESG)
Deposit date:2006-02-11
Release date:2006-04-04
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structure of pyrimidine 5'-nucleotidase type 1. Insight into mechanism of action and inhibition during lead poisoning.
J.Biol.Chem., 281, 2006
2N91
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BU of 2n91 by Molmil
A key amino acid in the control of different functional behavior within the triheme cytochrome family from Geobacter sulfurreducens
Descriptor: Cytochrome C, PROTOPORPHYRIN IX CONTAINING FE
Authors:Dantas, J.M, Simoes, T, Bruix, M, Salgueiro, C.A.
Deposit date:2015-11-02
Release date:2016-09-21
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Unveiling the Structural Basis That Regulates the Energy Transduction Properties within a Family of Triheme Cytochromes from Geobacter sulfurreducens.
J.Phys.Chem.B, 120, 2016
6DH2
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BU of 6dh2 by Molmil
Crystal structure of HIV-1 Protease NL4-3 I84V Mutant in complex with UMass6
Descriptor: (3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(1S,2R)-3-{[(4-aminophenyl)sulfonyl](2-ethylbutyl)amino}-1-benzyl-2-hydroxypropyl]carbamate, Protease, SULFATE ION
Authors:Lockbaum, G.J, Schiffer, C.A.
Deposit date:2018-05-18
Release date:2018-12-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.978 Å)
Cite:Structural Adaptation of Darunavir Analogues against Primary Mutations in HIV-1 Protease.
ACS Infect Dis, 5, 2019
4JVZ
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BU of 4jvz by Molmil
Structure of Thermosynechococcus elongatus CcmL
Descriptor: Carbon dioxide concentrating mechanism protein, SULFATE ION
Authors:Sutter, M, Kerfeld, C.A.
Deposit date:2013-03-26
Release date:2013-09-04
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Two new high-resolution crystal structures of carboxysome pentamer proteins reveal high structural conservation of CcmL orthologs among distantly related cyanobacterial species.
Photosynth.Res., 118, 2013
3UBY
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BU of 3uby by Molmil
Crystal structure of human alklyadenine DNA glycosylase in a lower and higher-affinity complex with DNA
Descriptor: DNA (5'-D(*GP*AP*CP*AP*TP*GP*(EDC)P*TP*TP*GP*CP*CP*T)-3'), DNA-3-methyladenine glycosylase
Authors:Setser, J.W, Lingaraju, G.M, Davis, C.A, Samson, L.D, Drennan, C.L.
Deposit date:2011-10-25
Release date:2011-12-28
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Searching for DNA lesions: structural evidence for lower- and higher-affinity DNA binding conformations of human alkyladenine DNA glycosylase.
Biochemistry, 51, 2012
6DIT
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BU of 6dit by Molmil
Crystal structure of HCV NS3/4A protease in complex with P4-2 (JZ01-19)
Descriptor: NS3 protease, ZINC ION, pentyl [(2R,6S,12Z,13aS,14aR,16aS)-2-[(7-methoxy-3-methylquinoxalin-2-yl)oxy]-14a-{[(1-methylcyclopropyl)sulfonyl]carbamoyl}-5, ...
Authors:Matthew, A.N, Schiffer, C.A.
Deposit date:2018-05-23
Release date:2019-07-31
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.789 Å)
Cite:Design of Hepatitis C NS3/4A Protease Inhibitors Leveraging Untapped Regions of the Substrate Envelope
To Be Published
3NI9
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BU of 3ni9 by Molmil
GES-2 carbapenemase apo form
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Beta-lactamase GES-2
Authors:Frase, H, Smith, C.A, Toth, M, Vakulenko, S.B.
Deposit date:2010-06-15
Release date:2011-02-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Kinetic and structural requirements for carbapenemase activity in GES-type beta-lactamases.
Biochemistry, 54, 2015

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