PDB Search results for query - Protein Data Bank Japan

PDB: 106 results

Cobalt(II)-substituted Horse Liver Alcohol Dehydrogenase in Complex with NADH and N-Cyclohexylformamide
Descriptor:	1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Alcohol dehydrogenase E chain, COBALT (II) ION, ...
Authors:	Zheng, C, Mathews, I.I, Boxer, S.G.
Deposit date:	2022-09-15
Release date:	2023-02-01
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (1.65 Å)
Cite:	Enhanced active-site electric field accelerates enzyme catalysis. Nat.Chem., 15, 2023

8EIY

Cobalt(II)-substituted S48T Horse Liver Alcohol Dehydrogenase in Complex with NADH and N-Cyclohexylformamide
Descriptor:	1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Alcohol dehydrogenase E chain, COBALT (II) ION, ...
Authors:	Zheng, C, Mathews, I.I, Boxer, S.G.
Deposit date:	2022-09-15
Release date:	2023-02-01
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (2.55 Å)
Cite:	Enhanced active-site electric field accelerates enzyme catalysis. Nat.Chem., 15, 2023

8EIX

Cobalt(II)-substituted S48A Horse Liver Alcohol Dehydrogenase in Complex with NADH and N-Cyclohexylformamide
Descriptor:	1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Alcohol dehydrogenase E chain, COBALT (II) ION, ...
Authors:	Zheng, C, Mathews, I.I, Boxer, S.G.
Deposit date:	2022-09-15
Release date:	2023-02-01
Last modified:	2023-12-13
Method:	X-RAY DIFFRACTION (2.46 Å)
Cite:	Enhanced active-site electric field accelerates enzyme catalysis. Nat.Chem., 15, 2023

8DZX

Crystal structure of photoactive yellow protein (PYP); F96oCNF M100K construct
Descriptor:	4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:	Kirsh, J.M, Weaver, J.B, Boxer, S.G.
Deposit date:	2022-08-08
Release date:	2022-08-24
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.14 Å)
Cite:	Protic and Aprotic Interactions Systematically Perturbed and Mapped via MD and IR Spectroscopy To Be Published

8E1K

Crystal structure of photoactive yellow protein (PYP); F96oCNF M100Q construct
Descriptor:	4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:	Kirsh, J.M, Weaver, J.B, Boxer, S.G.
Deposit date:	2022-08-10
Release date:	2022-08-24
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.02 Å)
Cite:	Protic and Aprotic Interactions Systematically Perturbed and Mapped via MD and IR Spectroscopy To Be Published

8E09

Crystal structure of photoactive yellow protein (PYP); F96oCNF M100E construct
Descriptor:	4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:	Kirsh, J.M, Weaver, J.B, Boxer, S.G.
Deposit date:	2022-08-08
Release date:	2022-08-24
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.01 Å)
Cite:	Protic and Aprotic Interactions Systematically Perturbed and Mapped via MD and IR Spectroscopy To Be Published

8DZY

Crystal structure of photoactive yellow protein (PYP); F96oCNF I49T construct
Descriptor:	4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:	Weaver, J.B, Kirsh, J.M, Boxer, S.G.
Deposit date:	2022-08-08
Release date:	2022-08-24
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.01 Å)
Cite:	Protic and Aprotic Interactions Systematically Perturbed and Mapped via MD and IR Spectroscopy To Be Published

8E02

Crystal structure of photoactive yellow protein (PYP); F96oCNF T103V construct
Descriptor:	4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:	Kirsh, J.M, Weaver, J.B, Boxer, S.G.
Deposit date:	2022-08-08
Release date:	2022-08-24
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.09 Å)
Cite:	Protic and Aprotic Interactions Systematically Perturbed and Mapped via MD and IR Spectroscopy To Be Published

8E1L

Crystal structure of photoactive yellow protein (PYP); F96oCNF M100N construct
Descriptor:	4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:	Kirsh, J.M, Weaver, J.B, Boxer, S.G.
Deposit date:	2022-08-10
Release date:	2022-08-24
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.2 Å)
Cite:	Protic and Aprotic Interactions Systematically Perturbed and Mapped via MD and IR Spectroscopy To Be Published

8E03

Crystal structure of photoactive yellow protein (PYP); F96oCNF M100D construct
Descriptor:	4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:	Kirsh, J.M, Weaver, J.B, Boxer, S.G.
Deposit date:	2022-08-08
Release date:	2022-08-24
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.24 Å)
Cite:	Protic and Aprotic Interactions Systematically Perturbed and Mapped via MD and IR Spectroscopy To Be Published

8DZU

Crystal structure of photoactive yellow protein (PYP); F96oCNF M100H construct
Descriptor:	4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:	Kirsh, J.M, Weaver, J.B, Boxer, S.G.
Deposit date:	2022-08-08
Release date:	2022-08-24
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.04 Å)
Cite:	Protic and Aprotic Interactions Systematically Perturbed and Mapped via MD and IR Spectroscopy To Be Published

6OFK

Crystal structure of green fluorescent protein (GFP); S65T; ih circular permutant (50-51)
Descriptor:	ACETATE ION, Green Fluorescent Protein (GFP); S65T; ih circular permutant (50-51)
Authors:	Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G.
Deposit date:	2019-03-30
Release date:	2019-07-10
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.15 Å)
Cite:	Unified Model for Photophysical and Electro-Optical Properties of Green Fluorescent Proteins. J.Am.Chem.Soc., 141, 2019

6OG9

Crystal structure of Green Fluorescent Protein (GFP); S65T, Y66(3,5-F2Y), H148D; circular permutant (50-51)
Descriptor:	Crystal structure of Green Fluorescent Protein (GFP); S65T, Y66(3,5-F2Y), H148D; circular permutant (50-51)
Authors:	Lin, C.-Y, Deng, A, Boxer, S.G.
Deposit date:	2019-04-02
Release date:	2020-04-08
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.798 Å)
Cite:	Unusual Spectroscopic and Electric Field Sensitivity of Chromophores with Short Hydrogen Bonds: GFP and PYP as Model Systems. J.Phys.Chem.B, 124, 2020

6OFN

Crystal structure of green fluorescent protein (GFP); S65T, T203(3-OMeY); ih circular permutant (50-51)
Descriptor:	Green fluorescent protein (GFP); S65T, T203(3-OMeY); ih circular permutant (50-51)
Authors:	Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G.
Deposit date:	2019-03-31
Release date:	2019-07-10
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.649 Å)
Cite:	Unified Model for Photophysical and Electro-Optical Properties of Green Fluorescent Proteins. J.Am.Chem.Soc., 141, 2019

6OFL

Crystal structure of green fluorescent protein (GFP); S65T, Y66(3-ClY); ih circular permutant (50-51)
Descriptor:	Green fluorescent protein (GFP); S65T, Y66(3-ClY); ih circular permutant (50-51)
Authors:	Lin, C.-Y, Romei, M.G, Mathews, I.I, Boxer, S.G.
Deposit date:	2019-03-31
Release date:	2019-07-10
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.25 Å)
Cite:	Unified Model for Photophysical and Electro-Optical Properties of Green Fluorescent Proteins. J.Am.Chem.Soc., 141, 2019

6OFO

Crystal structure of split green fluorescent protein (GFP); s10 circular permutant (194-195)
Descriptor:	Green fluorescent protein (GFP); s10 circular permutant (194-195)
Authors:	Lin, C.-Y, Romei, M.G, Deller, M.C, Doukov, T.I, Boxer, S.G.
Deposit date:	2019-03-31
Release date:	2019-07-10
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (2.603 Å)
Cite:	Unified Model for Photophysical and Electro-Optical Properties of Green Fluorescent Proteins. J.Am.Chem.Soc., 141, 2019

6OG8

Crystal structure of Green Fluorescent Protein (GFP); S65T, H148D with globally incorporated 3-F1Y; circular permutant (50-51)
Descriptor:	Crystal structure of Green Fluorescent Protein (GFP); S65T, H148D with globally incorporated 3-F1Y; circular permutant (50-51)
Authors:	Lin, C.-Y, Deng, A, Boxer, S.G.
Deposit date:	2019-04-01
Release date:	2020-04-08
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.599 Å)
Cite:	Unusual Spectroscopic and Electric Field Sensitivity of Chromophores with Short Hydrogen Bonds: GFP and PYP as Model Systems. J.Phys.Chem.B, 124, 2020

6PFU

rsEGFP2 with a chlorinated chromophore in the non-fluorescent off-state in a contracted unit cell
Descriptor:	Green fluorescent protein, SULFATE ION
Authors:	Chang, J, Romei, M.G, Boxer, S.G.
Deposit date:	2019-06-22
Release date:	2019-08-07
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.619 Å)
Cite:	Structural Evidence of Photoisomerization Pathways in Fluorescent Proteins. J.Am.Chem.Soc., 141, 2019

6PFR

rsEGFP2 with a chlorinated chromophore in the fluorescent on-state
Descriptor:	Green fluorescent protein
Authors:	Chang, J, Romei, M.G, Boxer, S.G.
Deposit date:	2019-06-22
Release date:	2019-08-07
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.51 Å)
Cite:	Structural Evidence of Photoisomerization Pathways in Fluorescent Proteins. J.Am.Chem.Soc., 141, 2019

6PFS

rsEGFP2 with a chlorinated chromophore in the fluorescent on-state in a contracted unit cell
Descriptor:	Green fluorescent protein, SULFATE ION
Authors:	Chang, J, Romei, M.G, Boxer, S.G.
Deposit date:	2019-06-22
Release date:	2019-08-07
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.759 Å)
Cite:	Structural Evidence of Photoisomerization Pathways in Fluorescent Proteins. J.Am.Chem.Soc., 141, 2019

6PFT

rsEGFP2 with a chlorinated chromophore in the non-fluorescent off-state
Descriptor:	Green fluorescent protein, SULFATE ION
Authors:	Chang, J, Romei, M.G, Boxer, S.G.
Deposit date:	2019-06-22
Release date:	2019-08-07
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.45 Å)
Cite:	Structural Evidence of Photoisomerization Pathways in Fluorescent Proteins. J.Am.Chem.Soc., 141, 2019

3OQY

Semi-synthetic ribonuclease S: para-cyano-phenylalanine at position 8
Descriptor:	Ribonuclease pancreatic
Authors:	Fafarman, A.T, Boxer, S.G.
Deposit date:	2010-09-04
Release date:	2010-10-20
Last modified:	2023-12-06
Method:	X-RAY DIFFRACTION (1.494 Å)
Cite:	Nitrile bonds as infrared probes of electrostatics in ribonuclease S. J.Phys.Chem.B, 114, 2010

3OQZ

Semi-synthetic ribonuclease S: meta-cyano-phenylalanine at position 8
Descriptor:	Ribonuclease pancreatic
Authors:	Fafarman, A.T, Boxer, S.G.
Deposit date:	2010-09-04
Release date:	2010-10-20
Last modified:	2023-12-06
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	Nitrile bonds as infrared probes of electrostatics in ribonuclease S. J.Phys.Chem.B, 114, 2010

3OR0

Semi-synthetic ribonuclease S: cyanylated homocysteine at position 13
Descriptor:	Ribonuclease pancreatic
Authors:	Fafarman, A.T, Boxer, S.G.
Deposit date:	2010-09-05
Release date:	2010-10-20
Last modified:	2023-12-06
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	Nitrile bonds as infrared probes of electrostatics in ribonuclease S. J.Phys.Chem.B, 114, 2010

6UMZ

Crystal structure of photoactive yellow protein (PYP); 3-Br-p-coumaric acid chromophore
Descriptor:	(2E)-3-(3-bromo-4-hydroxyphenyl)prop-2-enoic acid, Photoactive yellow protein
Authors:	Lin, C.-Y, Romei, M.G, Boxer, S.G.
Deposit date:	2019-10-10
Release date:	2020-07-15
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (0.9 Å)
Cite:	Structural and spectroscopic characterization of photoactive yellow protein and photoswitchable fluorescent protein constructs containing heavy atoms. J Photochem Photobiol A Chem, 401, 2020

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Total results:	106
Displayed results:	25
Sorted by:	Hit score (from highest)
Deposition authors:	"Boxer, S.G."